mRNA_S-ischiensis_contig82.19914.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19914.1
Unique NamemRNA_S-ischiensis_contig82.19914.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:244522..245149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size628
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19914.1prot_S-ischiensis_contig82.19914.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 244554..244916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.4918752-UTR-S-ischiensis_contig82:244521..2445531622817320.4918752-UTR-S-ischiensis_contig82:244521..244553Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 244522..244553 +
1695741024.3870692-UTR-S-ischiensis_contig82:244521..2445531695741024.3870692-UTR-S-ischiensis_contig82:244521..244553Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 244522..244553 +
1622817320.5136356-UTR-S-ischiensis_contig82:244916..2451491622817320.5136356-UTR-S-ischiensis_contig82:244916..245149Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 244917..245149 +
1695741024.4138484-UTR-S-ischiensis_contig82:244916..2451491695741024.4138484-UTR-S-ischiensis_contig82:244916..245149Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 244917..245149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.502709-CDS-S-ischiensis_contig82:244553..2449161622817320.502709-CDS-S-ischiensis_contig82:244553..244916Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 244554..244916 +
1695741024.400875-CDS-S-ischiensis_contig82:244553..2449161695741024.400875-CDS-S-ischiensis_contig82:244553..244916Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 244554..244916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19914.1

>prot_S-ischiensis_contig82.19914.1 ID=prot_S-ischiensis_contig82.19914.1|Name=mRNA_S-ischiensis_contig82.19914.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp
MGIFAGFWRVRGGVAQRCRVRQAPPTANNVCFLCIRARNTPSQSFAPKIH
LGAKNMAMDCAGLLEGHLGDVTFRPKTRDRRHPSMDFGSRCVADLVVEVW
AELHCVSTKIAVSVARARRK*
back to top

mRNA from alignment at S-ischiensis_contig82:244522..245149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19914.1 ID=mRNA_S-ischiensis_contig82.19914.1|Name=mRNA_S-ischiensis_contig82.19914.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=628bp|location=Sequence derived from alignment at S-ischiensis_contig82:244522..245149+ (Schizocladia ischiensis KU_0333)
TTTTGTTCCCGCGGCGAACAGAGCCGCCGAAAATGGGCATTTTTGCGGGA
TTTTGGAGGGTTAGAGGAGGTGTTGCACAGCGATGCCGAGTCCGCCAAGC
ACCACCAACCGCAAACAATGTTTGTTTCCTGTGCATAAGGGCGCGTAACA
CACCCTCCCAAAGCTTCGCGCCCAAAATCCACCTCGGGGCCAAGAACATG
GCGATGGACTGCGCGGGCCTCCTGGAGGGGCATTTGGGTGACGTCACGTT
TCGGCCCAAAACTCGCGACCGGCGACACCCGAGCATGGATTTCGGCTCGC
GCTGTGTAGCAGACCTCGTAGTTGAGGTCTGGGCGGAGTTGCACTGCGTC
TCAACGAAAATTGCGGTTTCTGTGGCAAGAGCCCGCCGAAAGTAGCGAGC
GCCCGGGCCAAGTGGGCGCTCAAACTGGAGTGGGAGTTGGAGCGCAAAAC
TTGGTCGTTTGATGTAAATGCTGCCAAGGATTCCGAATCAAAAACCCGTT
TGTTCATCCGAGCCCTCCTTCAAAGCTATGACAAACTTTAACAATACTTT
CCGGCCAGAAGAGTACTCACATTGTGCTTGCCGTAGTCCCGAGACCGTTC
ACCGTGCGCCTCTGCCGAGATGGAGCCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig82:244522..245149+

>mRNA_S-ischiensis_contig82.19914.1 ID=mRNA_S-ischiensis_contig82.19914.1|Name=mRNA_S-ischiensis_contig82.19914.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig82:244522..245149+ (Schizocladia ischiensis KU_0333)
ATGGGCATTTTTGCGGGATTTTGGAGGGTTAGAGGAGGTGTTGCACAGCG
ATGCCGAGTCCGCCAAGCACCACCAACCGCAAACAATGTTTGTTTCCTGT
GCATAAGGGCGCGTAACACACCCTCCCAAAGCTTCGCGCCCAAAATCCAC
CTCGGGGCCAAGAACATGGCGATGGACTGCGCGGGCCTCCTGGAGGGGCA
TTTGGGTGACGTCACGTTTCGGCCCAAAACTCGCGACCGGCGACACCCGA
GCATGGATTTCGGCTCGCGCTGTGTAGCAGACCTCGTAGTTGAGGTCTGG
GCGGAGTTGCACTGCGTCTCAACGAAAATTGCGGTTTCTGTGGCAAGAGC
CCGCCGAAAGTAGATGGGCATTTTTGCGGGATTTTGGAGGGTTAGAGGAG
GTGTTGCACAGCGATGCCGAGTCCGCCAAGCACCACCAACCGCAAACAAT
GTTTGTTTCCTGTGCATAAGGGCGCGTAACACACCCTCCCAAAGCTTCGC
GCCCAAAATCCACCTCGGGGCCAAGAACATGGCGATGGACTGCGCGGGCC
TCCTGGAGGGGCATTTGGGTGACGTCACGTTTCGGCCCAAAACTCGCGAC
CGGCGACACCCGAGCATGGATTTCGGCTCGCGCTGTGTAGCAGACCTCGT
AGTTGAGGTCTGGGCGGAGTTGCACTGCGTCTCAACGAAAATTGCGGTTT
CTGTGGCAAGAGCCCGCCGAAAGTAG
back to top