mRNA_S-ischiensis_contig83.19973.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19973.1
Unique NamemRNA_S-ischiensis_contig83.19973.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:205570..206186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size451
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.878519-CDS-S-ischiensis_contig83:205569..2058651622817323.878519-CDS-S-ischiensis_contig83:205569..205865Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 205570..205865 +
1695741027.1269383-CDS-S-ischiensis_contig83:205569..2058651695741027.1269383-CDS-S-ischiensis_contig83:205569..205865Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 205570..205865 +
1622817323.8895469-CDS-S-ischiensis_contig83:206031..2061851622817323.8895469-CDS-S-ischiensis_contig83:206031..206185Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 206032..206185 +
1695741027.1403687-CDS-S-ischiensis_contig83:206031..2061851695741027.1403687-CDS-S-ischiensis_contig83:206031..206185Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 206032..206185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19973.1prot_S-ischiensis_contig83.19973.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 205570..206185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19973.1

>prot_S-ischiensis_contig83.19973.1 ID=prot_S-ischiensis_contig83.19973.1|Name=mRNA_S-ischiensis_contig83.19973.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp
TFWSCPCRLPASGGREYGDNPPPGGRQLSSLAMADGEQASGSPDPEVEIE
RGEFSRFLSPTPALHRGGGHHRRTRSDPTSPTALSRQQGASGTSAGDFSA
SSRFRGAAPAHVRGGAGQPRGGGRGQPPLQGRPHHRRAQSLAGIVRTDKG
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mRNA from alignment at S-ischiensis_contig83:205570..206186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19973.1 ID=mRNA_S-ischiensis_contig83.19973.1|Name=mRNA_S-ischiensis_contig83.19973.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=617bp|location=Sequence derived from alignment at S-ischiensis_contig83:205570..206186+ (Schizocladia ischiensis KU_0333)
ACCTTTTGGAGCTGTCCTTGTCGTCTCCCCGCCAGCGGTGGGAGGGAGTA
CGGGGACAACCCGCCCCCCGGGGGGCGCCAACTGTCATCATTGGCCATGG
CTGATGGCGAGCAGGCCAGCGGGAGCCCCGATCCCGAGGTTGAGATTGAG
AGGGGCGAGTTCTCGCGGTTTCTGTCGCCCACTCCGGCGCTTCACCGGGG
CGGCGGCCACCACCGACGGACACGGAGCGATCCCACTAGCCCCACCGCAC
TCAGCAGGCAGCAGGGGGCCTCGGGAACGTCTGCTGGGGACTTCAGGTGG
GCTGTGCGGCAAGCGGCGGCTGCCCCGACAATCCGTAACCCCGCCCAGTT
CAAGTCCCCCTGCTGATTTGCTCATGCCACCCACTTGCCACATCCCATTT
GCGCTCTCCGCCGTCTCTCGTTCGCTCACTCCTCTTCCCCCGGGCCCTCA
CAACCACCGCAGCGCCTCTTCACGTTTTCGAGGCGCTGCCCCTGCCCATG
TCCGTGGGGGCGCAGGCCAACCCCGGGGCGGGGGGCGGGGTCAGCCTCCT
TTGCAGGGGCGCCCCCACCACCGCAGGGCACAGAGCCTGGCCGGCATTGT
CCGAACCGACAAAGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:205570..206186+

>mRNA_S-ischiensis_contig83.19973.1 ID=mRNA_S-ischiensis_contig83.19973.1|Name=mRNA_S-ischiensis_contig83.19973.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig83:205570..206186+ (Schizocladia ischiensis KU_0333)
ACCTTTTGGAGCTGTCCTTGTCGTCTCCCCGCCAGCGGTGGGAGGGAGTA
CGGGGACAACCCGCCCCCCGGGGGGCGCCAACTGTCATCATTGGCCATGG
CTGATGGCGAGCAGGCCAGCGGGAGCCCCGATCCCGAGGTTGAGATTGAG
AGGGGCGAGTTCTCGCGGTTTCTGTCGCCCACTCCGGCGCTTCACCGGGG
CGGCGGCCACCACCGACGGACACGGAGCGATCCCACTAGCCCCACCGCAC
TCAGCAGGCAGCAGGGGGCCTCGGGAACGTCTGCTGGGGACTTCAGACCT
TTTGGAGCTGTCCTTGTCGTCTCCCCGCCAGCGGTGGGAGGGAGTACGGG
GACAACCCGCCCCCCGGGGGGCGCCAACTGTCATCATTGGCCATGGCTGA
TGGCGAGCAGGCCAGCGGGAGCCCCGATCCCGAGGTTGAGATTGAGAGGG
GCGAGTTCTCGCGGTTTCTGTCGCCCACTCCGGCGCTTCACCGGGGCGGC
GGCCACCACCGACGGACACGGAGCGATCCCACTAGCCCCACCGCACTCAG
CAGGCAGCAGGGGGCCTCGGGAACGTCTGCTGGGGACTTCAGCGCCTCTT
CACGTTTTCGAGGCGCTGCCCCTGCCCATGTCCGTGGGGGCGCAGGCCAA
CCCCGGGGCGGGGGGCGGGGTCAGCCTCCTTTGCAGGGGCGCCCCCACCA
CCGCAGGGCACAGAGCCTGGCCGGCATTGTCCGAACCGACAAAGGGCGCC
TCTTCACGTTTTCGAGGCGCTGCCCCTGCCCATGTCCGTGGGGGCGCAGG
CCAACCCCGGGGCGGGGGGCGGGGTCAGCCTCCTTTGCAGGGGCGCCCCC
ACCACCGCAGGGCACAGAGCCTGGCCGGCATTGTCCGAACCGACAAAGGG
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