mRNA_S-ischiensis_contig83.19981.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19981.1
Unique NamemRNA_S-ischiensis_contig83.19981.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.19981.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.630e-7
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  199 SRHGGGRRP----EER-ADFHLGPAVVNHFLKCEHRHDLAMQALLGEQGFARAKREGAARL 366
            S+  G RRP    E+R A F LGPA   H  K E  HD AM   LGEQG+ARAKREGAARL
Sbjct: 1923 SQERGCRRPSRGFEDRLAAFQLGPAARQHLAKSEQAHDEAMALFLGEQGYARAKREGAARL 1983
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BLAST of mRNA_S-ischiensis_contig83.19981.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.580e-7
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  199 SRHGGGRRP----EER-ADFHLGPAVVNHFLKCEHRHDLAMQALLGEQGFARAKREGAARL 366
            S+  G +RP    E+R A F LGPA + H  K E  HD AM   LGE+G+ARAKREGAARL
Sbjct: 1850 SQERGCKRPSRGFEDRLAAFQLGPAALQHLAKSEQAHDEAMTLFLGEKGYARAKREGAARL 1910
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZY2_ECTSI2.630e-759.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL36_9PHAE6.580e-755.74Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:218181..218900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.20314-CDS-S-ischiensis_contig83:218180..2184891622817324.20314-CDS-S-ischiensis_contig83:218180..218489Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 218181..218489 +
1695741027.3008206-CDS-S-ischiensis_contig83:218180..2184891695741027.3008206-CDS-S-ischiensis_contig83:218180..218489Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 218181..218489 +
1622817324.215514-CDS-S-ischiensis_contig83:218711..2189001622817324.215514-CDS-S-ischiensis_contig83:218711..218900Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 218712..218900 +
1695741027.3151257-CDS-S-ischiensis_contig83:218711..2189001695741027.3151257-CDS-S-ischiensis_contig83:218711..218900Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 218712..218900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19981.1prot_S-ischiensis_contig83.19981.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 218181..218900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19981.1

>prot_S-ischiensis_contig83.19981.1 ID=prot_S-ischiensis_contig83.19981.1|Name=mRNA_S-ischiensis_contig83.19981.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=166bp
AAAAGGKGANTGAGMLAATLQPRGLGGSAAATAVAAAAPTAPGSARLLAT
LTPPRLQRPKRSSSAPSRHGGGRRPEERADFHLGPAVVNHFLKCEHRHDL
AMQALLGEQGFARAKREGAARLRLKTHGPPDPSPASSSASSLAHPTGRRA
SGSSGPDAGGSGGGRG
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mRNA from alignment at S-ischiensis_contig83:218181..218900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19981.1 ID=mRNA_S-ischiensis_contig83.19981.1|Name=mRNA_S-ischiensis_contig83.19981.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig83:218181..218900+ (Schizocladia ischiensis KU_0333)
GCGGCGGCGGCGGGTGGCAAGGGGGCCAACACAGGGGCAGGCATGCTGGC
GGCCACCCTGCAGCCTCGGGGATTGGGCGGTTCGGCGGCGGCCACGGCGG
TGGCGGCAGCGGCACCCACCGCCCCGGGCAGCGCGAGGCTCCTCGCGACG
CTGACCCCGCCGCGGCTGCAGCGGCCCAAGCGCTCGAGCAGCGCGCCCTC
CCGCCACGGGGGGGGGCGGCGGCCCGAGGAGCGCGCGGACTTCCACCTGG
GGCCGGCCGTGGTGAACCACTTCCTAAAGTGCGAGCACCGGCACGACCTG
GCCATGCAGGTAGCCATGCTACAAAATTGCCATCGCTGTTTTTGGTGCGC
GGGCCACCCTATGAAGGACGCATCGGATGACCGGGAAATTTTGACATATG
AAAGAGCTCGATGAGTTGGTTCATAGTTTTCGCATCACAACATAACATGG
ACCGAGCAACAGGTCAATCGATACTCGATAATAGTGCTTGGGCAAAAAAA
AATCGCACTTTTGTACCGTGGTTTCATGCAGGCGCTGCTCGGGGAGCAGG
GCTTTGCCCGTGCCAAGCGCGAGGGGGCGGCGCGGCTGCGCCTCAAGACC
CACGGGCCGCCTGACCCCTCCCCCGCCTCCTCCTCGGCCTCCTCTCTGGC
GCACCCGACCGGCCGCCGCGCCAGCGGCTCGAGCGGCCCGGACGCTGGAG
GCTCTGGTGGCGGCCGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:218181..218900+

>mRNA_S-ischiensis_contig83.19981.1 ID=mRNA_S-ischiensis_contig83.19981.1|Name=mRNA_S-ischiensis_contig83.19981.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=996bp|location=Sequence derived from alignment at S-ischiensis_contig83:218181..218900+ (Schizocladia ischiensis KU_0333)
GCGGCGGCGGCGGGTGGCAAGGGGGCCAACACAGGGGCAGGCATGCTGGC
GGCCACCCTGCAGCCTCGGGGATTGGGCGGTTCGGCGGCGGCCACGGCGG
TGGCGGCAGCGGCACCCACCGCCCCGGGCAGCGCGAGGCTCCTCGCGACG
CTGACCCCGCCGCGGCTGCAGCGGCCCAAGCGCTCGAGCAGCGCGCCCTC
CCGCCACGGGGGGGGGCGGCGGCCCGAGGAGCGCGCGGACTTCCACCTGG
GGCCGGCCGTGGTGAACCACTTCCTAAAGTGCGAGCACCGGCACGACCTG
GCCATGCAGGCGGCGGCGGCGGGTGGCAAGGGGGCCAACACAGGGGCAGG
CATGCTGGCGGCCACCCTGCAGCCTCGGGGATTGGGCGGTTCGGCGGCGG
CCACGGCGGTGGCGGCAGCGGCACCCACCGCCCCGGGCAGCGCGAGGCTC
CTCGCGACGCTGACCCCGCCGCGGCTGCAGCGGCCCAAGCGCTCGAGCAG
CGCGCCCTCCCGCCACGGGGGGGGGCGGCGGCCCGAGGAGCGCGCGGACT
TCCACCTGGGGCCGGCCGTGGTGAACCACTTCCTAAAGTGCGAGCACCGG
CACGACCTGGCCATGCAGGCGCTGCTCGGGGAGCAGGGCTTTGCCCGTGC
CAAGCGCGAGGGGGCGGCGCGGCTGCGCCTCAAGACCCACGGGCCGCCTG
ACCCCTCCCCCGCCTCCTCCTCGGCCTCCTCTCTGGCGCACCCGACCGGC
CGCCGCGCCAGCGGCTCGAGCGGCCCGGACGCTGGAGGCTCTGGTGGCGG
CCGCGGGGCGCTGCTCGGGGAGCAGGGCTTTGCCCGTGCCAAGCGCGAGG
GGGCGGCGCGGCTGCGCCTCAAGACCCACGGGCCGCCTGACCCCTCCCCC
GCCTCCTCCTCGGCCTCCTCTCTGGCGCACCCGACCGGCCGCCGCGCCAG
CGGCTCGAGCGGCCCGGACGCTGGAGGCTCTGGTGGCGGCCGCGGG
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