mRNA_S-ischiensis_contig81.19860.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig81.19860.1
Unique NamemRNA_S-ischiensis_contig81.19860.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig81.19860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig81contigS-ischiensis_contig81:91694..92362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size669
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig81.19860.1prot_S-ischiensis_contig81.19860.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig81 91765..92259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817310.992737-UTR-S-ischiensis_contig81:91693..917641622817310.992737-UTR-S-ischiensis_contig81:91693..91764Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 91694..91764 +
1695741016.6862051-UTR-S-ischiensis_contig81:91693..917641695741016.6862051-UTR-S-ischiensis_contig81:91693..91764Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 91694..91764 +
1622817311.0148978-UTR-S-ischiensis_contig81:92259..923621622817311.0148978-UTR-S-ischiensis_contig81:92259..92362Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 92260..92362 +
1695741016.7096512-UTR-S-ischiensis_contig81:92259..923621695741016.7096512-UTR-S-ischiensis_contig81:92259..92362Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 92260..92362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817311.0039387-CDS-S-ischiensis_contig81:91764..922591622817311.0039387-CDS-S-ischiensis_contig81:91764..92259Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 91765..92259 +
1695741016.69539-CDS-S-ischiensis_contig81:91764..922591695741016.69539-CDS-S-ischiensis_contig81:91764..92259Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 91765..92259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig81.19860.1

>prot_S-ischiensis_contig81.19860.1 ID=prot_S-ischiensis_contig81.19860.1|Name=mRNA_S-ischiensis_contig81.19860.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
MTCPVNRPLPSQAVQALSEEYGRRARLQSTDRLRSSYWVQEPHLVETSRL
VVHFLRPRTCRRRRLCVGSRKDSGKFLLLLGGRGCKLACGCCCFLFVADQ
GRIGPVPETGPLPTTPPAAPTCNMHACTHILPSRVDKDGLGRAGEGEKRG
APPFIGPASPPPYC*
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mRNA from alignment at S-ischiensis_contig81:91694..92362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig81.19860.1 ID=mRNA_S-ischiensis_contig81.19860.1|Name=mRNA_S-ischiensis_contig81.19860.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=669bp|location=Sequence derived from alignment at S-ischiensis_contig81:91694..92362+ (Schizocladia ischiensis KU_0333)
CTGCCACGGTGGCCGCCACCGCCACCCCCCCCGGCCGCTCCAGTGGGAGC
CGCTGTGGCCGCAGCGCGGGCATGACTTGCCCCGTCAACCGCCCCCTGCC
GAGCCAGGCCGTTCAGGCACTGAGTGAGGAATATGGTCGACGTGCCAGAC
TCCAGTCCACGGATCGCCTCAGGAGCTCGTACTGGGTCCAAGAACCACAT
CTTGTAGAGACGAGTCGCCTGGTCGTTCACTTCCTCCGTCCTCGCACTTG
CCGCCGCCGCCGATTGTGCGTGGGCAGCCGCAAGGACAGCGGCAAGTTTC
TCCTTCTCCTAGGCGGGCGCGGTTGCAAGTTGGCCTGCGGGTGCTGCTGC
TTCCTGTTCGTGGCCGACCAGGGCCGCATTGGCCCGGTACCAGAGACAGG
CCCGCTCCCCACAACCCCTCCGGCAGCCCCTACGTGCAACATGCATGCCT
GCACACACATACTTCCAAGTAGAGTGGATAAAGATGGGTTGGGGAGGGCG
GGGGAGGGGGAAAAGAGAGGAGCCCCCCCATTCATTGGGCCTGCATCACC
CCCTCCTTACTGTTAGAAGCTCACCTCCCCCTTCTTCTCCACATTGAAAC
CATTTCTCGAAGGTCCATGGGTGTGGCTGTTTACCTCGCAGTGCGGACAT
GCCAGGCGCATGCTGCCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig81:91694..92362+

>mRNA_S-ischiensis_contig81.19860.1 ID=mRNA_S-ischiensis_contig81.19860.1|Name=mRNA_S-ischiensis_contig81.19860.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig81:91694..92362+ (Schizocladia ischiensis KU_0333)
ATGACTTGCCCCGTCAACCGCCCCCTGCCGAGCCAGGCCGTTCAGGCACT
GAGTGAGGAATATGGTCGACGTGCCAGACTCCAGTCCACGGATCGCCTCA
GGAGCTCGTACTGGGTCCAAGAACCACATCTTGTAGAGACGAGTCGCCTG
GTCGTTCACTTCCTCCGTCCTCGCACTTGCCGCCGCCGCCGATTGTGCGT
GGGCAGCCGCAAGGACAGCGGCAAGTTTCTCCTTCTCCTAGGCGGGCGCG
GTTGCAAGTTGGCCTGCGGGTGCTGCTGCTTCCTGTTCGTGGCCGACCAG
GGCCGCATTGGCCCGGTACCAGAGACAGGCCCGCTCCCCACAACCCCTCC
GGCAGCCCCTACGTGCAACATGCATGCCTGCACACACATACTTCCAAGTA
GAGTGGATAAAGATGGGTTGGGGAGGGCGGGGGAGGGGGAAAAGAGAGGA
GCCCCCCCATTCATTGGGCCTGCATCACCCCCTCCTTACTGTTAGATGAC
TTGCCCCGTCAACCGCCCCCTGCCGAGCCAGGCCGTTCAGGCACTGAGTG
AGGAATATGGTCGACGTGCCAGACTCCAGTCCACGGATCGCCTCAGGAGC
TCGTACTGGGTCCAAGAACCACATCTTGTAGAGACGAGTCGCCTGGTCGT
TCACTTCCTCCGTCCTCGCACTTGCCGCCGCCGCCGATTGTGCGTGGGCA
GCCGCAAGGACAGCGGCAAGTTTCTCCTTCTCCTAGGCGGGCGCGGTTGC
AAGTTGGCCTGCGGGTGCTGCTGCTTCCTGTTCGTGGCCGACCAGGGCCG
CATTGGCCCGGTACCAGAGACAGGCCCGCTCCCCACAACCCCTCCGGCAG
CCCCTACGTGCAACATGCATGCCTGCACACACATACTTCCAAGTAGAGTG
GATAAAGATGGGTTGGGGAGGGCGGGGGAGGGGGAAAAGAGAGGAGCCCC
CCCATTCATTGGGCCTGCATCACCCCCTCCTTACTGTTAG
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