mRNA_S-ischiensis_contig83.19952.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19952.1
Unique NamemRNA_S-ischiensis_contig83.19952.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:112922..113819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size464
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.5017822-CDS-S-ischiensis_contig83:112921..1130181622817323.5017822-CDS-S-ischiensis_contig83:112921..113018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 112922..113018 +
1695741026.892432-CDS-S-ischiensis_contig83:112921..1130181695741026.892432-CDS-S-ischiensis_contig83:112921..113018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 112922..113018 +
1622817323.5129683-CDS-S-ischiensis_contig83:113453..1138181622817323.5129683-CDS-S-ischiensis_contig83:113453..113818Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 113454..113818 +
1695741026.9044285-CDS-S-ischiensis_contig83:113453..1138181695741026.9044285-CDS-S-ischiensis_contig83:113453..113818Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 113454..113818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19952.1prot_S-ischiensis_contig83.19952.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 112922..113818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19952.1

>prot_S-ischiensis_contig83.19952.1 ID=prot_S-ischiensis_contig83.19952.1|Name=mRNA_S-ischiensis_contig83.19952.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=154bp
EELHVVLEVLPLEPEVLKCCSEHPLIARAVVEGYFSVGTALADSLPRHSD
SESYPAPRSFSSGGIPTCSRGRSGPGGNALAGHTRGTCDGRADPGRSGPN
KISLLVVSDALLGTTTASADAAPLHPALACAAHTVLAEGGVVMCLEGLSD
AGIG
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mRNA from alignment at S-ischiensis_contig83:112922..113819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19952.1 ID=mRNA_S-ischiensis_contig83.19952.1|Name=mRNA_S-ischiensis_contig83.19952.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=898bp|location=Sequence derived from alignment at S-ischiensis_contig83:112922..113819+ (Schizocladia ischiensis KU_0333)
GAGGAGCTGCATGTTGTGCTTGAGGTTCTCCCGCTTGAACCCGAAGTGCT
CAAGTGCTGCTCGGAGCACCCGCTTATTGCTAGGGCAGTTGTTGAAGGTA
CGCCTTGATGGATGAGCATGGTTTGCACGACCACCATTGTGCATGCGTAC
AGCTCTTGCCTGACGCCTAGTAGTGCTTCGAAGTTACAGTGGGATACCTA
CTGACTTGCCAGCTCAAAGTACTGTCTACGATGTGATGGCGTCCTGTGTC
ACTGGCAACGTGTGCGGAAGCGGTTTTCAACTCTTCACTCGCCTCGTGCC
GTCCCGCGTGCTTGGTGAGCAAGCCGCGTGAACATTTGAAGCTCTTTCAT
GCTGCCGACAGCTTGCCATTTGCCACACCCTTCTCCGCCCTTCGTCTGTC
CAGATCACGACAACAACTGTCTGGAATTTCGGTGTACGAGTATTTGCACC
CTCAGGTGCTCCCCCCGCGCCCCCAATGCCTGCCCACATCTCAAGCCCGT
CTCACGCACCCTTCCCCCCATCTCTCCACTAGGCTATTTTTCCGTGGGAA
CGGCCCTCGCGGACAGCCTGCCCCGGCACAGCGACTCGGAAAGCTACCCG
GCGCCCAGATCGTTTAGTAGCGGGGGCATTCCGACATGCAGCAGAGGTCG
CTCGGGCCCCGGCGGCAACGCGCTTGCTGGCCACACCCGGGGCACCTGTG
ACGGTCGGGCTGACCCGGGAAGATCAGGCCCGAATAAGATATCGCTGCTC
GTTGTGTCAGACGCCCTCCTTGGGACTACAACCGCCTCCGCAGATGCCGC
ACCTCTGCACCCAGCCCTGGCCTGTGCGGCCCACACCGTGCTCGCGGAAG
GCGGGGTGGTTATGTGCCTCGAAGGGCTTTCCGACGCTGGCATCGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:112922..113819+

>mRNA_S-ischiensis_contig83.19952.1 ID=mRNA_S-ischiensis_contig83.19952.1|Name=mRNA_S-ischiensis_contig83.19952.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=924bp|location=Sequence derived from alignment at S-ischiensis_contig83:112922..113819+ (Schizocladia ischiensis KU_0333)
GAGGAGCTGCATGTTGTGCTTGAGGTTCTCCCGCTTGAACCCGAAGTGCT
CAAGTGCTGCTCGGAGCACCCGCTTATTGCTAGGGCAGTTGTTGAAGGAG
GAGCTGCATGTTGTGCTTGAGGTTCTCCCGCTTGAACCCGAAGTGCTCAA
GTGCTGCTCGGAGCACCCGCTTATTGCTAGGGCAGTTGTTGAAGGCTATT
TTTCCGTGGGAACGGCCCTCGCGGACAGCCTGCCCCGGCACAGCGACTCG
GAAAGCTACCCGGCGCCCAGATCGTTTAGTAGCGGGGGCATTCCGACATG
CAGCAGAGGTCGCTCGGGCCCCGGCGGCAACGCGCTTGCTGGCCACACCC
GGGGCACCTGTGACGGTCGGGCTGACCCGGGAAGATCAGGCCCGAATAAG
ATATCGCTGCTCGTTGTGTCAGACGCCCTCCTTGGGACTACAACCGCCTC
CGCAGATGCCGCACCTCTGCACCCAGCCCTGGCCTGTGCGGCCCACACCG
TGCTCGCGGAAGGCGGGGTGGTTATGTGCCTCGAAGGGCTTTCCGACGCT
GGCATCGGAGCTATTTTTCCGTGGGAACGGCCCTCGCGGACAGCCTGCCC
CGGCACAGCGACTCGGAAAGCTACCCGGCGCCCAGATCGTTTAGTAGCGG
GGGCATTCCGACATGCAGCAGAGGTCGCTCGGGCCCCGGCGGCAACGCGC
TTGCTGGCCACACCCGGGGCACCTGTGACGGTCGGGCTGACCCGGGAAGA
TCAGGCCCGAATAAGATATCGCTGCTCGTTGTGTCAGACGCCCTCCTTGG
GACTACAACCGCCTCCGCAGATGCCGCACCTCTGCACCCAGCCCTGGCCT
GTGCGGCCCACACCGTGCTCGCGGAAGGCGGGGTGGTTATGTGCCTCGAA
GGGCTTTCCGACGCTGGCATCGGA
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