mRNA_S-ischiensis_contig82.19906.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19906.1
Unique NamemRNA_S-ischiensis_contig82.19906.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:95302..95998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size697
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.375018-UTR-S-ischiensis_contig82:95301..956291622817320.375018-UTR-S-ischiensis_contig82:95301..95629Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 95302..95629 +
1695741024.3398008-UTR-S-ischiensis_contig82:95301..956291695741024.3398008-UTR-S-ischiensis_contig82:95301..95629Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 95302..95629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.3879888-CDS-S-ischiensis_contig82:95629..959981622817320.3879888-CDS-S-ischiensis_contig82:95629..95998Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 95630..95998 +
1695741024.3506532-CDS-S-ischiensis_contig82:95629..959981695741024.3506532-CDS-S-ischiensis_contig82:95629..95998Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 95630..95998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19906.1prot_S-ischiensis_contig82.19906.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 95630..95998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19906.1

>prot_S-ischiensis_contig82.19906.1 ID=prot_S-ischiensis_contig82.19906.1|Name=mRNA_S-ischiensis_contig82.19906.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=123bp
MHAGGKIISEQSLASLLSSALRCADEFLLRHRFVPCVVAHETASVSLPPS
PCFSFPLFAPRVKATEGRASMLGSRALVIRDTPLPTRPLCLLRKVSQKEG
SPDCDFLNGLPKVPVGPLQILRN
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mRNA from alignment at S-ischiensis_contig82:95302..95998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19906.1 ID=mRNA_S-ischiensis_contig82.19906.1|Name=mRNA_S-ischiensis_contig82.19906.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=697bp|location=Sequence derived from alignment at S-ischiensis_contig82:95302..95998+ (Schizocladia ischiensis KU_0333)
CAGAATGGGTGAAACACCAGGCAAAACCGGCCCAATGAACCGGGACGGCC
CTACGTTTTACATGCCCGTGTGCTCGCAGGAAGCCGGTGACGGTATTGAT
CAGCAGGCTAAGAAGAGGTATTTGATGACCAGTCTAACAAGGCAATCTCC
CGTCTTGCCCCCTGGGGCGGCATACGTTTTTGACGGGCTTCTTTGTGATT
AACCACGCGGGCTGACACGCACAGTGGCCTCCACTGTGTAGGATATTTGT
CATCGTTTCTGGTGTTGGCCACACCATTGCGCGGTTAGCATAGGCTCTGC
GCTTTCGTGGTCAGTCTGGTCACTCCACATGCACGCAGGCGGGAAAATAA
TTTCGGAACAGTCTCTTGCGTCCTTACTTTCAAGCGCTCTCAGGTGCGCC
GATGAGTTTCTTCTGCGTCATCGATTTGTGCCCTGTGTCGTGGCACACGA
GACCGCCTCTGTATCTCTTCCCCCTTCCCCTTGTTTTTCTTTTCCATTAT
TTGCCCCGCGAGTGAAGGCGACTGAAGGAAGGGCTTCCATGTTGGGGTCC
CGAGCTCTTGTAATTAGAGACACCCCCCTTCCCACTCGCCCGTTGTGTCT
TCTCAGAAAGGTATCCCAAAAAGAAGGCTCGCCAGATTGCGACTTCTTGA
ATGGTCTGCCCAAGGTTCCGGTTGGTCCGTTGCAGATTTTGAGAAAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:95302..95998+

>mRNA_S-ischiensis_contig82.19906.1 ID=mRNA_S-ischiensis_contig82.19906.1|Name=mRNA_S-ischiensis_contig82.19906.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig82:95302..95998+ (Schizocladia ischiensis KU_0333)
ATGCACGCAGGCGGGAAAATAATTTCGGAACAGTCTCTTGCGTCCTTACT
TTCAAGCGCTCTCAGGTGCGCCGATGAGTTTCTTCTGCGTCATCGATTTG
TGCCCTGTGTCGTGGCACACGAGACCGCCTCTGTATCTCTTCCCCCTTCC
CCTTGTTTTTCTTTTCCATTATTTGCCCCGCGAGTGAAGGCGACTGAAGG
AAGGGCTTCCATGTTGGGGTCCCGAGCTCTTGTAATTAGAGACACCCCCC
TTCCCACTCGCCCGTTGTGTCTTCTCAGAAAGGTATCCCAAAAAGAAGGC
TCGCCAGATTGCGACTTCTTGAATGGTCTGCCCAAGGTTCCGGTTGGTCC
GTTGCAGATTTTGAGAAATATGCACGCAGGCGGGAAAATAATTTCGGAAC
AGTCTCTTGCGTCCTTACTTTCAAGCGCTCTCAGGTGCGCCGATGAGTTT
CTTCTGCGTCATCGATTTGTGCCCTGTGTCGTGGCACACGAGACCGCCTC
TGTATCTCTTCCCCCTTCCCCTTGTTTTTCTTTTCCATTATTTGCCCCGC
GAGTGAAGGCGACTGAAGGAAGGGCTTCCATGTTGGGGTCCCGAGCTCTT
GTAATTAGAGACACCCCCCTTCCCACTCGCCCGTTGTGTCTTCTCAGAAA
GGTATCCCAAAAAGAAGGCTCGCCAGATTGCGACTTCTTGAATGGTCTGC
CCAAGGTTCCGGTTGGTCCGTTGCAGATTTTGAGAAAT
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