mRNA_S-ischiensis_contig83.19959.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19959.1
Unique NamemRNA_S-ischiensis_contig83.19959.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: A0A835ZBR6_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR6_9STRA)

HSP 1 Score: 290 bits (743), Expect = 2.230e-91
Identity = 152/299 (50.84%), Postives = 181/299 (60.54%), Query Frame = 2 
Query:  668 PRQDYVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTELSLTTSIVTRGELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTHRPLRTEATSSK 1564
            P   Y+ HRRYMVDW+SE+GE+L LQ VTIHSAISFLD++     Y  + WRLQA+CCLSVA                                                                     AKYEEAE NMPM+SE+A + E  LTT +VT+GEL LA+ L WD+SRVTAMHFLGYYL +GVT   D CQGR LV KV RYMKKYVEFFANLCQQD+ FQ++ PS +AAAS+LAARRALCI+P+WRPEL  LTG +      C E++W+FYE MFPTH+PLRT  +  K
Sbjct:    5 PSATYIPHRRYMVDWISEIGEELKLQPVTIHSAISFLDQVCTTQGYDPKGWRLQAICCLSVA---------------------------------------------------------------------AKYEEAERNMPMVSEMAIAAETRLTTGMVTQGELSLARGLGWDISRVTAMHFLGYYLHQGVTFLSDECQGRALVTKVTRYMKKYVEFFANLCQQDYSFQRHRPSTIAAASILAARRALCIAPLWRPELERLTGCAPRDIQACAEEVWAFYEAMFPTHQPLRTSGSEPK 234
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: D8LIL5_ECTSI (Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL5_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.240e-72
Identity = 114/158 (72.15%), Postives = 134/158 (84.81%), Query Frame = 2 
Query: 1064 KYEEAECNMPMISELADSTELSLTTSIVTRGELELAK-RLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTHR 1534
            +YEEAECNMPMISELAD+TE+SLTTSIVTRGEL+L + RL+WDVSRVTAMHFLGYY ++GVT P D CQGR LV+KVV YM KYV+FFANLCQQ + FQ+Y PS +AAA++L ARRALCI P+WR ELT+LTGY  +  ++CGE LW FYE MFP HR
Sbjct:  126 RYEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAAAAILTARRALCIKPMWRDELTDLTGYKLEEISDCGEDLWHFYEKMFPLHR 283
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: B8BTM7_THAPS (Cyclin N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTM7_THAPS)

HSP 1 Score: 185 bits (470), Expect = 4.500e-50
Identity = 111/321 (34.58%), Postives = 154/321 (47.98%), Query Frame = 2 
Query:  578 IDIELGYPAAEILQYWRQKEVAKQIVVKEPPRQDYVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTELSLT--TSIVTR-GELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTH 1531
            +D  LG   +++     Q +          P   Y+ +RRY+VDW+S+VGEQ  L T T+H  I +LD++    +     W+L A  CLSVA                                                                     AKYEEAE + P I +L   T+LS    TS+  R GE+++ + L W +  +  +H +GYYL+KG T   D  QGR L++K+ +Y+KKY EFF NL  Q++ FQQYLP+ LAAA +LA+R AL ISP WRPEL ELTG+      E  + +WS+YE  FP H
Sbjct:   55 MDETLGMQTSDLYASMLQTQTDYVSPQSYSPTSSYIPYRRYLVDWMSDVGEQCSLHTSTVHCGILYLDKIFREREVPRGSWQLLATACLSVA---------------------------------------------------------------------AKYEEAEEHCPHIPDLLRLTKLSSVGHTSLSFREGEVQVLRNLGWKLRAIPPLHVIGYYLSKGATFVDDAWQGRSLIEKIPKYIKKYAEFFCNLTLQEYSFQQYLPTHLAAAILLASREALQISPRWRPELEELTGFEEKEIGEAFQHVWSYYEEQFPGH 306
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: A0A7S2M1N0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M1N0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.020e-49
Identity = 108/291 (37.11%), Postives = 146/291 (50.17%), Query Frame = 2 
Query:  668 PRQDYVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTELSLT--TSIVTR-GELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTH 1531
            P+  Y+ +RRY+VDW+S+VGEQ  L T T+H +I FLD++    +     W+L A  CLSVA                                                                     AKYEEAE + P I +L   T+LS     S+  R GE+E+ K L W +  V  +H +GY+L+KG T   D  QGR L+DK+ +Y+KKY EFF NL  Q++ FQQYLP+ LAAA +LA+R +L I+P WRPEL  LTGYS D      + +W++YE  FP H
Sbjct:   83 PQASYIPYRRYLVDWMSDVGEQFHLHTSTVHVSILFLDKIFRTREIPRSHWQLLATACLSVA---------------------------------------------------------------------AKYEEAEEHCPAIPDLLKLTKLSNVGHNSLSFRDGEVEVLKYLGWKLRAVPPIHVVGYFLSKGATFEDDTWQGRALIDKIPKYVKKYAEFFCNLTLQEYSFQQYLPTHLAAAIILASRVSLQITPQWRPELQLLTGYSEDEIKGAFKHVWAYYEEQFPGH 304
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: A0A448Z377_9STRA (Cyclin N-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z377_9STRA)

HSP 1 Score: 182 bits (463), Expect = 4.940e-49
Identity = 112/326 (34.36%), Postives = 154/326 (47.24%), Query Frame = 2 
Query:  563 GAGNAIDIELGYPAAEILQYWRQKEVAKQIVVKEPPRQDYVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTELSL---TTSIVTRGELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTH 1531
            G    ID  L     ++ +  R+++V             Y+ +RRY+VDW+S+VGEQ  L   T+H AI FLD++    +    QW+L A  C+SVA                                                                     AKYEEAE + P I +L   T+L     T      GELE+ + LKW +  +  +H +GY+LAKGVT   D  QGR L++K+ RY+KKY EFF NL  Q++ FQQYLP+ L AA +LA+R AL I P W+PEL ELTGY+     +   ++WS+YE  FP H
Sbjct:   54 GIDTPIDDVLCIRTEDLYRDMRERQVEFVSPANYAQNASYLPYRRYLVDWMSDVGEQCRLHNSTVHVAILFLDKIFRSRNIPRGQWQLLATACISVA---------------------------------------------------------------------AKYEEAEEHCPPIPDLLRLTKLGNAGHTPLSFREGELEVLRYLKWQLRAIPPIHVVGYFLAKGVTFTDDSWQGRALIEKIPRYVKKYAEFFCNLTLQEYAFQQYLPTLLGAAIILASRVALNIEPRWKPELMELTGYNEVEITDAFHRVWSYYEEQFPGH 310
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: A0A6V2BY09_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BY09_9STRA)

HSP 1 Score: 183 bits (464), Expect = 9.800e-49
Identity = 113/321 (35.20%), Postives = 153/321 (47.66%), Query Frame = 2 
Query:  578 IDIELGYPAAEILQYWRQKEVAKQIVVKEPPRQDYVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTELSLT--TSIVTR-GELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTH 1531
            ID +L     ++    R+++V         P   Y+ +RRY+VDW+S+VGEQ  L   T+H +I FLD++    D    QW+L A  CLSVA                                                                     AKYEEAE + P I EL   T+LS    TS+  R GELE+ + L W +  +  +H +GY+LAKG T   D  QGR L++K+ +Y+KKY EFF NL  Q++ FQQYLP  LA A +LA+R AL + P WRPEL  LTGY      +  + +WS+YE  FP H
Sbjct:   97 IDEKLMICTEDLFLDMRERQVDFVSPSAYSPGASYLPYRRYLVDWMSDVGEQCRLHNTTVHVSILFLDKVFRSRDIPRSQWQLLATACLSVA---------------------------------------------------------------------AKYEEAEEHCPPIPELLQLTKLSSAGHTSLSFREGELEILRHLGWRLRAIPPLHVIGYFLAKGTTFEDDTWQGRALIEKIPKYVKKYAEFFCNLTLQEYAFQQYLPVHLATAILLASRVALQLQPRWRPELARLTGYEEAEITDVFQHVWSYYEEQFPGH 348
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: A0A7S3L9W8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9W8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.310e-48
Identity = 106/321 (33.02%), Postives = 156/321 (48.60%), Query Frame = 2 
Query:  578 IDIELGYPAAEILQYWRQKEVAKQIVVKEPPRQDYVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTELSLT--TSIVTR-GELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTH 1531
            ID ++     ++    ++++V         P   ++ +RRY+VDWLS+VGEQ  L T T+H ++ +LD++   +     QW+L A  CLS+A                                                                     AKYEEAE + P I +L   T+L+     S+  R GE+++ K L W +    A+H +GYYL+KG     D  QGR L++K+ RY+KKY EFF NL  QD+ FQQYLP++LAAA +LA+R AL + P WRPEL +LTGY  +   +    +W++YE  FP H
Sbjct:   80 IDRKINLHTEDLYADMKERQVDFVSPTSYNPEAAFLPYRRYLVDWLSDVGEQFRLHTSTVHVSVLYLDKIFRSVSIPRNQWQLVATACLSIA---------------------------------------------------------------------AKYEEAEEHCPPIPDLLSLTKLASAGHNSLTFREGEVQVLKHLGWRLRAFPAIHVIGYYLSKGACFEDDTWQGRGLIEKIPRYVKKYAEFFCNLTLQDYEFQQYLPTQLAAAILLASRVALQLEPRWRPELVQLTGYEEEEIVDIFHHVWAYYEEQFPGH 331
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: A0A1E7FL21_9STRA (Cyclin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL21_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.580e-48
Identity = 107/287 (37.28%), Postives = 140/287 (48.78%), Query Frame = 2 
Query:  680 YVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTELSLT--TSIVTR-GELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTH 1531
            Y+ +RRY+VDW+S+VGEQ  L   T+H  I FLD++    +    QW+L A  C+SVA                                                                     AKYEEAE + P I EL   T+L     T +  R GELE+ + L W +  V  +H +GY+LAKG    +D  QGR L++K+ +YMKKY +FF NL  Q++ FQQYLPS LAAA +LA+R AL I P WRPEL  LTGYS     +    +WS+YE  FP H
Sbjct:   20 YLPYRRYLVDWMSDVGEQCRLHNSTVHVGILFLDKIFRSRNIPRGQWQLLATACISVA---------------------------------------------------------------------AKYEEAEEHCPPIPELLRLTKLGNAGHTPLSFRDGELEVLRYLNWQLRAVPPIHVVGYFLAKGAVFYEDTWQGRSLIEKIPKYMKKYADFFCNLTLQEYSFQQYLPSHLAAAVILASRVALNIEPRWRPELVRLTGYSEIEITDAFHHVWSYYEEQFPGH 237
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: A0A7S1YXT2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXT2_TRICV)

HSP 1 Score: 178 bits (452), Expect = 9.500e-48
Identity = 109/326 (33.44%), Postives = 154/326 (47.24%), Query Frame = 2 
Query:  563 GAGNAIDIELGYPAAEILQYWRQKEVAKQIVVKEPPRQDYVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTEL--SLTTSIVTR-GELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTH 1531
            G    ID  L     ++    ++++V     +   P   Y+ +RRY+VDW+S+VGEQ  L   T+H +I +LD+M    +    QW+L A  C+SVA                                                                     AKYEEAE + P I EL   T+L  S  T++  R GEL + + L W +  +  +H +GYYL+KG T   D  QGR L++K+ +Y+KKYVEFF NL  Q++ FQQYLP+ LAAA +LA+R AL + P WRPEL  +TGY      +    +W +YE  FP H
Sbjct:   27 GISTPIDDVLNMCTEDLYDDMKERQVDFVSPLTYSPNSSYLPYRRYLVDWMSDVGEQCRLHNTTVHVSILYLDKMFRSRNIPRNQWQLLATACISVA---------------------------------------------------------------------AKYEEAEEHCPPIPELLQLTKLCNSGHTALSFREGELAVLQHLGWRLRAIPPLHIVGYYLSKGATFEDDTWQGRALIEKIPKYVKKYVEFFCNLTLQEYSFQQYLPTHLAAAILLASRVALQLEPRWRPELARVTGYEDHEIVDVFTHVWRYYEEQFPGH 283
[Close]
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Match: A0A7S4AXM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXM3_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.530e-46
Identity = 105/287 (36.59%), Postives = 137/287 (47.74%), Query Frame = 2 
Query:  680 YVMHRRYMVDWLSEVGEQLDLQTVTIHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEKEQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNRRTAKYEEAECNMPMISELADSTELS---LTTSIVTRGELELAKRLKWDVSRVTAMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHFQQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWSFYETMFPTH 1531
            Y+ +RRY+VDW+S+VGEQ  L   T+H AI FLD++    + S  QW+L A  C+SVA                                                                     AKYEEAE   P I +L   T+L     T      GELE+ + L W +  +  +H +GY+LAKGVT   D  QGR L+ K+ RY+KKY EFF NL  Q++ FQQYLPS L AA +LA+R AL I P W+ EL  LTGY+     +    +WS+YE  FP H
Sbjct:   82 YLPYRRYLVDWMSDVGEQCRLHNSTVHVAILFLDKIFRSRNISRGQWQLLATACISVA---------------------------------------------------------------------AKYEEAEEYCPPIPDLLRLTKLGDAGHTPLSFREGELEVLRYLNWQLRAIPPIHIIGYFLAKGVTFNDDAWQGRALIQKIPRYVKKYAEFFCNLTLQEYSFQQYLPSLLGAAIILASRVALNIEPRWKTELVTLTGYNEVEITDAFHHVWSYYEEQFPGH 299
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBR6_9STRA2.230e-9150.84Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
D8LIL5_ECTSI1.240e-7272.15Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
B8BTM7_THAPS4.500e-5034.58Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7S2M1N0_9STRA3.020e-4937.11Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A448Z377_9STRA4.940e-4934.36Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A6V2BY09_9STRA9.800e-4935.20Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S3L9W8_9STRA2.310e-4833.02Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7FL21_9STRA4.580e-4837.28Cyclin-like protein n=1 Tax=Fragilariopsis cylindr... [more]
A0A7S1YXT2_TRICV9.500e-4833.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4AXM3_9STRA1.530e-4636.59Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:124529..132414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue3.4e-44
Seed eggNOG ortholog35128.Thaps21159
Preferred nameCCNJL
KEGG koko:K06627,ko:K13983,ko:K21771
KEGG Pathwayko04068,ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04068,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
GOsGO:0000003,GO:0000278,GO:0001932,GO:0003006,GO:0003674,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0010468,GO:0016538,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030234,GO:0031323,GO:0031399,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0042325,GO:0043549,GO:0044703,GO:0045448,GO:0045859,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051338,GO:0051704,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0065009,GO:0080090,GO:0098772
EggNOG free text desc.Cyclin_C
EggNOG OGs2XASD@2836,COG5024@1,KOG0654@2759
EC3.6.4.13
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncyclin D1
Ec32 orthologEc-11_004300.1
Exons10
Model size1787
Cds size1590
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19959.1prot_S-ischiensis_contig83.19959.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 124683..132371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817327.0525565-UTR-S-ischiensis_contig83:124528..1246821622817327.0525565-UTR-S-ischiensis_contig83:124528..124682Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 124529..124682 +
1695741029.1776347-UTR-S-ischiensis_contig83:124528..1246821695741029.1776347-UTR-S-ischiensis_contig83:124528..124682Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 124529..124682 +
1622817327.1915298-UTR-S-ischiensis_contig83:132371..1324141622817327.1915298-UTR-S-ischiensis_contig83:132371..132414Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 132372..132414 +
1695741029.3261828-UTR-S-ischiensis_contig83:132371..1324141695741029.3261828-UTR-S-ischiensis_contig83:132371..132414Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 132372..132414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817327.065791-CDS-S-ischiensis_contig83:124682..1249121622817327.065791-CDS-S-ischiensis_contig83:124682..124912Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 124683..124912 +
1695741029.1949196-CDS-S-ischiensis_contig83:124682..1249121695741029.1949196-CDS-S-ischiensis_contig83:124682..124912Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 124683..124912 +
1622817327.0792532-CDS-S-ischiensis_contig83:125057..1251871622817327.0792532-CDS-S-ischiensis_contig83:125057..125187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 125058..125187 +
1695741029.2103925-CDS-S-ischiensis_contig83:125057..1251871695741029.2103925-CDS-S-ischiensis_contig83:125057..125187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 125058..125187 +
1622817327.0910904-CDS-S-ischiensis_contig83:125669..1257231622817327.0910904-CDS-S-ischiensis_contig83:125669..125723Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 125670..125723 +
1695741029.2237954-CDS-S-ischiensis_contig83:125669..1257231695741029.2237954-CDS-S-ischiensis_contig83:125669..125723Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 125670..125723 +
1622817327.1027067-CDS-S-ischiensis_contig83:126238..1263581622817327.1027067-CDS-S-ischiensis_contig83:126238..126358Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 126239..126358 +
1695741029.2359097-CDS-S-ischiensis_contig83:126238..1263581695741029.2359097-CDS-S-ischiensis_contig83:126238..126358Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 126239..126358 +
1622817327.1147497-CDS-S-ischiensis_contig83:127094..1271511622817327.1147497-CDS-S-ischiensis_contig83:127094..127151Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 127095..127151 +
1695741029.2487316-CDS-S-ischiensis_contig83:127094..1271511695741029.2487316-CDS-S-ischiensis_contig83:127094..127151Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 127095..127151 +
1622817327.1276078-CDS-S-ischiensis_contig83:128925..1290341622817327.1276078-CDS-S-ischiensis_contig83:128925..129034Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 128926..129034 +
1695741029.2626445-CDS-S-ischiensis_contig83:128925..1290341695741029.2626445-CDS-S-ischiensis_contig83:128925..129034Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 128926..129034 +
1622817327.1404471-CDS-S-ischiensis_contig83:129562..1298841622817327.1404471-CDS-S-ischiensis_contig83:129562..129884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 129563..129884 +
1695741029.2735422-CDS-S-ischiensis_contig83:129562..1298841695741029.2735422-CDS-S-ischiensis_contig83:129562..129884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 129563..129884 +
1622817327.1522088-CDS-S-ischiensis_contig83:130787..1308991622817327.1522088-CDS-S-ischiensis_contig83:130787..130899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 130788..130899 +
1695741029.2874205-CDS-S-ischiensis_contig83:130787..1308991695741029.2874205-CDS-S-ischiensis_contig83:130787..130899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 130788..130899 +
1622817327.1628797-CDS-S-ischiensis_contig83:131483..1316171622817327.1628797-CDS-S-ischiensis_contig83:131483..131617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 131484..131617 +
1695741029.300142-CDS-S-ischiensis_contig83:131483..1316171695741029.300142-CDS-S-ischiensis_contig83:131483..131617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 131484..131617 +
1622817327.177901-CDS-S-ischiensis_contig83:132049..1323711622817327.177901-CDS-S-ischiensis_contig83:132049..132371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 132050..132371 +
1695741029.3146362-CDS-S-ischiensis_contig83:132049..1323711695741029.3146362-CDS-S-ischiensis_contig83:132049..132371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 132050..132371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19959.1

>prot_S-ischiensis_contig83.19959.1 ID=prot_S-ischiensis_contig83.19959.1|Name=mRNA_S-ischiensis_contig83.19959.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=530bp
MSSLSSSSRQSGGLMQALGSLNPFKNPVFKQGERKSFPKARQDYGHVPRS
YGLNRSDPEPTERPKPTESRPAGRISRESTGTRSESTAHSDLNDDALDAP
APKATVGSPGAAGASHASGEAGAVGRSCAQGRGTGTGAGNAIDIELGYPA
AEILQYWRQKEVAKQIVVKEPPRQDYVMHRRYMVDWLSEVGEQLDLQTVT
IHSAISFLDEMMMLLDYSHRQWRLQAVCCLSVAGRVANGLGYSWPAVHEK
EQRPGSFGSRAYTDEKPRPNVSTHTHTRPNRLPRPPAAAPWLGSSALRNR
RTAKYEEAECNMPMISELADSTELSLTTSIVTRGELELAKRLKWDVSRVT
AMHFLGYYLAKGVTLPQDRCQGRPLVDKVVRYMKKYVEFFANLCQQDFHF
QQYLPSKLAAASVLAARRALCISPIWRPELTELTGYSHDAAAECGEKLWS
FYETMFPTHRPLRTEATSSKKPSSSSSAAPAAATAASASGSAAEASKGGG
GGGGGASRTAFSKRAPAAGVVAPHSRIVE*
back to top

mRNA from alignment at S-ischiensis_contig83:124529..132414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19959.1 ID=mRNA_S-ischiensis_contig83.19959.1|Name=mRNA_S-ischiensis_contig83.19959.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7886bp|location=Sequence derived from alignment at S-ischiensis_contig83:124529..132414+ (Schizocladia ischiensis KU_0333)
ACGAAGGTCTCACGTTGCGTAGTATCACCCGTGGGGGAGCCGTTCGTGCT
GGAAAACGGGATCCGAAACCCCAAAAGAACAACGGGGCAACTCCACCGGT
GCCTCTCTGGCGGGAGGGAGAGGGGCTGGGGGAGCCCCTGTTGCCCCCCC
GGGCATGTCATCGTTGTCGTCTTCCTCAAGACAAAGCGGGGGCCTCATGC
AGGCGTTGGGTTCACTCAACCCCTTCAAAAACCCTGTTTTCAAGCAGGGC
GAACGCAAATCGTTTCCCAAGGCACGGCAAGACTACGGCCACGTCCCGCG
AAGCTATGGGCTAAATCGTTCAGATCCTGAACCAACGGAACGCCCAAAGC
CGACCGAGAGCCGCCCAGCAGGGCGGATATCCAGGTGAGACCTCGCCGGT
CGTGTGCCCCCGTTTCCCGTGGTAGGATGGTTTTTGCCTCCCGCTCGAGC
GGAGCGAGGGAGAGAAATCTTCGGGGCGTGAGACCGTGCGGCCGGCTCTA
ACCACCTGAAACCTTGCCCAACGCGCCAGGGAGAGTACGGGCACGAGGAG
CGAGAGCACGGCGCACAGCGATCTAAATGACGACGCTCTGGATGCCCCTG
CCCCTAAGGCAACCGTGGGCTCGCCGGGGGCTGCGGGGGCTTCCCACGCA
TCAGGGGAGGTGAGACACTGGTGTGAGAGCGCTGCGGATGGACGACATGG
AGCACTGGGGGCTGCGTGGCTCATGCACGGTTTTTCGTGGCGGTTACGCG
GACGTGAAACCACGGGCGGTTTCGCCCGCCAGCACATCTGCACGCCTTTC
TGCAGCACCTTCACGATGCGCGCGGCAGGCGTGCCGCCCACCCTATTGGA
TCCCCCGCTCCCCCGCGCGCGCCCTCCGGCAGTTCGGTGCCGTGCTCAGT
GCGGGCTGGACGTGTGTGCACGCTTTGTGGGTTGTCATCGCTTCGCTGCC
TATATGACCCTCCCCCCCTTTTTCCACCCCTCCGGTGGTTCCCCCGATTC
ACTGGCCTCGCCCCTTGCGCATCTCTCTCTCTCTCTCTTTGTGTGTGTGT
GTGTGTGTGTGTTCCTTTTCTTGTCGTCCTTGACGTGGGTTAAGTGATCC
CTTCCACCCCCTCCCTCCCTCATGACTATGGCCTGCCACAGGCGGGAGCC
GTTGGAAGGTCTTGTGCGCAGGGGAGAGGCACCGGCACGGGCGCGGTGGG
TACCTCGCCGATGTACACGTATCGCAGCGTTGTGGAACGTTTCTTGGCGG
CGACGGTCGGAGTGTTTGTGTGTCTGCGGGGGAAGGGCCTAGGGGGCATG
AAGTACTTGCCATTTGCTGTAGCCCAGTCTGGGACAAGACGTCGTGTGAT
GGTCGCGGAGTCGAGCGGGAGACGATGTGTATGGGGGGCAGGCGCTGATT
TGGCCTTTTATTAGGGCCCTGTCCCCTGCCGTGTGCCTGCGGCACACAGG
TGGTTGTGTTGGGAGCACCGGAGCCTGGCGGGGGGGGGGGTGGCGGGCAG
GCGCGTTCGTGTGATCTGTCCTTGGTCCGTACGGTGGTTCCTCTGGTGGG
AGAACCTCGTTCAGCAGCGGCTGCTGGTCGGGGGTTGCAGGAGGAGGACG
GTGTCGAGGGATGATGCCCTTTGCGTAGCCGACGCGCCCGCTAAGCTTAC
CATGATGCACTCAGCACCTCAAAGCCTAACTTGTCGCCTCTCGCGCTGAT
CGGCCATCAGGGCAACGCCATCGACATCGAGTTGGGGTACCCGGCGGCCG
AGATCCTCCAGTACTGGAGGCAGAAGGAGGTGGCCAAGCAGATTGTCGTA
AAGGAGCCCCCACGCCAGGACTACGTCATGGTGAGCCCCGGACCGGAGCC
CGCCAGTGTGTATATATATATACTGCCGGAAGTATCTTATGTGTACTCAT
GATGTGCTTGCCGTAGTCCCGAGACCATTGACCACGCGTCTCGGTCGAAA
CGGAGCCCGCCAGTGTGGAGGGAGAAGCAGAGGGCGGGGGGCGGGGGGGG
GGGGGGGAAAGAGAAAGAGAAAGAGGGCTGTCTCCAAAGTCGGTCAAGCC
CGAAGGGCTGACAATCTTCTAGAGGGCAGGGGGGGGAGACAGAGTGCTCT
CTCCGGCTGACAAGCTATTGGTCCTACCCCCCCTGCCCCTTCCCCTCCCC
GCCCCCCGCCCACCTTATTCTCTCCTGTTGTCCCTGAAGCAGCCGGAACG
TGAAAGTGATGCCCCCCCCCCCTTCCTCCTTTTGTCTTCTTCTGCTGTCC
GTGAGCCAGCCATCAAAGCAGCTGATGGCCTCCTACTCCTGCCTCCCGCT
CTCCTTGTGTCTTCTTGTGCTTTCACGTTTTGTTCCTCAAGTGTCCCCCC
CCCCCCGGCGCCCGCTCCCACGATATTGTACTGTATCCACCCACCAATGG
TCTCGGGACTACGACAAGCACCACCTGAGTACATACCCGGGTACATATAT
TTATATCCACCAACCGCCGACAAGTGCAACCACCCGTGCATGAACACCCC
AGCCCGCCCTAAGTTTGCCCCCTCGCTGTTGTCTTCCCATCCTCCGACGC
GGCCCCGGCCCCACAGCACCGGCGGTACATGGTGGACTGGTTGAGTGAAG
TGGGGGAGCAGCTGGACCTGCAGGTGTGTGTGTGTGCGCGTCTTTGTGCG
TGTACTCACGTTCGGCCGGCGTTTCTCATCTCTGCGCATGCCCTGGACCC
GAGCGATCCTCGTCTTTTCTCCTTCTCGTGGATGCTGGCCAGCTGTCACT
TTCGCAATCAACAATTGAGCACTGTAGTTCTTGACACGATCACATCTTGG
CATCGGTGTGTGTGCGTGCGCGTGTGTTGTGTGCCGGGGGAGTCCCGAAG
GATGGTGGGTTGAGTGACGGTCCTCACGCACTGCTCGGTATTTGGGGAGT
CAAAACGACGGTTTGGTGCGCTGTCAGTTTGCCGGCGTTTTGCTTGATGT
GATGCGTGCGATATGATGTGTACTGTACACTGACTTACTTTAGTTTGATA
TCACATCACGTGCCGCGTATTTACTGTCGTCCTCTAAGGGTTGACAGCGA
CGCTGTACGGTACCGCAGTTGTGCATGGTCGGCCATGGCAAGGCGCAACC
TGAGTATACAGTATTGGTTGTGCACCGTTGTACACACGAGCCTTGGCAGA
ATGCATGGCGCACACCGTGTCTTGCGTGCTTTAAGGTTCTTCCATGTTTG
GAGCGTCTCGGTCTTGTCTGCCGGTCGGTTCGGCCGACGGTCGTTTCAAC
CACCCACTCGATTGTAGTACAATGTACAAGGTGTAGGCACGTGGTGTACG
AGTACTCACCTTGTGATAGGCTTGCCGTAGTCCCGAGGCCATTGACCACG
CGCCTCGACCAAGACGGAGCAGGGACCTCCCGCCCCTGGCAGATAGGGGG
CAGCACCAATAGCACCGCCCGTCGCAGCTCTCACAGTCGCTTTACAATAT
CGGTCAGGGAGATACCTCTTCCTATGCATGCCACCGGCCGTCGGGCCAGT
ATACTACTGTACTGCACTTTCTGGACTGTGATGTGATGTGACGTGATGTC
AAAAATACTGTACATTACAGTACGCATAGCATCACATCACATCACGTAGT
ACACTACTTTCTGGACTGCCGGCCAGGCCCCTCAGGGCAGCCTGCCGGCC
ATTGGTCTCATGTCCCCACCGTACTATGTCGGGACGGGGCGTGTCGGGTT
GTCACCTCCTTGGCCACGCGCGGGTTTCACACTGTTCCCGGCTTGCCATT
GGGTGCCCGGCACAGCACTGTTTTGTCGTTGCCCCGCGGTTGGGCGGGCC
ATCAGGGGACTGGCTGTCGTGAGCGGGACGCGGTGCAACCCGTTTGGGAT
CTCGTGCATGTGCTGTGTAAAAAAAAAAAAAAGAGTGAGAGGCCCGTCTG
ACAACTGGCAGCGGAAACTGCTGTGCTAGTGTACTGTATTTGCTTTCGTT
ATGAGTTGAATGCGCCCCGCTTGGGTCACCGGGGCTGAATCTCGCACACC
AAAAAGAATGCACATGGTGGCGACTGCTACAGTAGTTATGCTGAGTGAGT
GCTGTACTGTTCTGTATTGCACTCAACTGTACTGTACTGTAGCGCAGCGC
GGTTAGTGTTGTGCATGGGCCTTCTGGGGGCCTTCTGAACCGCCCAGCTC
TTTTTTTTCAACCCCTTGTACTCGGAAGCAGCGTAGAGGAACGTGCTACA
AGTACAGCACCTACAAGTGCTCGTAACTGTTCAACACCCAGCGAGTCGAA
TTCCAGCTACCCCCCCTGACTACAAATACGAGAACACTCAATCTCACACG
CGTGCGATTGTACCTCGTTGCAATTTATACGAATCAATACCCCCTCTGAC
TGACCCCCTCTCTGTCTCCCGGTTGGTGGCGTCTTCTGTCGGGTCAGACG
GTGACCATCCACTCGGCCATCTCCTTCCTGGACGAGATGATGATGCTCTT
GGACTACAGCCACCGCCAATGGAGGCTGCAGGCCGTGTGCTGCCTCAGCG
TCGCAGGTGCCCACCCGACCGCTGACCGACCGACCTGCGTGTCACGCCCG
TCCGTCGTTGCCCGTGGAGGGGGATTGGGATGCACACCTCCTGAGTTGCC
AGCCGCGAGAGACAATGCACCTGTTTCGATGTACGATGTGAAATGAAACT
GCAGCGACTTAGAGTACACATTACATGTCTTTGCGGTACAGCAGCTCCGT
GGAAGTACTGTACAGTACTGTACTGTAGCGTAGTGCTTGTTGACCGCAGG
GGAGACCCTCCCTCAAGCATGGCATCGAGCACAGGGACAGCAGAGAATGA
AGGGGAGGGAAAGGCTTGGAGGGGGGGTTGCGCTTGCGTTTGGGCCCTCG
CCCGCTTCCACTCCCTCTCACCCGCTCACCCGACGCCCGCCGGCTCCGCT
GGGTGGGCCCCGATCGCCCCTCCCACCCACCCTTGCCCCGCCTCACGCCA
GAGTGACCCCGTCCCGCCACGCTCTTTGCGCACATATACCCTGCACACGA
CCCAACCAAATATCCGACGTGCTCTGTCCAATAGGACGGGTGGCCAATGG
CCTCGGCTACAGCTGGCCAGCGGTCCACGAGAAGGAGCAAAGACCAGGAT
CATTCGGGTCCAGGGCATACACAGACGAGAAACCTCGTCCGAACGTGAGT
ACACACACACATACACGACCAAACCGCCTCCCTCGCCCACCGGCTGCTGC
GCCTTGGTTGGGCTCCTCTGCTCTGCGAAACCGCCGAACAGCCAAGTACG
AGGAGGCAGAGTGTAACATGCCCATGATCTCCGAGCTGGCGGACTCCACG
GAGCTGAGCTTGACCACGTCCATTGTCACCAGGGGGGAGCTGGAGCTGGC
AAAGAGGTACGCAAGCACAACCCTTTTACCCGAGGTTATGCCGCAAGACA
AGCCAATATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCATTGA
CCCCGTGCCTCGTGCGAGGCAGAGCAGGACCCCTCCCTCCCCTGGCAGAG
CCGAGGTGGGAGGGGGTGGCACCCCCCCTGCCAGAGGTGGAGGGGTGGCC
AAGTCCATACCCCCATGAATGAGTACACATATATATACCCAAGAGGTGAG
CAAGCTCAGCCCTTTTACCCCTACTAAATTGGACTTACAAACTGAAACCC
TATGATTATGCGGACCTCAGGGGTAAAACGGTTAACCCTTAAGGGCGGTG
GTAGCGGTATACTCGGCTCTAGTGCTGTGTCAACATCTGTGGGGTGGATA
CGTGTCTGTTGTGTGCGCAGTGCAATGCTGGCCGTCCTCTTTCTTCTTGG
GTGAGTGAAGTTGGCACAGACTGCAAAAGCAGTACTACTAGTACTCGTAG
GTAAAGTTGGGCACGCAGGATGGTATCGTGCTTGCAAGAGCTTTGTCGCA
GACCAGCGTGTTGAACTGAAGATGTGCATGACTCTACGCAGGTGGAGGTA
TGAGCTAGGCCTTGGGGGGGGGGGCACGGCAGAGTGCGTGGTTACCCGCG
CTCACCCCCTTAGTGTACATGTACTTTGAAGCGCTTGTTCAAGCCAGCAC
TCACCGCACCCCCACCCGCCCCCACCGCCCGGCTCCCCTTCCCGCTTGTC
CTGTCCATCCCCCACACTGTGTGTGTGTGTGTTGTGCGTGCGCGCGTGTG
TGCGTGCGTGTGCATGTGCGTGTGTGCATGTGCACGCCCTGGCGCCCGCG
CCCCCGCCCCTCCCAACAACCTCCGGAAAAACAAAAAAAAACGGTTTCGG
AATCCCCAGGCTGAAGTGGGACGTATCGCGCGTGACGGCCATGCACTTCC
TGGGATACTACCTGGCCAAGGGCGTGACCCTTCCTCAGGACCGCTGCCAG
GGCCGTCCGTTGGTGGACAAGGTGAGTGATTCGTATAAATTGTAACGAGG
TACAATCGCACGTGTGTGAGATTGGCTGTTCTCGTGTTTACTGTAGTACA
GTAGTTGTGTTCGAGTACCATTTAAGAATCGAATGGTGGACAAGGTGGGT
TTTGAGCAGATTGGTGTGGCTGTGGCCGATTTTAGTTGACAGCCATGGTT
TCCGCTCCTGAAGGCGGACTGGAACGCCGGGACGGGAGTTTCGGTTTCGG
GCTGGTGTGAACGCAAAAGAGGGCGAGAGCGACGGCGGTGGCGGTGGTGG
GGATCATTGGCTTACCGTTGGCACCTTGATCCATATTTTACTTTGGAGTG
TGGGACTGTGGCTAGCCCTGGTTTTTTGTTTGATGAAACCTCCGTCTGCC
CCGCCCTTTTTTAGCACGCCCAACTGCGTGTGTCGACTCTATTACATATA
TATATATATATATATATGGTGGAATCAACGGAACGCTTATCATCCATTGA
TTAGCGATTCCGAAGAACTCTTTTTACCATTGTTGTCACTGTCATTGCTT
TTGTTGTTGTTGCCGTCTCCAACCAACCCTTGATTGTCACTGCCATTGTC
CACAGGTGGTGCGGTACATGAAGAAGTACGTGGAGTTCTTTGCCAACCTG
TGCCAGCAGGACTTCCACTTCCAGCAGTACCTGCCCTCCAAGCTCGCCGC
GGCGTCTGTGCTGGCCGCACGGCGGGCGCTCTGCATAAGGTATGAGTACC
ACTGTACAGTACAGTACAACAGGATTGCTGTACAGTACAAGAGGATGTGC
TTTTAGGAAAGTACCTGGTAGTCTAGTCGAATACCTACTACGTACTGCGA
AGTGGGGCTGTGGTTCTTTCCAATACAAGTACTTTGTGCCACAGAGTTGT
AGATAGTTTGTACCCATGTCATGCTGGTGTGCGGTGCCGGTGCTCCTGCG
TTGGCTGCCAGCCTTTGTCAAGCTCATGTGCTCCCGCCCACCTGCCTGCC
CTTCCCATGCCCCCTGCCTCCCTCTCCCCCCTCCTCCTCAAATTCCGGGT
CGCAGGACCCTTTATAGACAGTCCGTAAACAGTCGGTCTGACTGATCCTC
CCCACGCTCGCCTGCCTCCCCCTCCCCCTCCTGTGCCACCATCGCCGCCG
CCGCCACCGCCGTGACCACAGCCCCATCTGGAGGCCCGAGCTCACGGAAC
TCACGGGGTACTCCCACGACGCCGCCGCCGAGTGCGGTGAGAAGCTGTGG
TCCTTCTACGAGACCATGTTCCCCACCCACCGCCCGCTCCGCACCGAGGC
CACCAGCAGCAAGAAGCCCTCTTCTTCCTCCTCGGCTGCGCCGGCGGCGG
CGACCGCTGCGTCTGCGTCAGGCTCAGCGGCAGAAGCTTCCAAGGGCGGC
GGCGGCGGCGGTGGCGGGGCATCGCGAACGGCGTTCAGCAAGCGGGCGCC
CGCCGCGGGCGTGGTGGCACCGCACAGCCGCATCGTGGAGTGAAGGCAGC
AGGCAGGATAGACGGAGGGAGGGAGGGAGGAAGGGA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig83:124529..132414+

>mRNA_S-ischiensis_contig83.19959.1 ID=mRNA_S-ischiensis_contig83.19959.1|Name=mRNA_S-ischiensis_contig83.19959.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3180bp|location=Sequence derived from alignment at S-ischiensis_contig83:124529..132414+ (Schizocladia ischiensis KU_0333)
ATGTCATCGTTGTCGTCTTCCTCAAGACAAAGCGGGGGCCTCATGCAGGC
GTTGGGTTCACTCAACCCCTTCAAAAACCCTGTTTTCAAGCAGGGCGAAC
GCAAATCGTTTCCCAAGGCACGGCAAGACTACGGCCACGTCCCGCGAAGC
TATGGGCTAAATCGTTCAGATCCTGAACCAACGGAACGCCCAAAGCCGAC
CGAGAGCCGCCCAGCAGGGCGGATATCCAGATGTCATCGTTGTCGTCTTC
CTCAAGACAAAGCGGGGGCCTCATGCAGGCGTTGGGTTCACTCAACCCCT
TCAAAAACCCTGTTTTCAAGCAGGGCGAACGCAAATCGTTTCCCAAGGCA
CGGCAAGACTACGGCCACGTCCCGCGAAGCTATGGGCTAAATCGTTCAGA
TCCTGAACCAACGGAACGCCCAAAGCCGACCGAGAGCCGCCCAGCAGGGC
GGATATCCAGGGAGAGTACGGGCACGAGGAGCGAGAGCACGGCGCACAGC
GATCTAAATGACGACGCTCTGGATGCCCCTGCCCCTAAGGCAACCGTGGG
CTCGCCGGGGGCTGCGGGGGCTTCCCACGCATCAGGGGAGGGAGAGTACG
GGCACGAGGAGCGAGAGCACGGCGCACAGCGATCTAAATGACGACGCTCT
GGATGCCCCTGCCCCTAAGGCAACCGTGGGCTCGCCGGGGGCTGCGGGGG
CTTCCCACGCATCAGGGGAGGCGGGAGCCGTTGGAAGGTCTTGTGCGCAG
GGGAGAGGCACCGGCACGGGCGCGGCGGGAGCCGTTGGAAGGTCTTGTGC
GCAGGGGAGAGGCACCGGCACGGGCGCGGGCAACGCCATCGACATCGAGT
TGGGGTACCCGGCGGCCGAGATCCTCCAGTACTGGAGGCAGAAGGAGGTG
GCCAAGCAGATTGTCGTAAAGGAGCCCCCACGCCAGGACTACGTCATGGG
CAACGCCATCGACATCGAGTTGGGGTACCCGGCGGCCGAGATCCTCCAGT
ACTGGAGGCAGAAGGAGGTGGCCAAGCAGATTGTCGTAAAGGAGCCCCCA
CGCCAGGACTACGTCATGCACCGGCGGTACATGGTGGACTGGTTGAGTGA
AGTGGGGGAGCAGCTGGACCTGCAGCACCGGCGGTACATGGTGGACTGGT
TGAGTGAAGTGGGGGAGCAGCTGGACCTGCAGACGGTGACCATCCACTCG
GCCATCTCCTTCCTGGACGAGATGATGATGCTCTTGGACTACAGCCACCG
CCAATGGAGGCTGCAGGCCGTGTGCTGCCTCAGCGTCGCAGACGGTGACC
ATCCACTCGGCCATCTCCTTCCTGGACGAGATGATGATGCTCTTGGACTA
CAGCCACCGCCAATGGAGGCTGCAGGCCGTGTGCTGCCTCAGCGTCGCAG
GACGGGTGGCCAATGGCCTCGGCTACAGCTGGCCAGCGGTCCACGAGAAG
GAGCAAAGACCAGGATCATTCGGGTCCAGGGCATACACAGACGAGAAACC
TCGTCCGAACGTGAGTACACACACACATACACGACCAAACCGCCTCCCTC
GCCCACCGGCTGCTGCGCCTTGGTTGGGCTCCTCTGCTCTGCGAAACCGC
CGAACAGCCAAGTACGAGGAGGCAGAGTGTAACATGCCCATGATCTCCGA
GCTGGCGGACTCCACGGAGCTGAGCTTGACCACGTCCATTGTCACCAGGG
GGGAGCTGGAGCTGGCAAAGAGGACGGGTGGCCAATGGCCTCGGCTACAG
CTGGCCAGCGGTCCACGAGAAGGAGCAAAGACCAGGATCATTCGGGTCCA
GGGCATACACAGACGAGAAACCTCGTCCGAACGTGAGTACACACACACAT
ACACGACCAAACCGCCTCCCTCGCCCACCGGCTGCTGCGCCTTGGTTGGG
CTCCTCTGCTCTGCGAAACCGCCGAACAGCCAAGTACGAGGAGGCAGAGT
GTAACATGCCCATGATCTCCGAGCTGGCGGACTCCACGGAGCTGAGCTTG
ACCACGTCCATTGTCACCAGGGGGGAGCTGGAGCTGGCAAAGAGGCTGAA
GTGGGACGTATCGCGCGTGACGGCCATGCACTTCCTGGGATACTACCTGG
CCAAGGGCGTGACCCTTCCTCAGGACCGCTGCCAGGGCCGTCCGTTGGTG
GACAAGGCTGAAGTGGGACGTATCGCGCGTGACGGCCATGCACTTCCTGG
GATACTACCTGGCCAAGGGCGTGACCCTTCCTCAGGACCGCTGCCAGGGC
CGTCCGTTGGTGGACAAGGTGGTGCGGTACATGAAGAAGTACGTGGAGTT
CTTTGCCAACCTGTGCCAGCAGGACTTCCACTTCCAGCAGTACCTGCCCT
CCAAGCTCGCCGCGGCGTCTGTGCTGGCCGCACGGCGGGCGCTCTGCATA
AGGTGGTGCGGTACATGAAGAAGTACGTGGAGTTCTTTGCCAACCTGTGC
CAGCAGGACTTCCACTTCCAGCAGTACCTGCCCTCCAAGCTCGCCGCGGC
GTCTGTGCTGGCCGCACGGCGGGCGCTCTGCATAAGCCCCATCTGGAGGC
CCGAGCTCACGGAACTCACGGGGTACTCCCACGACGCCGCCGCCGAGTGC
GGTGAGAAGCTGTGGTCCTTCTACGAGACCATGTTCCCCACCCACCGCCC
GCTCCGCACCGAGGCCACCAGCAGCAAGAAGCCCTCTTCTTCCTCCTCGG
CTGCGCCGGCGGCGGCGACCGCTGCGTCTGCGTCAGGCTCAGCGGCAGAA
GCTTCCAAGGGCGGCGGCGGCGGCGGTGGCGGGGCATCGCGAACGGCGTT
CAGCAAGCGGGCGCCCGCCGCGGGCGTGGTGGCACCGCACAGCCGCATCG
TGGAGTGACCCCATCTGGAGGCCCGAGCTCACGGAACTCACGGGGTACTC
CCACGACGCCGCCGCCGAGTGCGGTGAGAAGCTGTGGTCCTTCTACGAGA
CCATGTTCCCCACCCACCGCCCGCTCCGCACCGAGGCCACCAGCAGCAAG
AAGCCCTCTTCTTCCTCCTCGGCTGCGCCGGCGGCGGCGACCGCTGCGTC
TGCGTCAGGCTCAGCGGCAGAAGCTTCCAAGGGCGGCGGCGGCGGCGGTG
GCGGGGCATCGCGAACGGCGTTCAGCAAGCGGGCGCCCGCCGCGGGCGTG
GTGGCACCGCACAGCCGCATCGTGGAGTGA
back to top