mRNA_S-ischiensis_contig83.19976.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19976.1
Unique NamemRNA_S-ischiensis_contig83.19976.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:212460..213632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size386
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.0408306-CDS-S-ischiensis_contig83:212459..2125311622817324.0408306-CDS-S-ischiensis_contig83:212459..212531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 212460..212531 +
1695741027.222927-CDS-S-ischiensis_contig83:212459..2125311695741027.222927-CDS-S-ischiensis_contig83:212459..212531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 212460..212531 +
1622817324.0523393-CDS-S-ischiensis_contig83:213318..2136301622817324.0523393-CDS-S-ischiensis_contig83:213318..213630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 213319..213630 +
1695741027.235044-CDS-S-ischiensis_contig83:213318..2136301695741027.235044-CDS-S-ischiensis_contig83:213318..213630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 213319..213630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19976.1prot_S-ischiensis_contig83.19976.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 212460..213630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19976.1

>prot_S-ischiensis_contig83.19976.1 ID=prot_S-ischiensis_contig83.19976.1|Name=mRNA_S-ischiensis_contig83.19976.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
ETREVAAGGGGSDGSGSDHSDWDHDVGFEGLPQQLTLSMTLEMASKFGHL
EPPTGAATSAATAAAATTADPTRRPGPGLRPGPGPGTSGQRGRQPGAGQS
GAAAAAGPGRLAASAQGVVASGAGRQRK
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mRNA from alignment at S-ischiensis_contig83:212460..213632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19976.1 ID=mRNA_S-ischiensis_contig83.19976.1|Name=mRNA_S-ischiensis_contig83.19976.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1173bp|location=Sequence derived from alignment at S-ischiensis_contig83:212460..213632+ (Schizocladia ischiensis KU_0333)
GAGACGAGGGAGGTGGCGGCGGGCGGGGGCGGTTCGGACGGATCCGGGAG
CGATCACAGCGACTGGGACCATGTGAGTGGGCCGGCCTGCAAGGCATGGG
CGGCTTGCGCTCTGAGTATCGTGTGCCGGTTGTGGTACGTGGTGTGTGCG
CATGTGCTCGAGTATGCGTGTGGCTTGTGTGTTTTGTGTGTTTTGTGCAA
CGGGCCGGCGCGAGAAGCGCTCGTCGCCGTGTGTGGCTCCACGGATGGTA
CAGCAGTGCAGCCCCATTTCGTGCGCACTCATGTGCACGGCCTGGCCGGT
GCAAACCCGGCATGCACCGTCCCGGCCTAGTTGGGATGCGAGAGTCAATG
GCTATATAGCTACTCCTGTCGGACGGCAAACCCGAAGTTTTGACTTAGGG
CTGTCGGCATTGCACGCAAGGTTATGTCGCAAGACAAGCCAATGAGTACA
TACTCACGTATGTAGAGTAGTACTTCCAAGTGCACTCCACAGCAACAGCA
ACGCCTTGCTGCACAGTTTAAGACCTGATAAACTCCCCTGGTTAGCTGCC
CGTGGTTGGTCGCAGTCTCCGTGCATTGGGGCGCTCACGCATTTATCATC
CCATCAACTCCTCGCTACCCAACATACCCTACTCAGCATCGTTCGAGTAC
TCGTACAGCAGTACCAATTCCTCCCTGGCGTCCGCCCTGCCGGCCTTCCT
CCCGTCCCCCCCCGGTCCCACCCCACGTGCCGCGGTGCGTCGAAGACGCC
AATGCCCGCACGAACCAACTCGCCGACATCCGACCCTCACGCCCTCACGC
CTTGCCCCCCCACCCCCCCACCCCCCCCTCTCTCCCCCTCCCACCACGCC
TTCCCCCAGGACGTCGGCTTTGAGGGGCTGCCACAGCAGCTCACCCTCAG
CATGACCCTGGAAATGGCCTCCAAGTTTGGTCACCTCGAGCCCCCCACCG
GCGCCGCCACCTCCGCCGCCACCGCCGCCGCTGCTACCACTGCAGACCCG
ACCCGGAGGCCTGGGCCCGGACTGCGCCCGGGCCCGGGGCCGGGGACGTC
AGGGCAGAGGGGGCGGCAACCCGGTGCTGGACAGTCGGGGGCGGCGGCGG
CGGCAGGGCCGGGCCGTTTAGCTGCCAGCGCCCAGGGGGTCGTTGCGAGT
GGGGCGGGGAGGCAGCGGAAGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:212460..213632+

>mRNA_S-ischiensis_contig83.19976.1 ID=mRNA_S-ischiensis_contig83.19976.1|Name=mRNA_S-ischiensis_contig83.19976.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig83:212460..213632+ (Schizocladia ischiensis KU_0333)
GAGACGAGGGAGGTGGCGGCGGGCGGGGGCGGTTCGGACGGATCCGGGAG
CGATCACAGCGACTGGGACCATGAGACGAGGGAGGTGGCGGCGGGCGGGG
GCGGTTCGGACGGATCCGGGAGCGATCACAGCGACTGGGACCATGACGTC
GGCTTTGAGGGGCTGCCACAGCAGCTCACCCTCAGCATGACCCTGGAAAT
GGCCTCCAAGTTTGGTCACCTCGAGCCCCCCACCGGCGCCGCCACCTCCG
CCGCCACCGCCGCCGCTGCTACCACTGCAGACCCGACCCGGAGGCCTGGG
CCCGGACTGCGCCCGGGCCCGGGGCCGGGGACGTCAGGGCAGAGGGGGCG
GCAACCCGGTGCTGGACAGTCGGGGGCGGCGGCGGCGGCAGGGCCGGGCC
GTTTAGCTGCCAGCGCCCAGGGGGTCGTTGCGAGTGGGGCGGGGAGGCAG
CGGAAGGACGTCGGCTTTGAGGGGCTGCCACAGCAGCTCACCCTCAGCAT
GACCCTGGAAATGGCCTCCAAGTTTGGTCACCTCGAGCCCCCCACCGGCG
CCGCCACCTCCGCCGCCACCGCCGCCGCTGCTACCACTGCAGACCCGACC
CGGAGGCCTGGGCCCGGACTGCGCCCGGGCCCGGGGCCGGGGACGTCAGG
GCAGAGGGGGCGGCAACCCGGTGCTGGACAGTCGGGGGCGGCGGCGGCGG
CAGGGCCGGGCCGTTTAGCTGCCAGCGCCCAGGGGGTCGTTGCGAGTGGG
GCGGGGAGGCAGCGGAAG
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