mRNA_S-ischiensis_contig83.19974.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19974.1
Unique NamemRNA_S-ischiensis_contig83.19974.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:206859..209737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1260
Cds size930
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19974.1prot_S-ischiensis_contig83.19974.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 207187..209737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.9220364-UTR-S-ischiensis_contig83:206858..2071861622817323.9220364-UTR-S-ischiensis_contig83:206858..207186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 206859..207186 +
1695741027.1497867-UTR-S-ischiensis_contig83:206858..2071861695741027.1497867-UTR-S-ischiensis_contig83:206858..207186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 206859..207186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.9360878-CDS-S-ischiensis_contig83:207186..2074421622817323.9360878-CDS-S-ischiensis_contig83:207186..207442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 207187..207442 +
1695741027.1591098-CDS-S-ischiensis_contig83:207186..2074421695741027.1591098-CDS-S-ischiensis_contig83:207186..207442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 207187..207442 +
1622817323.9474344-CDS-S-ischiensis_contig83:207903..2081111622817323.9474344-CDS-S-ischiensis_contig83:207903..208111Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 207904..208111 +
1695741027.1716576-CDS-S-ischiensis_contig83:207903..2081111695741027.1716576-CDS-S-ischiensis_contig83:207903..208111Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 207904..208111 +
1622817323.9594758-CDS-S-ischiensis_contig83:209271..2097371622817323.9594758-CDS-S-ischiensis_contig83:209271..209737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 209272..209737 +
1695741027.185882-CDS-S-ischiensis_contig83:209271..2097371695741027.185882-CDS-S-ischiensis_contig83:209271..209737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 209272..209737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19974.1

>prot_S-ischiensis_contig83.19974.1 ID=prot_S-ischiensis_contig83.19974.1|Name=mRNA_S-ischiensis_contig83.19974.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=310bp
MSDIWIPMCAPVRIGAPLPSGPAFTRCAVAWPPPIISSRRANNSNQLELP
KNVTYPPPPKKARTKKRHGPRRVSIGESPGIGESPAAAESSATVVVTTVP
KLQPPPPRPVRREREPRAVGGQWAGEAGEHEAAHLLRGEGGGMRPRKPHS
SPRPSMSSRRPQALARPPRARHPLPPGAKPEPGPRAPPPRRPLPLSSPRA
PRRRKKSAGEAARVDASPGQRRRRRRRRRRLAVPRNRRCRPTLPWLGRGA
GRALFRGRSAGGWGPVAAPGAARVGLSPGQERRRRHWRRQGQWRWGQLRQ
VVSGMLPPEG
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mRNA from alignment at S-ischiensis_contig83:206859..209737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19974.1 ID=mRNA_S-ischiensis_contig83.19974.1|Name=mRNA_S-ischiensis_contig83.19974.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2879bp|location=Sequence derived from alignment at S-ischiensis_contig83:206859..209737+ (Schizocladia ischiensis KU_0333)
CGCTGGCCTTTTTTGTCTCCCTCTTCTCTCTCTTATTTAGTGTGCTTGCA
ACGTGGTGCACTGGTGCACTCATTCTCTTGCTGGCAGTCATCGGATCAGA
AGATCGGGCAGCCAGAAGTCAGTACTACAGTATATATATGAGTACACATA
TATATGTGTGTGTGTACTGTCCTTGCCGTAGAGTGGTCCCGAGACCATTG
ACCCCGCGCCTCGACCGAGATGGATACTCGAGGGTTAAATTGGGATGTTC
CAAGTAGCAAGTTACTGTACAGTGGAGTAAGTTAACCTTGTTGGAAGGTA
ACCGGGGGTGCATTCGCTGTGCTTGTACATGTCGGACATCTGGATCCCAA
TGTGTGCTCCGGTTCGAATCGGCGCACCGCTTCCTTCCGGTCCTGCATTT
ACCCGTTGCGCTGTTGCCTGGCCGCCCCCAATAATATCCTCAAGACGTGC
CAACAACTCTAACCAGCTCGAACTCCCAAAGAATGTAACTTATCCCCCTC
CCCCCAAAAAAGCAAGAACAAAAAAACGGCACGGACCCAGAAGGGTCTCC
ATCGGCGAGAGTCCAGGCATCGGCGAGAGTCCAGGTGACCTCCAGAACAG
GGAGGGGAGAGTCGGCAAAATAGACCCCCCCCCCCCAGGAGGGGGGGGGG
CGTCGCCCGCCGTGTTTTCTCCATGCTTTGCCCCACGGCGTGGGTCGCGG
CCTTGACCGTTTTGGGGATCGTTTATGGGGGCTGGTGCTATCCAGTTCAA
ATTTCGATCAGTAGATAGTTGTCGGGCTCGACTGATTTTGTGGGTGGCGT
AACTAGCTACTTGGATTTAGTGTGGGTCAAACTATCGACTATCAACTATC
GATAGTACAGTCTACCACTCAAAATAGTTCAGCACTGTCGATAAATAGAT
TGATTTACTTAGATATTCCATCACTGGTGCTAACATGACACCGGCCCGAC
CCCGCGTACGCGACGTCGGCTTGTGTCCTGGGTCCCACCCCCACCCCGCG
CCTCATTCCACCTTGCCGTTCACCCCTCTTCGGCGGTGGCTGCAGCGGCA
GCGGAGTCATCTGCGACGGTAGTGGTGACAACAGTTCCAAAGCTGCAGCC
GCCGCCGCCGCGTCCGGTGCGTCGGGAGCGGGAGCCACGGGCGGTTGGAG
GGCAGTGGGCGGGCGAGGCGGGCGAGCACGAGGCAGCCCATCTACTGAGA
GGCGAAGGCGGGGGGATGCGGCCGCGGAAGCCGCACAGCTCTCCCCGCCC
AAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCGCGCGTGCCTGTG
TTTGCAGTGATGTAGTACTACGTACGAGTACTGTAGTATATAGTCGGACG
AGGCGCGGGGTCAGTGGTCTCGGGACTACGGCAAGCACCACGTGAGTACA
TACATATACGAAGTATATATATACTTCGTATATGTATGTACTCACGTGGT
GCTTGCCGTAGTCCATATATACTTCGTATATGTATGTACTCACGTGGTGC
TTGCCGTAGTCCCGAGACCATTGACCACGCACCTCGGTCGAGACGGAGCA
GGATGCAATGTGATTGCAACAGAGAAGCACTGTGGTTTGACATGACGTCA
CATCATATCCTCGGTGTGTGTATGTTTGATGTGATGTGATTTCAACTTTG
GAACGCTGTGGTTTGTCATCACGTAGCGTACCATAATCGGTTGTGGTGTG
TGCGTGCGTTTTTTTTCCTTCGTTCTTTCTTTCGTGCCTTTTGGTGGGCC
CGCTGAACTGGCAGTTGCGGCGGCTAGTGCGGGCCGGGGTGCACTAACAC
GGCGGGGACTAAGCTTACCTGCTATCGTACTCTGTATATGTACTCTATAC
TCGTGCATATACAATGTAGTGTACGCACGGTTAATGGCCTCGGGAGTATG
GCAAGCACAGTGTGAGTATATGTATACATACATAGTTCAAAGTATATGGT
TTGACCAATGGTCTCGGGAGTGCGGCAAGCACGATGTGGGTACATATATA
TACTTCGAAGTATATACTTTGGTCAATGGTGTCGGGAGTACGTAGAGATG
CACTTCCCAGTACTCACTTTGTGTTGACAGCACTGTGGTCCGGAGACCAT
TGACCACGCGCCTCGACTGAGACGGAGCAGCCCCCCTCCCGCCCCTGGCG
GAGACAGGGTGGGAGCGAGGAGGCATGGACCCATGGCTGGCCATTTCCAT
GCCCCACCATCCCTGAAAGTGTTTAGGTACGTCCTAAGTACTGCCCAGGC
GTTTGCCCCCCCGATTCTTGGCGCACTCGCTGTCCGCACGGTTTGGCGGC
CCCTGCTAGGGCTCCTGTTCGGTTCGCCCTGCCGCCCACCACGCCCTCCC
GCCGTCGATGCGTGCTTGCTTCCGTGCCCGCGTGCGTGCGTGCCTGCGTG
CTGGCGTGTGCAGTATGTCCAGCAGAAGACCGCAGGCCCTGGCTCGCCCC
CCCCGGGCTCGCCACCCCTTGCCGCCGGGCGCAAAGCCAGAGCCAGGCCC
ACGGGCGCCCCCACCGCGCCGGCCGCTGCCACTGTCATCGCCGCGGGCAC
CGCGTCGTCGAAAAAAATCGGCGGGGGAAGCGGCACGAGTGGACGCAAGC
CCGGGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTGGCGGTGCC
AAGGAACCGCCGCTGTCGTCCCACGCTGCCGTGGCTGGGCAGGGGCGCGG
GCAGAGCTCTGTTCCGCGGTCGCTCGGCCGGCGGGTGGGGGCCGGTGGCG
GCGCCGGGGGCGGCACGGGTGGGGCTGAGCCCGGGGCAGGAGCGTCGCCG
CCGCCACTGGCGGCGGCAGGGGCAGTGGCGGTGGGGGCAGCTGCGACAAG
TGGTGAGCGGGATGCTGCCGCCAGAGGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:206859..209737+

>mRNA_S-ischiensis_contig83.19974.1 ID=mRNA_S-ischiensis_contig83.19974.1|Name=mRNA_S-ischiensis_contig83.19974.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1860bp|location=Sequence derived from alignment at S-ischiensis_contig83:206859..209737+ (Schizocladia ischiensis KU_0333)
ATGTCGGACATCTGGATCCCAATGTGTGCTCCGGTTCGAATCGGCGCACC
GCTTCCTTCCGGTCCTGCATTTACCCGTTGCGCTGTTGCCTGGCCGCCCC
CAATAATATCCTCAAGACGTGCCAACAACTCTAACCAGCTCGAACTCCCA
AAGAATGTAACTTATCCCCCTCCCCCCAAAAAAGCAAGAACAAAAAAACG
GCACGGACCCAGAAGGGTCTCCATCGGCGAGAGTCCAGGCATCGGCGAGA
GTCCAGATGTCGGACATCTGGATCCCAATGTGTGCTCCGGTTCGAATCGG
CGCACCGCTTCCTTCCGGTCCTGCATTTACCCGTTGCGCTGTTGCCTGGC
CGCCCCCAATAATATCCTCAAGACGTGCCAACAACTCTAACCAGCTCGAA
CTCCCAAAGAATGTAACTTATCCCCCTCCCCCCAAAAAAGCAAGAACAAA
AAAACGGCACGGACCCAGAAGGGTCTCCATCGGCGAGAGTCCAGGCATCG
GCGAGAGTCCAGCGGCAGCGGAGTCATCTGCGACGGTAGTGGTGACAACA
GTTCCAAAGCTGCAGCCGCCGCCGCCGCGTCCGGTGCGTCGGGAGCGGGA
GCCACGGGCGGTTGGAGGGCAGTGGGCGGGCGAGGCGGGCGAGCACGAGG
CAGCCCATCTACTGAGAGGCGAAGGCGGGGGGATGCGGCCGCGGAAGCCG
CACAGCTCTCCCCGCCCAAGCGGCAGCGGAGTCATCTGCGACGGTAGTGG
TGACAACAGTTCCAAAGCTGCAGCCGCCGCCGCCGCGTCCGGTGCGTCGG
GAGCGGGAGCCACGGGCGGTTGGAGGGCAGTGGGCGGGCGAGGCGGGCGA
GCACGAGGCAGCCCATCTACTGAGAGGCGAAGGCGGGGGGATGCGGCCGC
GGAAGCCGCACAGCTCTCCCCGCCCAAGTATGTCCAGCAGAAGACCGCAG
GCCCTGGCTCGCCCCCCCCGGGCTCGCCACCCCTTGCCGCCGGGCGCAAA
GCCAGAGCCAGGCCCACGGGCGCCCCCACCGCGCCGGCCGCTGCCACTGT
CATCGCCGCGGGCACCGCGTCGTCGAAAAAAATCGGCGGGGGAAGCGGCA
CGAGTGGACGCAAGCCCGGGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCTGGCGGTGCCAAGGAACCGCCGCTGTCGTCCCACGCTGCCGTGGC
TGGGCAGGGGCGCGGGCAGAGCTCTGTTCCGCGGTCGCTCGGCCGGCGGG
TGGGGGCCGGTGGCGGCGCCGGGGGCGGCACGGGTGGGGCTGAGCCCGGG
GCAGGAGCGTCGCCGCCGCCACTGGCGGCGGCAGGGGCAGTGGCGGTGGG
GGCAGCTGCGACAAGTGGTGAGCGGGATGCTGCCGCCAGAGGGATATGTC
CAGCAGAAGACCGCAGGCCCTGGCTCGCCCCCCCCGGGCTCGCCACCCCT
TGCCGCCGGGCGCAAAGCCAGAGCCAGGCCCACGGGCGCCCCCACCGCGC
CGGCCGCTGCCACTGTCATCGCCGCGGGCACCGCGTCGTCGAAAAAAATC
GGCGGGGGAAGCGGCACGAGTGGACGCAAGCCCGGGGCAGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCTGGCGGTGCCAAGGAACCGCCGCTGTCGT
CCCACGCTGCCGTGGCTGGGCAGGGGCGCGGGCAGAGCTCTGTTCCGCGG
TCGCTCGGCCGGCGGGTGGGGGCCGGTGGCGGCGCCGGGGGCGGCACGGG
TGGGGCTGAGCCCGGGGCAGGAGCGTCGCCGCCGCCACTGGCGGCGGCAG
GGGCAGTGGCGGTGGGGGCAGCTGCGACAAGTGGTGAGCGGGATGCTGCC
GCCAGAGGGA
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