mRNA_S-ischiensis_contig83.19946.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19946.1
Unique NamemRNA_S-ischiensis_contig83.19946.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:65780..66175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.031485-UTR-S-ischiensis_contig83:65779..658331622817325.031485-UTR-S-ischiensis_contig83:65779..65833Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 65780..65833 +
1695741027.8176744-UTR-S-ischiensis_contig83:65779..658331695741027.8176744-UTR-S-ischiensis_contig83:65779..65833Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 65780..65833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.0442936-CDS-S-ischiensis_contig83:65833..661751622817325.0442936-CDS-S-ischiensis_contig83:65833..66175Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 65834..66175 +
1695741027.8273914-CDS-S-ischiensis_contig83:65833..661751695741027.8273914-CDS-S-ischiensis_contig83:65833..66175Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 65834..66175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19946.1prot_S-ischiensis_contig83.19946.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 65834..66175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19946.1

>prot_S-ischiensis_contig83.19946.1 ID=prot_S-ischiensis_contig83.19946.1|Name=mRNA_S-ischiensis_contig83.19946.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
MPQLPHHRPCRRLGRRLRKKTHTHTKERVTASAARTRPGGQRGGVRRERF
CPSSYMIACHFSHTISCHFFPYLPCSSYSKYVSWGNVRYTRRKFSRVYHH
HRPFMFCDERPAQP
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mRNA from alignment at S-ischiensis_contig83:65780..66175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19946.1 ID=mRNA_S-ischiensis_contig83.19946.1|Name=mRNA_S-ischiensis_contig83.19946.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=396bp|location=Sequence derived from alignment at S-ischiensis_contig83:65780..66175+ (Schizocladia ischiensis KU_0333)
CCACCCCCTCAGCGCGGTGTGTGTCAGCCCCCCCTGTAGCAGGTCGCTCC
TTTCATGCCCCAGCTGCCGCACCACCGCCCTTGCCGCCGCCTCGGAAGGC
GTCTGAGGAAAAAAACACACACACACACAAAGGAACGGGTCACGGCCAGC
GCCGCCCGCACCCGGCCAGGTGGCCAGCGGGGGGGGGTGAGGAGAGAACG
GTTTTGTCCTTCTTCGTACATGATTGCGTGTCATTTTTCGCACACGATTT
CGTGTCATTTTTTTCCATATTTGCCATGTTCTTCCTACAGTAAGTACGTT
TCCTGGGGAAATGTTCGCTACACACGGCGAAAGTTTTCGCGAGTATATCA
TCACCATCGCCCGTTCATGTTCTGTGACGAACGGCCTGCACAACCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:65780..66175+

>mRNA_S-ischiensis_contig83.19946.1 ID=mRNA_S-ischiensis_contig83.19946.1|Name=mRNA_S-ischiensis_contig83.19946.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig83:65780..66175+ (Schizocladia ischiensis KU_0333)
ATGCCCCAGCTGCCGCACCACCGCCCTTGCCGCCGCCTCGGAAGGCGTCT
GAGGAAAAAAACACACACACACACAAAGGAACGGGTCACGGCCAGCGCCG
CCCGCACCCGGCCAGGTGGCCAGCGGGGGGGGGTGAGGAGAGAACGGTTT
TGTCCTTCTTCGTACATGATTGCGTGTCATTTTTCGCACACGATTTCGTG
TCATTTTTTTCCATATTTGCCATGTTCTTCCTACAGTAAGTACGTTTCCT
GGGGAAATGTTCGCTACACACGGCGAAAGTTTTCGCGAGTATATCATCAC
CATCGCCCGTTCATGTTCTGTGACGAACGGCCTGCACAACCGATGCCCCA
GCTGCCGCACCACCGCCCTTGCCGCCGCCTCGGAAGGCGTCTGAGGAAAA
AAACACACACACACACAAAGGAACGGGTCACGGCCAGCGCCGCCCGCACC
CGGCCAGGTGGCCAGCGGGGGGGGGTGAGGAGAGAACGGTTTTGTCCTTC
TTCGTACATGATTGCGTGTCATTTTTCGCACACGATTTCGTGTCATTTTT
TTCCATATTTGCCATGTTCTTCCTACAGTAAGTACGTTTCCTGGGGAAAT
GTTCGCTACACACGGCGAAAGTTTTCGCGAGTATATCATCACCATCGCCC
GTTCATGTTCTGTGACGAACGGCCTGCACAACCG
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