mRNA_S-ischiensis_contig83.19945.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19945.1
Unique NamemRNA_S-ischiensis_contig83.19945.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.19945.1 vs. uniprot
Match: D7G5G5_ECTSI (Serine/threonine-protein kinase Nek3 (NimA-related protein kinase 3) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.280e-13
Identity = 64/177 (36.16%), Postives = 93/177 (52.54%), Query Frame = 1 
Query:  244 GAEGGQAQEGADAETSAPAPKPADSLQLSVSPLITDPNQQLEEAEKRFQEAMSSGLPLGGGMTPAQYRAMLARDRAIKKVLLRRKLKAKQRRGEMRYKGYPFTK-IPSEQMAAWVGEIKDEDKQRRLQLREATARAKAKRQEASVVRGRRNQLKVWLIRRLVEAS-GHADLMTKAIA 768
            G E G+  E  D   S+P  +P  S  ++ +  +  PN++LE AEK +Q                              +LLRRK+KAK++ GEM  +  PF + IP +++  W  EI+DE++  R Q R   A+ + +R + S+ RG RNQLK WLIR LV ++ G  DLM KAIA
Sbjct:  370 GGESGEEHETPDGTLSSP--RPTSSTSVNTNQRLMTPNERLELAEKNYQ------------------------------LLLRRKIKAKRKSGEMA-RARPFCRRIPLDEVQGWKKEIEDEEQLLRAQRRADNAKRRKERADDSLKRGERNQLKAWLIRHLVASNEGDGDLMAKAIA 513
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5G5_ECTSI3.280e-1336.16Serine/threonine-protein kinase Nek3 (NimA-related... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:61252..65767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size776
Cds size774
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817326.415923-CDS-S-ischiensis_contig83:61251..613361622817326.415923-CDS-S-ischiensis_contig83:61251..61336Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 61252..61336 -
1695741028.5688043-CDS-S-ischiensis_contig83:61251..613361695741028.5688043-CDS-S-ischiensis_contig83:61251..61336Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 61252..61336 -
1622817326.4263604-CDS-S-ischiensis_contig83:61944..620631622817326.4263604-CDS-S-ischiensis_contig83:61944..62063Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 61945..62063 -
1695741028.5824788-CDS-S-ischiensis_contig83:61944..620631695741028.5824788-CDS-S-ischiensis_contig83:61944..62063Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 61945..62063 -
1622817326.436706-CDS-S-ischiensis_contig83:62612..627021622817326.436706-CDS-S-ischiensis_contig83:62612..62702Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 62613..62702 -
1695741028.5920923-CDS-S-ischiensis_contig83:62612..627021695741028.5920923-CDS-S-ischiensis_contig83:62612..62702Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 62613..62702 -
1622817326.4487002-CDS-S-ischiensis_contig83:63438..635281622817326.4487002-CDS-S-ischiensis_contig83:63438..63528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 63439..63528 -
1695741028.6033838-CDS-S-ischiensis_contig83:63438..635281695741028.6033838-CDS-S-ischiensis_contig83:63438..63528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 63439..63528 -
1622817326.4643586-CDS-S-ischiensis_contig83:64118..642761622817326.4643586-CDS-S-ischiensis_contig83:64118..64276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 64119..64276 -
1695741028.6132252-CDS-S-ischiensis_contig83:64118..642761695741028.6132252-CDS-S-ischiensis_contig83:64118..64276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 64119..64276 -
1622817326.4784498-CDS-S-ischiensis_contig83:64864..650491622817326.4784498-CDS-S-ischiensis_contig83:64864..65049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 64865..65049 -
1695741028.6241536-CDS-S-ischiensis_contig83:64864..650491695741028.6241536-CDS-S-ischiensis_contig83:64864..65049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 64865..65049 -
1622817326.4922364-CDS-S-ischiensis_contig83:65720..657671622817326.4922364-CDS-S-ischiensis_contig83:65720..65767Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 65721..65767 -
1695741028.6346493-CDS-S-ischiensis_contig83:65720..657671695741028.6346493-CDS-S-ischiensis_contig83:65720..65767Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 65721..65767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19945.1prot_S-ischiensis_contig83.19945.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 61252..65767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19945.1

>prot_S-ischiensis_contig83.19945.1 ID=prot_S-ischiensis_contig83.19945.1|Name=mRNA_S-ischiensis_contig83.19945.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=258bp
GRGRVTQTWEGYWCLRISPVFFGRSALAKLETKPAARARRSAAAAVEAAA
VAAAANAAADAAVVAAYAGGGEEKPPQEPAEGAEGGQAQEGADAETSAPA
PKPADSLQLSVSPLITDPNQQLEEAEKRFQEAMSSGLPLGGGMTPAQYRA
MLARDRAIKKVLLRRKLKAKQRRGEMRYKGYPFTKIPSEQMAAWVGEIKD
EDKQRRLQLREATARAKAKRQEASVVRGRRNQLKVWLIRRLVEASGHADL
MTKAIAAA
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mRNA from alignment at S-ischiensis_contig83:61252..65767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19945.1 ID=mRNA_S-ischiensis_contig83.19945.1|Name=mRNA_S-ischiensis_contig83.19945.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4516bp|location=Sequence derived from alignment at S-ischiensis_contig83:61252..65767- (Schizocladia ischiensis KU_0333)
GGCAGGGGGCGGGTGACGCAGACCTGGGAAGGGTACTGGTGCCTCAGGTG
TGGGACACAGCATGCATACTTCCGTATATACCATGTTCGATGCTCATAGC
CTTTGGCAGAGAGAACTATTGTACGAGCATGTGCTTGGAACTACTCTGTA
GCTACAAAACCTCGCTGTACAGTTGTACTTCCGGAAGTACCTAGAACCTC
GCTGTACAGTTGTACTTCCGGAAGTACCTAGAAGTATATGCAGAAACGTG
AGGTGCGCAGAACTATAGATGTACTCGTGGTGTCCGTGCCGTACCTAGTC
CAGAGACCTTCGACGACATTGCCGCTTTTCGTGCTCGTACTCTACATGTT
ACGTGTACTTCAAGTATTTCAAAAGTGCTTACGAGTACTCGAGTACATGT
TCTTCAAGGTACACCTTTTGGACCACCGCACAGTAGAGTAGCGTAGTACT
AGTACGAGTTCAGTACTACAGCAGTGGAAGTAGTGCGCTTGAATTATATT
GCTTCCAAGAGCATGCGTGTGCCAGGCGGCGTGTCACGCAGTGGCGAGGC
ATCGGGATGGGACAGCTACACCTTCTGGCCAGTATTAACAGGAACAACAC
AGGGCGATGTGCGGCCACGTCACTGAAGACCTCAACAGTGGCCTTCCTTA
GCTCTTCTGGCCAGTAGCTGGCCAACCAATCTCAACAAATCGATTTGGAA
TACCGCACAACTGGCCAGGATCTCGCCCGTCTTCTTTGGGAGGAGTGCCC
TCGCCAAACTGGAGACCAAGCCCGCAGCACGGGCGCGCCGTTCAGCGGCG
GCGGCGGTAGAGGCGGCGGCAGTGGCGGCAGCAGCGAACGCAGCTGCGGA
TGCCGCTGTTGTGGCGGCATATGCTGGAGGTGGAGAGGAGAAGCCTCCAC
AAGGTAGATGATCCCCTACTGCTTCTTGTGCTTGCGTGCTGTGAAGTACT
AATACTGCTGTACAGCTGCAGTAGTACAGTAGTCAATGAAGTCCATCATG
TAGATACGCAGCAGTACTACTAGTAGGTGCTCTACCCTTTCAGCAGCGCT
CATCATACCAGGCGGTCCTTAGTAGTGCATATGCAGTACAGATGGCCGCT
GTGTAGCAGTACAACACTCGAGCACTGTTGTACTGTACTCGAGTACTGTA
GTAGTGGTACGAGTAGTAGAGTTGCTGTTCAGTACAGAACTCTGCTTGCT
TGCTGCTGCTGTGGTGGCGGCCATTCTTGTGCTGTCGCGGTCGCTATGGT
TGTCGCTGCTGCTGCGGCGGCTGCTGTTGTCGGTGCGATTTCGTCTCTCC
CCTGGCTGGTTTGATGACACACAGCCCCACCTGCCATTTCCTCAGGCTGC
AGCCCCTTCCGTGCTCTGCGGCCAAGGACACCAGAGCTTGGACCTCCCCA
TAAGTCACATGCTTGGTAAACAGTGCGCCTGTCAACCTCACCGGCCTCCG
CTGACCAATCGACCGCCTGCCGGCCATTACAACCGCGGCAGAGCCCGCGG
AGGGGGCAGAGGGGGGGCAGGCGCAGGAGGGGGCAGACGCGGAAACTTCC
GCCCCAGCACCAAAGCCTGCGGACTCTCTGCAGCTGTCAGTTAGCCCCCT
CATCACTGACCCCAACCAGCAGCTGGAGGAGGCCGAGAAGAGGTTCCAGG
TGGGCAGTCACAACCACCACAACACGGTAGATTATTCCTCCTCACCCTCC
TCCTCCTCCTCCTCCTACTCCTCCTACTCCCGCCCTTCTCTCCCGCTCTA
CTGGTCGATCTGCCCTCCGGTTTCTGGAGCCCTTTCGACTTCCCTTGATT
TGGCTGTTGAAAGGGAAACAGAGCTCGTCCGTTGTCAGAGACACCAAATG
TACAGTAGAGAGCTTCCTTTACTACTCTATGGGCTGCCTGGTCTAGTACC
CATATCGAGTCTTGTTTCTCCAATTGCTGGGGTCGACTTCACTGCAAGTT
ACACCCCGTGAGTACTGTACAGTAAGTACGAAGCAGTACACCTCGCCTGA
GAAAAAGCTCCCTGCCTGCTTTGTCATGAGGCCCCACCTTTCATGGCTGA
GGGGTCAAGAGCTACTCTACGGAGTCTATAAAGAAACACCTGGTGCTACA
GTGCTTCTGCATGCTTTGCACCTACTTGGCACACAAGCCTTCTGCCCATC
AATTTCACTTCTGCACCTACTATGCAGTACTTACCTGGTACTGCAATGAA
AACCGTTTCCTACAATACTGCCCCTTTCCCCCCCCACAGGAAGCCATGTC
GTCGGGGCTGCCTTTAGGAGGTGGCATGACGCCAGCGCAGTACCGTGCAA
TGCTAGCGCGTGACAGGGCCATCAAGAAGGTGGGAGACGACTGTAGGGGC
TATACTGCAGGTCCTTCTGCACAATACACAAGTATTCCCACAACACATCA
GGGCAGGACTTCGTTGACGCTTGTACTCACTGCAGGTCCTTTTGTACTTT
GAATTATTGTTCAGTACACAAGCACATACTCCAAGAAATGTGTGACATTG
AAGTGCTGCACTGCAGCAGTGTCATGAAAGTCTGTCAGCGGCAAGGGCGT
TTCAGCCGCTGGAAATGAGACTGCCTCATCGCACTGGTACCCGTTCTGAC
GGGTGGCCACCAAATACAACGCACCCCACCCCTTCCACGCCCCACCACCA
TCTGAACTGACGGGTCCATGCAACTTAATTGGCCTACTTGTAGGGGGTTC
TATGGGAACATGAGGCGTTTTTGGCATATGCCCACCCGATAGAGCGGACG
CTTGACCGTGGGATAGTAGTAGGGTAAGAAGGGTGTGGTTTCCTTCTCCT
GAAGATGCAGGTCCTTCCGAAGGCATGGACGTCCGTTTATCACTGGCTCG
ACCCGTGAGCGGTGCTACTTACTGTAGTATAAAGGCAGTCACATTGTGAA
AACTCTTTTCCTGGGCTGCAGGCCCTTCTGAGGCGCAAATTGATGGCCAA
GCAATGGCACATAAGAGGGATTTCTTGCAGACACTCACCCGTAGGAGTGG
CAGCTTGGCGTGCAAGGTACAGCAGTATCGATGGCAACGTGTGATTTCCT
CCTCCTGCTCCGCAGGTCCTTCTCAGGCGCAAGCTCAAGGCCAAGCAGCG
CCGTGGGGAGATGCGCTACAAGGGATACCCCTTCACCAAGATACCCAGCG
AGCAGGTGCGGCCGGCCACCGGGAATCAATCGCGCGTGGCCAGGGGTGGG
GGCCAGGGCGGAGGGGCAGGGCGGGGACTTCTCTCGTGATTTGCCTGCCA
TAGCCTTACTGTACGGCTGTTGACCAAGCGTCCCATGGGGGAGACCCAAG
AGGACAGGGCACAAGGTGTTCCTATTTTGCTGGGGGAGTGGGTGGAGCGC
CACACACTGGTTTTCCCTTGGGATGAAGGCACGGCCAGCCTTGATGCATG
GAACTTCATTACGAGATAACTACACGCCATGAGGAAGGAGACAAGAGATT
TGTTTCTCCCCCCGGACCCGTCCATCCAACTTATTGCCTTGGGTGATGTC
CATCCAACTTATTGCCTTGGGTGAAGAACGGCATGGCCTTCAAGCACGGC
GACTTACTTTTGTAGCCGAGCTCAAAAACAAGGGACCGACCTGATGAAAC
CATGTGCCCTGAACTCGCGTGAGTAGGGACACCTCTTCTTTCCCACTCGC
TTGTTTGTGTTCATGCAAAAAACCATGTGCCCAAAAATCTCGGCTTCCAA
TCAGATGGCGGCGTGGGTGGGGGAGATAAAGGACGAGGACAAGCAGAGGC
GTCTGCAGCTGCGGGAGGCAACGGCGAGGGCCAAGGCTAAGCGCCAGGAG
GCGTCCGTGGTGCGAGGACGCAGGTGGGAAGGAAGGGGGCTGTGGCGGCA
TACGTGGCCTTTGCTTGCAATGGGAAGGATACCAATGGAACACGTGTACG
TAGAGTAAGACTTGTGTGGGGTCTGTGGGGGGGGGTGCTGCAGCCATGCG
ACTTCGTTTGGCGCTTGGATGCCGCCTGACACGGCGCAGGGGTGGTGTAC
TTCAGTAAATCGAAGTAGTAGCCAAAAGGACTGCTGTTATCGCTGCTTGA
AAATTGTGCTGTAGCTACTTCGAAAAGCGTTTGCTTCTTGGGAAACAAAG
CGGGCGACCTCTGCTTTTTTTGCCGTCCCTCCGCGGTGCCTTTCACGGCC
ACATTCTCCCCTCCCGCCTTGCCCGTTTGCTTTCGCTACCCTGCGAGGAA
AGGGAGATCTCTATCGAGGCGTCTCCCTCTTGAAGCGCATATTTCCACTA
ACCCTTTTACCCCTGGGGTCCGTATAGTCATTTGCCATTAACCCTTTTAC
CCCTGGGGTCCGTACAGTCATAGGGTTTTTGTGTGCAAGTCCAATTCAGC
AGGGGTAAAAGGATTGAAGCCTTCAAGGGGTTGATCACTGTTTGCTCCGC
CCCCCTTCGTTCCATTTGTTCTCTTCGCCAGAAACCAGCTCAAGGTGTGG
CTCATCCGACGGCTGGTGGAAGCCAGCGGGCATGCCGACCTCATGACCAA
AGCCATCGCCGCTGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:61252..65767-

>mRNA_S-ischiensis_contig83.19945.1 ID=mRNA_S-ischiensis_contig83.19945.1|Name=mRNA_S-ischiensis_contig83.19945.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1548bp|location=Sequence derived from alignment at S-ischiensis_contig83:61252..65767- (Schizocladia ischiensis KU_0333)
GGCAGGGGGCGGGTGACGCAGACCTGGGAAGGGTACTGGTGCCTCAGGGC
AGGGGGCGGGTGACGCAGACCTGGGAAGGGTACTGGTGCCTCAGGATCTC
GCCCGTCTTCTTTGGGAGGAGTGCCCTCGCCAAACTGGAGACCAAGCCCG
CAGCACGGGCGCGCCGTTCAGCGGCGGCGGCGGTAGAGGCGGCGGCAGTG
GCGGCAGCAGCGAACGCAGCTGCGGATGCCGCTGTTGTGGCGGCATATGC
TGGAGGTGGAGAGGAGAAGCCTCCACAAGGATCTCGCCCGTCTTCTTTGG
GAGGAGTGCCCTCGCCAAACTGGAGACCAAGCCCGCAGCACGGGCGCGCC
GTTCAGCGGCGGCGGCGGTAGAGGCGGCGGCAGTGGCGGCAGCAGCGAAC
GCAGCTGCGGATGCCGCTGTTGTGGCGGCATATGCTGGAGGTGGAGAGGA
GAAGCCTCCACAAGAGCCCGCGGAGGGGGCAGAGGGGGGGCAGGCGCAGG
AGGGGGCAGACGCGGAAACTTCCGCCCCAGCACCAAAGCCTGCGGACTCT
CTGCAGCTGTCAGTTAGCCCCCTCATCACTGACCCCAACCAGCAGCTGGA
GGAGGCCGAGAAGAGGTTCCAGAGCCCGCGGAGGGGGCAGAGGGGGGGCA
GGCGCAGGAGGGGGCAGACGCGGAAACTTCCGCCCCAGCACCAAAGCCTG
CGGACTCTCTGCAGCTGTCAGTTAGCCCCCTCATCACTGACCCCAACCAG
CAGCTGGAGGAGGCCGAGAAGAGGTTCCAGGAAGCCATGTCGTCGGGGCT
GCCTTTAGGAGGTGGCATGACGCCAGCGCAGTACCGTGCAATGCTAGCGC
GTGACAGGGCCATCAAGAAGGAAGCCATGTCGTCGGGGCTGCCTTTAGGA
GGTGGCATGACGCCAGCGCAGTACCGTGCAATGCTAGCGCGTGACAGGGC
CATCAAGAAGGTCCTTCTCAGGCGCAAGCTCAAGGCCAAGCAGCGCCGTG
GGGAGATGCGCTACAAGGGATACCCCTTCACCAAGATACCCAGCGAGCAG
GTCCTTCTCAGGCGCAAGCTCAAGGCCAAGCAGCGCCGTGGGGAGATGCG
CTACAAGGGATACCCCTTCACCAAGATACCCAGCGAGCAGATGGCGGCGT
GGGTGGGGGAGATAAAGGACGAGGACAAGCAGAGGCGTCTGCAGCTGCGG
GAGGCAACGGCGAGGGCCAAGGCTAAGCGCCAGGAGGCGTCCGTGGTGCG
AGGACGCAGATGGCGGCGTGGGTGGGGGAGATAAAGGACGAGGACAAGCA
GAGGCGTCTGCAGCTGCGGGAGGCAACGGCGAGGGCCAAGGCTAAGCGCC
AGGAGGCGTCCGTGGTGCGAGGACGCAGAAACCAGCTCAAGGTGTGGCTC
ATCCGACGGCTGGTGGAAGCCAGCGGGCATGCCGACCTCATGACCAAAGC
CATCGCCGCTGCAAAACCAGCTCAAGGTGTGGCTCATCCGACGGCTGGTG
GAAGCCAGCGGGCATGCCGACCTCATGACCAAAGCCATCGCCGCTGCA
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