mRNA_S-ischiensis_contig81.19893.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig81.19893.1
Unique NamemRNA_S-ischiensis_contig81.19893.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig81.19893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig81contigS-ischiensis_contig81:469439..472340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1298
Cds size903
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig81.19893.1prot_S-ischiensis_contig81.19893.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig81 469439..470341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817311.1199355-CDS-S-ischiensis_contig81:469438..4703411622817311.1199355-CDS-S-ischiensis_contig81:469438..470341Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 469439..470341 -
1695741016.7501163-CDS-S-ischiensis_contig81:469438..4703411695741016.7501163-CDS-S-ischiensis_contig81:469438..470341Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 469439..470341 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817311.1321607-UTR-S-ischiensis_contig81:470341..4705881622817311.1321607-UTR-S-ischiensis_contig81:470341..470588Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 470342..470588 -
1695741016.7599795-UTR-S-ischiensis_contig81:470341..4705881695741016.7599795-UTR-S-ischiensis_contig81:470341..470588Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 470342..470588 -
1622817311.1439333-UTR-S-ischiensis_contig81:472194..4723401622817311.1439333-UTR-S-ischiensis_contig81:472194..472340Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 472195..472340 -
1695741016.7703629-UTR-S-ischiensis_contig81:472194..4723401695741016.7703629-UTR-S-ischiensis_contig81:472194..472340Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 472195..472340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig81.19893.1

>prot_S-ischiensis_contig81.19893.1 ID=prot_S-ischiensis_contig81.19893.1|Name=mRNA_S-ischiensis_contig81.19893.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=301bp
MVRAGADTEVTTRGSTALHIAARKGCKLAVKTLLGAGAAVHAKAVDKEET
TALHLACHRGHSGVVRGLLDSGANVHVKVACGDDKDVTPLHMAAARGHAE
VVGQLLDAGAIVDARAGLGRTALHTAASEGHTAVVRQLAGAGANVHAMDQ
EHHSTPLHLAAYAGHVAVVQRLLDLGAEKDARGRTGFTPLHSAAFRGQSE
SVKAFLEAGADNRARSDNGNSPLHLACWHCQQACVEVLLRFGADELGMGN
EGRTPAQAIGHRVGNDDRDPATEARVIAMLQKAPWDRAWHRRGWLVMMQA
Q
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mRNA from alignment at S-ischiensis_contig81:469439..472340-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig81.19893.1 ID=mRNA_S-ischiensis_contig81.19893.1|Name=mRNA_S-ischiensis_contig81.19893.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2902bp|location=Sequence derived from alignment at S-ischiensis_contig81:469439..472340- (Schizocladia ischiensis KU_0333)
GCGGCTCCTACTACTGTGGTGGACCACACAACAACATGAGCAAGGCGGGA
GCTTGGGGAGCTTGTCTAGGAGTCATTTCCTTCAGTGGACAGCTGCTTGT
TGCTATGTCGCATGGATCTTCTGGAGCTAGCGCCGCATCGAGTCCGGTGG
GTCACCTTGGGTCACCCACGCTTGCGATGGGGTAGCTTTTTTTTCTGGGC
TTGAGCGACTGCAGTAGAGCTTTGCGGCTCCGAGCTTGTGCAAACCGGCA
GGGTCTGCTAAACGACACCCAGCACTCGGTCTCACCTCTAGTTTGTCCTT
GGATTTACGCACTGAAAGGTGCCCCATACCGCGCTTCCATACTGTGCCAC
GAGCGTGTGTGCGAGTGGGGGTGGCGTTCACAGCGATGCATTCATGATGG
CTGCACCACCGACCATAAATCTGCCACACATTATGTACGGCGGCGTGTGG
GGATGGCAGTACCTAAGGGTGTGAAATGTTTGTGGTTTCGGCTGTGTTTC
GCCTTCCTGTTTGGCGTTTATGCGGACGAGTTTTTGACGGCGAGCGACGT
TCATTTTGGTGCAGGGTGTTGGAGTCCGCACCACTCGTTGTCGTTTTTGG
GTAACCCTCATAGCAATCGACATATTTTTGTAGGAACGAAAAGGCTCGTA
GCTCGAGCTTGTGTTGTGTTGCCAAGGCGTCCGAGCCATGCAAGCCCGCA
GTTTTTCCCCGATGTATGTGCAATGTGTCTCTCTCGTTCCTGCTCAAATA
TTCACCAGGGTGCGACAGGTAGTGGAACTACCATCTCGATGGGCACAGCC
ATTGAAACGCGAATACATTTTCCTTGATTGTATGTAGCGCTCGTTCACCA
GCTAGTTCACCCCGCCTCTAAACATTACGAAAATGGAAGTATGGGAGGGG
CACCCCTCCGCACCTGCAGTAGGCTGTCAATTTACCGGTAACAACACTAC
CGCGGTTGAAACACCAACTTCTAAACAGCCACCTCAGGCGAGACTACTCG
CGCCACACTGCGCTTGAAACGATGTTTCAACTGTTGAAAGGTGCCGCTAT
TTGATATCTCTCTGTTGGAGGCGGGCGAGTCCCGAACGGTGCACCACAGC
GCGAGCAGTCGGTGTCAAGGCCGCCAAAAATGGTAACTACAGACAGACAT
CCGAGCCGAAATGCACCCTGCCAGAGAAACCCCGCACGCGTTCCTTGCGG
CCCCTATGCGAAAGAAGTTGCACTCCGCCTAACCGGCATTTGCCCCTTCC
ATAAACGAGACCCATTCCCTTTTTCTGTTTAGGTATGAAACCTGGCTACG
TTGTATGGATGTTGGAGTAACACTGAAATACTTCGGAATGCACGTATACG
TAGCCGTGAACCCAGGAACAGCTATGGAAGCGCAACAAACAACGTGGCCC
AAAACATGTGCTGCTGGGAAACCGGTTACCTCCAAATGTACTCGTCGAAC
AGACACATGAACGGAACCCACATAAAATCCTTTTCGTAAGGCCCAGACAC
AGTAGAGTGTGGGTTGGTCGTTTGTTGCCTGAGTGTACCTCGCTACTGTA
GTTTTCCCCATTACTTGCACTACTGAAGCGACTCCAAGTACAGCACCGAC
TGTAGTACATCTAGTCGACCTAATCAATACGTGTGACCAGGCATGTGCGA
GTCGAAAACAAACCCTCCCGGAGCATCTACCGTGTACAGTTCTGTGGGCC
GCCCTCTTTGGCTCACTCCTGTCATCGATTTTCTCCCACCTCATACGGAC
AGGGAGCGGGCGATGCGGTCGTGCAGCTAGCCGCAGAGACGGTGAATGTG
GTGCGGCGCTGCTCCACCCCGGAGAAGTGGAAGGAGTGGCTCAAGACCCC
GCTTATTTGTGCAGCCAAGGATGGAGAGTTGGACCTGGTAAAAGCTCTTG
TGGAATCCAGGGCGGACGTGCATGCGGGATTCGGCAGAGACCCCAGAACC
GCCCTCCATGTAAGCCGCTGCCTACGACCACCCCGCAGTCCTGCAGGAGA
TGGTTCGGGCGGGGGCGGACACTGAGGTGACCACGAGAGGGTCTACAGCT
CTGCACATTGCTGCCAGAAAGGGCTGTAAGTTGGCAGTGAAGACTCTCTT
GGGGGCAGGGGCTGCTGTGCATGCCAAGGCGGTAGACAAGGAAGAGACGA
CCGCACTTCATTTGGCTTGCCACCGTGGCCATTCGGGGGTGGTGAGGGGG
CTGCTCGACAGTGGTGCCAATGTGCATGTCAAAGTCGCCTGTGGGGATGA
CAAAGACGTAACACCCCTCCATATGGCTGCTGCTCGTGGCCATGCGGAGG
TGGTGGGGCAGCTGCTGGATGCGGGTGCCATTGTCGATGCCAGAGCGGGC
CTGGGGAGGACAGCACTGCACACAGCCGCCAGCGAGGGCCACACTGCGGT
TGTGCGGCAGCTGGCCGGTGCCGGTGCCAATGTGCATGCCATGGATCAAG
AGCATCATAGTACACCTTTGCATTTGGCGGCTTATGCTGGACATGTGGCG
GTAGTGCAGCGCCTGCTGGACCTGGGGGCGGAGAAAGATGCCAGAGGCCG
TACAGGGTTCACACCTCTCCACAGTGCAGCCTTCAGGGGGCAGTCAGAGT
CAGTCAAAGCCTTCCTTGAGGCAGGTGCCGACAACCGTGCCCGTAGCGAC
AATGGCAACTCGCCCCTTCACTTGGCTTGTTGGCACTGTCAGCAGGCATG
TGTTGAGGTCCTCCTCCGCTTTGGGGCGGATGAGCTGGGCATGGGCAACG
AAGGCCGCACACCCGCCCAGGCTATCGGCCACAGGGTGGGCAATGATGAC
CGGGACCCGGCCACGGAGGCACGCGTCATTGCCATGCTCCAGAAGGCCCC
CTGGGACCGTGCCTGGCACCGCCGGGGGTGGCTGGTCATGATGCAGGCAC
AG
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Coding sequence (CDS) from alignment at S-ischiensis_contig81:469439..472340-

>mRNA_S-ischiensis_contig81.19893.1 ID=mRNA_S-ischiensis_contig81.19893.1|Name=mRNA_S-ischiensis_contig81.19893.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1806bp|location=Sequence derived from alignment at S-ischiensis_contig81:469439..472340- (Schizocladia ischiensis KU_0333)
ATGGTTCGGGCGGGGGCGGACACTGAGGTGACCACGAGAGGGTCTACAGC
TCTGCACATTGCTGCCAGAAAGGGCTGTAAGTTGGCAGTGAAGACTCTCT
TGGGGGCAGGGGCTGCTGTGCATGCCAAGGCGGTAGACAAGGAAGAGACG
ACCGCACTTCATTTGGCTTGCCACCGTGGCCATTCGGGGGTGGTGAGGGG
GCTGCTCGACAGTGGTGCCAATGTGCATGTCAAAGTCGCCTGTGGGGATG
ACAAAGACGTAACACCCCTCCATATGGCTGCTGCTCGTGGCCATGCGGAG
GTGGTGGGGCAGCTGCTGGATGCGGGTGCCATTGTCGATGCCAGAGCGGG
CCTGGGGAGGACAGCACTGCACACAGCCGCCAGCGAGGGCCACACTGCGG
TTGTGCGGCAGCTGGCCGGTGCCGGTGCCAATGTGCATGCCATGGATCAA
GAGCATCATAGTACACCTTTGCATTTGGCGGCTTATGCTGGACATGTGGC
GGTAGTGCAGCGCCTGCTGGACCTGGGGGCGGAGAAAGATGCCAGAGGCC
GTACAGGGTTCACACCTCTCCACAGTGCAGCCTTCAGGGGGCAGTCAGAG
TCAGTCAAAGCCTTCCTTGAGGCAGGTGCCGACAACCGTGCCCGTAGCGA
CAATGGCAACTCGCCCCTTCACTTGGCTTGTTGGCACTGTCAGCAGGCAT
GTGTTGAGGTCCTCCTCCGCTTTGGGGCGGATGAGCTGGGCATGGGCAAC
GAAGGCCGCACACCCGCCCAGGCTATCGGCCACAGGGTGGGCAATGATGA
CCGGGACCCGGCCACGGAGGCACGCGTCATTGCCATGCTCCAGAAGGCCC
CCTGGGACCGTGCCTGGCACCGCCGGGGGTGGCTGGTCATGATGCAGGCA
CAGATGGTTCGGGCGGGGGCGGACACTGAGGTGACCACGAGAGGGTCTAC
AGCTCTGCACATTGCTGCCAGAAAGGGCTGTAAGTTGGCAGTGAAGACTC
TCTTGGGGGCAGGGGCTGCTGTGCATGCCAAGGCGGTAGACAAGGAAGAG
ACGACCGCACTTCATTTGGCTTGCCACCGTGGCCATTCGGGGGTGGTGAG
GGGGCTGCTCGACAGTGGTGCCAATGTGCATGTCAAAGTCGCCTGTGGGG
ATGACAAAGACGTAACACCCCTCCATATGGCTGCTGCTCGTGGCCATGCG
GAGGTGGTGGGGCAGCTGCTGGATGCGGGTGCCATTGTCGATGCCAGAGC
GGGCCTGGGGAGGACAGCACTGCACACAGCCGCCAGCGAGGGCCACACTG
CGGTTGTGCGGCAGCTGGCCGGTGCCGGTGCCAATGTGCATGCCATGGAT
CAAGAGCATCATAGTACACCTTTGCATTTGGCGGCTTATGCTGGACATGT
GGCGGTAGTGCAGCGCCTGCTGGACCTGGGGGCGGAGAAAGATGCCAGAG
GCCGTACAGGGTTCACACCTCTCCACAGTGCAGCCTTCAGGGGGCAGTCA
GAGTCAGTCAAAGCCTTCCTTGAGGCAGGTGCCGACAACCGTGCCCGTAG
CGACAATGGCAACTCGCCCCTTCACTTGGCTTGTTGGCACTGTCAGCAGG
CATGTGTTGAGGTCCTCCTCCGCTTTGGGGCGGATGAGCTGGGCATGGGC
AACGAAGGCCGCACACCCGCCCAGGCTATCGGCCACAGGGTGGGCAATGA
TGACCGGGACCCGGCCACGGAGGCACGCGTCATTGCCATGCTCCAGAAGG
CCCCCTGGGACCGTGCCTGGCACCGCCGGGGGTGGCTGGTCATGATGCAG
GCACAG
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