mRNA_S-ischiensis_contig82.19903.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19903.1
Unique NamemRNA_S-ischiensis_contig82.19903.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:17588..19086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size786
Cds size738
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19903.1prot_S-ischiensis_contig82.19903.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 17588..19038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817319.6720364-CDS-S-ischiensis_contig82:17587..181981622817319.6720364-CDS-S-ischiensis_contig82:17587..18198Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 17588..18198 +
1695741023.9302125-CDS-S-ischiensis_contig82:17587..181981695741023.9302125-CDS-S-ischiensis_contig82:17587..18198Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 17588..18198 +
1622817319.683078-CDS-S-ischiensis_contig82:18911..190381622817319.683078-CDS-S-ischiensis_contig82:18911..19038Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 18912..19038 +
1695741023.9399736-CDS-S-ischiensis_contig82:18911..190381695741023.9399736-CDS-S-ischiensis_contig82:18911..19038Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 18912..19038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817319.6938636-UTR-S-ischiensis_contig82:19038..190861622817319.6938636-UTR-S-ischiensis_contig82:19038..19086Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 19039..19086 +
1695741023.949692-UTR-S-ischiensis_contig82:19038..190861695741023.949692-UTR-S-ischiensis_contig82:19038..19086Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 19039..19086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19903.1

>prot_S-ischiensis_contig82.19903.1 ID=prot_S-ischiensis_contig82.19903.1|Name=mRNA_S-ischiensis_contig82.19903.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=246bp
PGLRSRRKKGHLRAQPPRHRSVGPERCCLPHAGQLWHLSSSPHPGRRRRK
RRKWRKRRDTIPEPGRPPAPTPPRAIAGYARGTGHSPPPQRLPWCGHPAE
SCSFPGPAQSSGRRGLGAWPPLPLRRRRRRRRTTTTIRRNLQERTFRRSR
TPRTPARAPPCGEAARRSPENRSNNATAYTHNRHRSGGQADRKQQHPQLE
QKGRPALLKMKSTATERTCLCCLAVEYSSKEHQRRPAARGDGKHG*
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mRNA from alignment at S-ischiensis_contig82:17588..19086+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19903.1 ID=mRNA_S-ischiensis_contig82.19903.1|Name=mRNA_S-ischiensis_contig82.19903.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1499bp|location=Sequence derived from alignment at S-ischiensis_contig82:17588..19086+ (Schizocladia ischiensis KU_0333)
CCAGGACTGCGCAGCCGGAGGAAGAAAGGACACCTTCGGGCACAGCCACC
ACGGCACCGGAGCGTAGGGCCAGAGAGGTGTTGTTTGCCGCACGCTGGAC
AGCTGTGGCATCTGAGCAGTTCCCCTCACCCAGGGCGGAGGAGGAGGAAG
AGGAGGAAGTGGAGGAAGAGGAGGGATACAATTCCGGAACCAGGTAGGCC
CCCGGCCCCAACGCCACCTCGAGCAATAGCGGGCTATGCCAGAGGCACAG
GGCACTCCCCCCCACCCCAGCGGCTGCCATGGTGCGGTCATCCAGCAGAA
AGTTGCAGCTTCCCGGGCCCGGCCCAGAGTTCGGGTCGGAGGGGTCTAGG
AGCATGGCCGCCCCTCCCACTTCGGAGGAGGAGGAGGAGGAGGAGGACGA
CGACGACGATAAGGCGAAACCTGCAAGAACGGACATTCCGTCGTTCGAGA
ACGCCGCGGACGCCAGCAAGGGCACCTCCGTGCGGGGAAGCAGCCCGACG
GAGCCCTGAGAACAGAAGCAACAATGCCACAGCGTATACCCACAACAGGC
ACAGAAGCGGCGGACAGGCAGACAGGAAGCAGCAGCACCCCCAGTTGGAG
CAAAAGGGCAGGTGGGCATGTTGCCGTCACACAAGCGAACTGCAGGAACA
GCGGGCATGGGGTGTGAAGGGCTGGTGTAACTTGTATGGGTGACAAACCG
AACGCAGATGATTTGGTTGCTCCTGTCATTCCCACGTCTCCGTAATCTGA
AGCGCACGCATACAGTGCAGTACAGTAAGTGTGTACTTATAACCAAGTAC
TGTAGTACTATTGCAATGCACTCTACAGTGCAAGGTTTTGTGTTCCTTGC
AAGTGCGTGGACCCTACCGAGTGAAAATCGAATCATGCTTGGAATCCTGT
AGGAATACACAACCACATGGACCAGCCTGATGATAAGGGTGTCGAATGGC
GTTTAGGGCTTGCCGATACAGCGGCCAAGGACTATGCTGTTGAGGATGCA
AGTGCAGGACCAGATCACGGTGCAACGGCGATGCGTTGCTTCTCAAGCTC
CCCACTCACCGTGGAGTACGCAAAGGTTTCATTCCAGGCACCAGTTGCCG
GTCCACCGCGCACGTATCCCCCCGCAAGGATCACTTCATCCCCTGCACCC
AGGGTCTCAGCTTCGATAGAGGAGGATACATTGTACCAAACCTCCACCAC
GCTGCTGTTGACCCACGTGCACCCGTAGCCGTCACCAGCACTGGTGAGAT
TCTGCAGCGTTGTGGAGGCGAGGAGAAGTGTGACGTTGCAGGCTCCACTG
ACCCCACCCCCATCAACACTGCAGGCCGGCTCTTCTGAAGATGAAGTCGA
CAGCGACTGAGAGGACGTGCTTGTGCTGCTTGGCGGTGGAGTACAGTAGC
AAGGAGCATCAAAGGAGACCTGCAGCAAGGGGAGATGGCAAGCATGGGTG
AGGGATGCAAGTATGCTGTCGTGGCGTGGACTCCCACATTCTTCTCAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:17588..19086+

>mRNA_S-ischiensis_contig82.19903.1 ID=mRNA_S-ischiensis_contig82.19903.1|Name=mRNA_S-ischiensis_contig82.19903.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1476bp|location=Sequence derived from alignment at S-ischiensis_contig82:17588..19086+ (Schizocladia ischiensis KU_0333)
CCAGGACTGCGCAGCCGGAGGAAGAAAGGACACCTTCGGGCACAGCCACC
ACGGCACCGGAGCGTAGGGCCAGAGAGGTGTTGTTTGCCGCACGCTGGAC
AGCTGTGGCATCTGAGCAGTTCCCCTCACCCAGGGCGGAGGAGGAGGAAG
AGGAGGAAGTGGAGGAAGAGGAGGGATACAATTCCGGAACCAGGTAGGCC
CCCGGCCCCAACGCCACCTCGAGCAATAGCGGGCTATGCCAGAGGCACAG
GGCACTCCCCCCCACCCCAGCGGCTGCCATGGTGCGGTCATCCAGCAGAA
AGTTGCAGCTTCCCGGGCCCGGCCCAGAGTTCGGGTCGGAGGGGTCTAGG
AGCATGGCCGCCCCTCCCACTTCGGAGGAGGAGGAGGAGGAGGAGGACGA
CGACGACGATAAGGCGAAACCTGCAAGAACGGACATTCCGTCGTTCGAGA
ACGCCGCGGACGCCAGCAAGGGCACCTCCGTGCGGGGAAGCAGCCCGACG
GAGCCCTGAGAACAGAAGCAACAATGCCACAGCGTATACCCACAACAGGC
ACAGAAGCGGCGGACAGGCAGACAGGAAGCAGCAGCACCCCCAGTTGGAG
CAAAAGGGCAGCCAGGACTGCGCAGCCGGAGGAAGAAAGGACACCTTCGG
GCACAGCCACCACGGCACCGGAGCGTAGGGCCAGAGAGGTGTTGTTTGCC
GCACGCTGGACAGCTGTGGCATCTGAGCAGTTCCCCTCACCCAGGGCGGA
GGAGGAGGAAGAGGAGGAAGTGGAGGAAGAGGAGGGATACAATTCCGGAA
CCAGGTAGGCCCCCGGCCCCAACGCCACCTCGAGCAATAGCGGGCTATGC
CAGAGGCACAGGGCACTCCCCCCCACCCCAGCGGCTGCCATGGTGCGGTC
ATCCAGCAGAAAGTTGCAGCTTCCCGGGCCCGGCCCAGAGTTCGGGTCGG
AGGGGTCTAGGAGCATGGCCGCCCCTCCCACTTCGGAGGAGGAGGAGGAG
GAGGAGGACGACGACGACGATAAGGCGAAACCTGCAAGAACGGACATTCC
GTCGTTCGAGAACGCCGCGGACGCCAGCAAGGGCACCTCCGTGCGGGGAA
GCAGCCCGACGGAGCCCTGAGAACAGAAGCAACAATGCCACAGCGTATAC
CCACAACAGGCACAGAAGCGGCGGACAGGCAGACAGGAAGCAGCAGCACC
CCCAGTTGGAGCAAAAGGGCAGGCCGGCTCTTCTGAAGATGAAGTCGACA
GCGACTGAGAGGACGTGCTTGTGCTGCTTGGCGGTGGAGTACAGTAGCAA
GGAGCATCAAAGGAGACCTGCAGCAAGGGGAGATGGCAAGCATGGGTGAG
CCGGCTCTTCTGAAGATGAAGTCGACAGCGACTGAGAGGACGTGCTTGTG
CTGCTTGGCGGTGGAGTACAGTAGCAAGGAGCATCAAAGGAGACCTGCAG
CAAGGGGAGATGGCAAGCATGGGTGA
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