mRNA_S-ischiensis_contig82.19941.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19941.1
Unique NamemRNA_S-ischiensis_contig82.19941.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:701246..702260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1016
Cds size546
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.6374483-CDS-S-ischiensis_contig82:701245..7017911622817320.6374483-CDS-S-ischiensis_contig82:701245..701791Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 701246..701791 +
1695741024.4737675-CDS-S-ischiensis_contig82:701245..7017911695741024.4737675-CDS-S-ischiensis_contig82:701245..701791Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 701246..701791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.6491468-UTR-S-ischiensis_contig82:701791..7022601622817320.6491468-UTR-S-ischiensis_contig82:701791..702260Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 701792..702260 +
1695741024.485885-UTR-S-ischiensis_contig82:701791..7022601695741024.485885-UTR-S-ischiensis_contig82:701791..702260Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 701792..702260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19941.1prot_S-ischiensis_contig82.19941.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 701246..701791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19941.1

>prot_S-ischiensis_contig82.19941.1 ID=prot_S-ischiensis_contig82.19941.1|Name=mRNA_S-ischiensis_contig82.19941.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
YHTLARPERPGAPPPVVEPLQNTATISQADHPSNILNRANFFHITEKAFL
AALSRSRSKVSVGVCSSPSEAETASLVGRTPGARLFRGDGLYLYLLSFPA
LPLLMATSLASTIESQGKTYSTSIQQVGPCQSSARFVRTNGAKPTENQHH
PHLVRYATQSESASSSSSGSKHLTAVTKYCK*
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mRNA from alignment at S-ischiensis_contig82:701246..702260+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19941.1 ID=mRNA_S-ischiensis_contig82.19941.1|Name=mRNA_S-ischiensis_contig82.19941.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1015bp|location=Sequence derived from alignment at S-ischiensis_contig82:701246..702260+ (Schizocladia ischiensis KU_0333)
TACCATACACTCGCGCGGCCTGAACGGCCAGGCGCTCCGCCCCCGGTCGT
CGAGCCCCTCCAAAATACAGCCACTATCTCACAGGCTGACCATCCTTCAA
ACATACTCAATCGTGCAAATTTCTTCCACATTACAGAAAAGGCCTTCCTC
GCCGCACTGTCACGCAGCCGCTCCAAAGTTTCAGTGGGGGTTTGCTCAAG
CCCCTCCGAAGCGGAAACTGCTTCCTTAGTGGGACGTACACCTGGCGCTC
GCCTGTTTCGAGGCGACGGCCTGTACCTGTACCTACTTTCTTTCCCAGCA
CTGCCTTTACTGATGGCAACAAGTCTTGCCTCAACAATCGAGAGTCAGGG
GAAAACATATTCCACGTCAATACAGCAAGTTGGGCCTTGCCAATCTAGCG
CCAGGTTCGTGCGCACGAATGGGGCTAAGCCAACTGAAAATCAGCACCAT
CCTCATCTTGTAAGGTATGCAACACAGTCAGAGTCTGCGTCATCTTCGTC
GTCAGGCTCCAAACATCTTACTGCCGTTACTAAGTACTGCAAGTAACTGT
AGCAACACCTCTTCTATCGACGTCCGGGCCCTGCAACCATTTCTGGGGCA
AGATACGCGCCAAAATTCGTCGCGTGTGCCTCGCGGTCCTCCTCCTCCCC
CAAATCCAACTGCCGGGTTCGTTGCCGTAACTAAAACATACCGTGGCCCC
GGATTTAGTGTGCTTCCTGGTATCCAAATCAAGTGCATCTAAGGTGTCCT
GCCCGACTAGTATCGGCAGACGTGGCCGCAGCACAACCACAAAATCATGC
TCGACAAATGCCGTGCCCAAGCGCACTTGCAACGTACTTGTTCACGTCGC
TCGAACTGCGGCCGAGGATTTAACAAACCCTCCTAATGTAGTAGCCGGGG
TAGACTCGATCGCGTGCATATTTAACGCACCGGATTTCAGCCCCCGATTT
ACTGTTGTTTCAGCCACAACAGATACATATGCCCCAGAGTCAAGCATCCC
ACAGCCCACCACCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:701246..702260+

>mRNA_S-ischiensis_contig82.19941.1 ID=mRNA_S-ischiensis_contig82.19941.1|Name=mRNA_S-ischiensis_contig82.19941.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1092bp|location=Sequence derived from alignment at S-ischiensis_contig82:701246..702260+ (Schizocladia ischiensis KU_0333)
TACCATACACTCGCGCGGCCTGAACGGCCAGGCGCTCCGCCCCCGGTCGT
CGAGCCCCTCCAAAATACAGCCACTATCTCACAGGCTGACCATCCTTCAA
ACATACTCAATCGTGCAAATTTCTTCCACATTACAGAAAAGGCCTTCCTC
GCCGCACTGTCACGCAGCCGCTCCAAAGTTTCAGTGGGGGTTTGCTCAAG
CCCCTCCGAAGCGGAAACTGCTTCCTTAGTGGGACGTACACCTGGCGCTC
GCCTGTTTCGAGGCGACGGCCTGTACCTGTACCTACTTTCTTTCCCAGCA
CTGCCTTTACTGATGGCAACAAGTCTTGCCTCAACAATCGAGAGTCAGGG
GAAAACATATTCCACGTCAATACAGCAAGTTGGGCCTTGCCAATCTAGCG
CCAGGTTCGTGCGCACGAATGGGGCTAAGCCAACTGAAAATCAGCACCAT
CCTCATCTTGTAAGGTATGCAACACAGTCAGAGTCTGCGTCATCTTCGTC
GTCAGGCTCCAAACATCTTACTGCCGTTACTAAGTACTGCAAGTAATACC
ATACACTCGCGCGGCCTGAACGGCCAGGCGCTCCGCCCCCGGTCGTCGAG
CCCCTCCAAAATACAGCCACTATCTCACAGGCTGACCATCCTTCAAACAT
ACTCAATCGTGCAAATTTCTTCCACATTACAGAAAAGGCCTTCCTCGCCG
CACTGTCACGCAGCCGCTCCAAAGTTTCAGTGGGGGTTTGCTCAAGCCCC
TCCGAAGCGGAAACTGCTTCCTTAGTGGGACGTACACCTGGCGCTCGCCT
GTTTCGAGGCGACGGCCTGTACCTGTACCTACTTTCTTTCCCAGCACTGC
CTTTACTGATGGCAACAAGTCTTGCCTCAACAATCGAGAGTCAGGGGAAA
ACATATTCCACGTCAATACAGCAAGTTGGGCCTTGCCAATCTAGCGCCAG
GTTCGTGCGCACGAATGGGGCTAAGCCAACTGAAAATCAGCACCATCCTC
ATCTTGTAAGGTATGCAACACAGTCAGAGTCTGCGTCATCTTCGTCGTCA
GGCTCCAAACATCTTACTGCCGTTACTAAGTACTGCAAGTAA
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