mRNA_S-ischiensis_contig82.19907.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19907.1
Unique NamemRNA_S-ischiensis_contig82.19907.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:197224..199342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size191
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817319.7277267-CDS-S-ischiensis_contig82:197223..1972841622817319.7277267-CDS-S-ischiensis_contig82:197223..197284Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 197224..197284 -
1695741023.9596267-CDS-S-ischiensis_contig82:197223..1972841695741023.9596267-CDS-S-ischiensis_contig82:197223..197284Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 197224..197284 -
1622817319.7426672-CDS-S-ischiensis_contig82:199214..1993421622817319.7426672-CDS-S-ischiensis_contig82:199214..199342Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 199215..199342 -
1695741023.969283-CDS-S-ischiensis_contig82:199214..1993421695741023.969283-CDS-S-ischiensis_contig82:199214..199342Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 199215..199342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19907.1prot_S-ischiensis_contig82.19907.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 197224..199342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19907.1

>prot_S-ischiensis_contig82.19907.1 ID=prot_S-ischiensis_contig82.19907.1|Name=mRNA_S-ischiensis_contig82.19907.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=63bp
LRSEEGPSALATRVRGVCTPSPRTTTLTNRPVSPCGGHRDYNRLRLEYEM
FLIFSSEPEQQHP
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mRNA from alignment at S-ischiensis_contig82:197224..199342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19907.1 ID=mRNA_S-ischiensis_contig82.19907.1|Name=mRNA_S-ischiensis_contig82.19907.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2119bp|location=Sequence derived from alignment at S-ischiensis_contig82:197224..199342- (Schizocladia ischiensis KU_0333)
CTGCGAAGCGAGGAAGGTCCGTCAGCTTTGGCAACACGAGTACGTGGAGT
GTGCACACCGTCGCCTCGAACAACGACCTTGACGAACAGGCCCGTCAGTC
CATGTGGTGGGCACCGTGACTACAACAGGTGTGAAAACAGTGCGTACCAG
AAGGTTGTTACAGTTCGCTTCTGAGTACTTGGTTTTGCACATCATGGTTC
GCGTTCTTGCACTCTGCTCGCTCGTTTCGTCTCTTGATTCATCATACAAG
TGTTGAATTTCTTTGCTACACAGCTGGAGAGCTAGCTCTTGTCTGACGGA
CCCGATGCACAAATCTTGCCTTCTGACCCATGCGGCCCATTCCGCGCTGC
AATGGCCTTGATGGAAATAGTAAACCTTGGTCCTGCAGCTCGCTTGTTCA
TGTGCCTACTACAGTACGCTATATGTACTCACGTGGTGCTTGCCGTAGTC
CCGAGACCATTGACCCCGCGCCTCGTGCGAGACGGACGTTCCGGTACAAA
AGTACTCATAGTGCTTCGAGAAGTACCGTGACGTCCAAATGGGACTCGAG
AAAAGATGAGTGTTCCGCACTGGGGACAAGGCGGGTGGTCACTGGCTAGG
TGGGTTAGGTATACGGCAAGCACACCGTGCACATGTTCTTCATAACTACT
AGTAGTAGGTATATGCACGTGAAGCTTCGTACTACAGTTCCTGTCGTACT
CCGAGTACTTCGAAGGAGATGTTGAATGATGTCATTGCCGGCTCGCCCAC
GCTGGTCACTCTTGCTAGACATGTGTGCTACTTTGCAGTATTTCCAACCC
GGGGTATTTCGGGGAGCACTCCGAAGTTCCCGTTTATCGAAAGGTCCGTC
TGTGGCCTTGCCCACTTGCTGACTTTGTCTGCATTGAATGCGTGGGAATG
TGCGCCGTTGAGGGGATTGCTATGCAAGTACTGCAAAGCACTTGAAGTGT
GTGATGACCTTGAACAGAACTTTCAGTACAGCCCAAAGTATGGTAGTGCT
TCGAAGCATGACAAGCGCTTTGAACCAAGTATAGTGTACTTTGCCGTACA
AGGTTGCTTGTACTTCCCGGAAGTACCTACAGCAGTGAGGCTTCAGACGT
TGTCGGTAATCAACTGAAGTAATCCAAACCCTGACATCTCGTGAACGGGC
CACAACGCCGTAATGATGGGGTAGGTTACAATTTTTGTGCCCGTGTGCGA
GCATGTCAATACCGAAGCACTTCGAGAATACTACTGTACTCTAACACTCG
TGGCCCAAGGGTGGGACCTTGCCGGTCCTTGCGATCCTATATTTGGCTAC
AGGGAGCACATTTCAGATTTTGACCTTATCTACTGTAATGTGTTCCCTGT
TACCAAATGTAGGATCGCAAGAAAGCGTGGCCACGTGTGAAGGTTAGTGT
ACGACAGTCAAAGTGAGTACAGTGTGATAATAGACAACTGGCCTACTATT
TGAACTATCACAGTAGTACTACGGATCCATGCCTGTATTTGTTGCTACCA
TACTTGTACTGTATGGCAGCGCGCACCTTAGGCTCTTGGGCCTAACGGAA
CCAGCCTCAAGGCTTGGGGCGGCAACTTTCTCAATGTCTTGGCGGCCTTC
AGCACCTCGATCGCAGCTATGGCGCGGCCACCAAACCCACTGTTTAGGAT
AGGTAGGAGAACTGTTAATATGTACTTCGAAGTACAGCAGTACTGTACCT
GCTCGTGCAGGAGCACGTTTGTGCACGAACCACCCCAAGTCCCTCGCTTG
AAGCACCAATCAAGTCTCACTCAGCTTGCCAGGCGTTCTCAGCTATTGCA
CATACAAATGCAGAGTTGCTGCTACTAGCTACTCGTACAGTATCTAAGCG
CCCTGCCTTCTTGCAGCAGCAATCCCAGCCTCTCATGACAGAAAGGAGGT
AGTCAATCTCCTCGACCACGGCGCATGCCGTGCTCCCTCCATCCCACAGC
GTCTTCCCTACACCATGGATGCGGCCGGCAATTCATACTTGAGTACAACC
CACGTGGCCCCTCCGCCCCCCGCGACACGATTGCCGCCGCCACCGTCACT
CGCGGCAGGCTCCGCCTGGAGTACGAAATGTTCCTCATCTTCTCTTCAGA
GCCGGAGCAGCAGCACCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:197224..199342-

>mRNA_S-ischiensis_contig82.19907.1 ID=mRNA_S-ischiensis_contig82.19907.1|Name=mRNA_S-ischiensis_contig82.19907.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=378bp|location=Sequence derived from alignment at S-ischiensis_contig82:197224..199342- (Schizocladia ischiensis KU_0333)
CTGCGAAGCGAGGAAGGTCCGTCAGCTTTGGCAACACGAGTACGTGGAGT
GTGCACACCGTCGCCTCGAACAACGACCTTGACGAACAGGCCCGTCAGTC
CATGTGGTGGGCACCGTGACTACAACAGCTGCGAAGCGAGGAAGGTCCGT
CAGCTTTGGCAACACGAGTACGTGGAGTGTGCACACCGTCGCCTCGAACA
ACGACCTTGACGAACAGGCCCGTCAGTCCATGTGGTGGGCACCGTGACTA
CAACAGGCTCCGCCTGGAGTACGAAATGTTCCTCATCTTCTCTTCAGAGC
CGGAGCAGCAGCACCCAGCTCCGCCTGGAGTACGAAATGTTCCTCATCTT
CTCTTCAGAGCCGGAGCAGCAGCACCCA
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