mRNA_S-ischiensis_contig83.19975.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19975.1
Unique NamemRNA_S-ischiensis_contig83.19975.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:209785..211049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.9930477-CDS-S-ischiensis_contig83:209784..2098861622817323.9930477-CDS-S-ischiensis_contig83:209784..209886Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 209785..209886 +
1695741027.1973803-CDS-S-ischiensis_contig83:209784..2098861695741027.1973803-CDS-S-ischiensis_contig83:209784..209886Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 209785..209886 +
1622817324.0053518-CDS-S-ischiensis_contig83:210865..2110481622817324.0053518-CDS-S-ischiensis_contig83:210865..211048Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 210866..211048 +
1695741027.207559-CDS-S-ischiensis_contig83:210865..2110481695741027.207559-CDS-S-ischiensis_contig83:210865..211048Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 210866..211048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19975.1prot_S-ischiensis_contig83.19975.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 209785..211048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19975.1

>prot_S-ischiensis_contig83.19975.1 ID=prot_S-ischiensis_contig83.19975.1|Name=mRNA_S-ischiensis_contig83.19975.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
KLDAYREPDPAVLGEAEGLWKDFGTLLDAELTRKASDSHLLRHQARAHED
VRCLLKRRGSGSGTASGVPSAAAAAAAAVAAAAATGDRGQASGGS
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mRNA from alignment at S-ischiensis_contig83:209785..211049+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19975.1 ID=mRNA_S-ischiensis_contig83.19975.1|Name=mRNA_S-ischiensis_contig83.19975.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1265bp|location=Sequence derived from alignment at S-ischiensis_contig83:209785..211049+ (Schizocladia ischiensis KU_0333)
AAGCTGGATGCGTACAGGGAGCCAGACCCGGCAGTTCTGGGCGAAGCTGA
GGGGCTGTGGAAGGACTTTGGGACGCTTCTGGACGCGGAGCTCACGCGGA
AGGTGACAATGGCGCCGGTAGACTTCGTACTGGGCAGTAGAGCCGTTCAT
CACAAAACCCCTGCGTGGGTACACTGACCGGTACAGGGTGCTCTACTTGC
ACGAGTACGGTTGTGTATACTCATGTTCGGACTAGGTTTCTCGTCTCTGT
GCATGCCCTGGACCCGAACGATCCCCGTCTTTGTGTGTACTCATGTTCGG
ACGAGGTTTCTCGTCTCTGTGCATGCCCTGGACCCGGACGATCCTCCTCT
TTGGTCCCCTCTCGTGGATCGCTGGCCAGCTGTAGCTTACGCCGTTGGCC
GCGCGTCCAATTGGATGGAGCACGCCGGGTATTTCACGGACAGAACAAGT
AGGGTAGTACAGCATGTACTCAGAGTGCAGCACTTGGATAGTTTACTTGT
GTAGGTATACCTGTACTGGAGTACTACTGTACAGTGTGTGCGGGTGTGTG
TACTCACGTCGAACAGGGGACACCCCGTCCTGTCCATGCCGCCGACCGTC
GGCCCAGTATACCGCTATGCTTGCTGGACTGTGATGTGATATGATGTGAA
ACTACTGTTCCTTAGAGTATGTATCACATCACATCCATCACATCACAGTA
GCAGTAGTACACTACTTGCTGGGCCGCCCGGCAGGCCCCGCAGGGTAGAC
TTTCGCCCATTGGCCTCGCGAGTAAAGCGGGAACTTGCGTTCGACCGGGG
TAGGCATTCACTTGACCGGACCTTGTGTCCCATCCCGGTCAGCTCAGCGT
GCGTGTGCGGTACGTTTACTCGAGCGCAAGCTTGCCTACTGTACTGTACT
GTACTGTCCTGTAGTGCTCGGAAGCACGCTCCGAAGAAGAACTGTCTTGT
TTTGTCCCCTGCACGCACGCACGCACACACCCACGCACGCCAGATTGCCC
TTGCAAGTACTTGGAGGTCTTACAATGCTTGTACTCTACACCAACGCTAA
CCCCCGGGGGGTTCCTGCAAACGCCTCGCAGGCATCCGACAGCCACTTGC
TCCGGCACCAGGCCCGCGCCCACGAGGACGTGCGCTGTCTCCTCAAACGC
CGTGGCTCCGGCAGCGGCACTGCCAGTGGTGTGCCTTCCGCCGCCGCCGC
CGCCGCCGCCGCCGTCGCTGCCGCTGCCGCCACGGGTGACCGCGGCCAAG
CCTCTGGTGGCTCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:209785..211049+

>mRNA_S-ischiensis_contig83.19975.1 ID=mRNA_S-ischiensis_contig83.19975.1|Name=mRNA_S-ischiensis_contig83.19975.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig83:209785..211049+ (Schizocladia ischiensis KU_0333)
AAGCTGGATGCGTACAGGGAGCCAGACCCGGCAGTTCTGGGCGAAGCTGA
GGGGCTGTGGAAGGACTTTGGGACGCTTCTGGACGCGGAGCTCACGCGGA
AGAAGCTGGATGCGTACAGGGAGCCAGACCCGGCAGTTCTGGGCGAAGCT
GAGGGGCTGTGGAAGGACTTTGGGACGCTTCTGGACGCGGAGCTCACGCG
GAAGGCATCCGACAGCCACTTGCTCCGGCACCAGGCCCGCGCCCACGAGG
ACGTGCGCTGTCTCCTCAAACGCCGTGGCTCCGGCAGCGGCACTGCCAGT
GGTGTGCCTTCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGCTGCCGCTGC
CGCCACGGGTGACCGCGGCCAAGCCTCTGGTGGCTCCGCATCCGACAGCC
ACTTGCTCCGGCACCAGGCCCGCGCCCACGAGGACGTGCGCTGTCTCCTC
AAACGCCGTGGCTCCGGCAGCGGCACTGCCAGTGGTGTGCCTTCCGCCGC
CGCCGCCGCCGCCGCCGCCGTCGCTGCCGCTGCCGCCACGGGTGACCGCG
GCCAAGCCTCTGGTGGCTCC
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