mRNA_S-ischiensis_contig80.19853.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig80.19853.1
Unique NamemRNA_S-ischiensis_contig80.19853.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig80.19853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig80contigS-ischiensis_contig80:738782..739502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size721
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig80.19853.1prot_S-ischiensis_contig80.19853.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig80 738829..739455 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.3632476-UTR-S-ischiensis_contig80:738781..7388281622817307.3632476-UTR-S-ischiensis_contig80:738781..738828Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 738782..738828 +
1695741013.6269352-UTR-S-ischiensis_contig80:738781..7388281695741013.6269352-UTR-S-ischiensis_contig80:738781..738828Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 738782..738828 +
1622817307.391079-UTR-S-ischiensis_contig80:739455..7395021622817307.391079-UTR-S-ischiensis_contig80:739455..739502Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 739456..739502 +
1695741013.6448865-UTR-S-ischiensis_contig80:739455..7395021695741013.6448865-UTR-S-ischiensis_contig80:739455..739502Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 739456..739502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.3794057-CDS-S-ischiensis_contig80:738828..7394551622817307.3794057-CDS-S-ischiensis_contig80:738828..739455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 738829..739455 +
1695741013.6359215-CDS-S-ischiensis_contig80:738828..7394551695741013.6359215-CDS-S-ischiensis_contig80:738828..739455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 738829..739455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig80.19853.1

>prot_S-ischiensis_contig80.19853.1 ID=prot_S-ischiensis_contig80.19853.1|Name=mRNA_S-ischiensis_contig80.19853.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=209bp
MQLCLHVHTQLCHLRHQVICRTNHSGISKPRHAQRFSARSSVVLVCKRVT
HLRHAAVERTAPRGARRIAARAACKHRGRQRWDPGGGWITMLVHGRITLV
HSRGTHNVQVGSCDKRTPGPQCVCSTALQHFCAGMSCTIAAQSNLDKSQL
LRPGTSCVANALWSTASSVGVCTLLGSQCAIGVSTRIAFQFLGCACTAVP
VVAGVPCT*
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mRNA from alignment at S-ischiensis_contig80:738782..739502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig80.19853.1 ID=mRNA_S-ischiensis_contig80.19853.1|Name=mRNA_S-ischiensis_contig80.19853.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=721bp|location=Sequence derived from alignment at S-ischiensis_contig80:738782..739502+ (Schizocladia ischiensis KU_0333)
AGGGTTTCGGACTTGGTCAGGTCCTGCCGTATCGCGTTCATGCCCGCATG
CAGCTCTGCCTTCACGTCCACACGCAACTCTGCCATCTGCGCCATCAAGT
CATCTGCCGGACAAACCACAGCGGTATCAGCAAGCCTAGGCATGCACAGC
GCTTTTCAGCTAGGTCAAGCGTCGTGCTAGTGTGTAAACGCGTAACACAC
CTGCGTCATGCCGCAGTTGAGAGGACGGCACCCCGTGGAGCAAGGAGGAT
CGCAGCGAGGGCAGCATGCAAGCACAGAGGCAGGCAACGGTGGGACCCAG
GTGGGGGGTGGATTACTATGTTAGTGCACGGGCGCATCACCCTGGTGCAC
TCAAGGGGCACCCACAATGTCCAGGTGGGGTCTTGCGACAAGCGCACTCC
CGGGCCACAATGTGTATGTAGTACTGCACTACAGCATTTTTGTGCGGGGA
TGTCATGTACAATTGCTGCACAATCAAACTTGGACAAATCACAGCTGCTT
CGACCTGGAACAAGCTGCGTGGCCAATGCTCTCTGGTCTACGGCAAGCTC
TGTAGGTGTATGTACACTACTAGGTAGTCAGTGTGCCATAGGGGTATCTA
CCAGGATTGCCTTTCAGTTCCTGGGATGTGCTTGTACAGCAGTACCTGTA
GTTGCTGGTGTGCCTTGTACATGAATGACAATTTACTCTTGACTGGTTCT
CAATGGCAACATTCACACAAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig80:738782..739502+

>mRNA_S-ischiensis_contig80.19853.1 ID=mRNA_S-ischiensis_contig80.19853.1|Name=mRNA_S-ischiensis_contig80.19853.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1254bp|location=Sequence derived from alignment at S-ischiensis_contig80:738782..739502+ (Schizocladia ischiensis KU_0333)
ATGCAGCTCTGCCTTCACGTCCACACGCAACTCTGCCATCTGCGCCATCA
AGTCATCTGCCGGACAAACCACAGCGGTATCAGCAAGCCTAGGCATGCAC
AGCGCTTTTCAGCTAGGTCAAGCGTCGTGCTAGTGTGTAAACGCGTAACA
CACCTGCGTCATGCCGCAGTTGAGAGGACGGCACCCCGTGGAGCAAGGAG
GATCGCAGCGAGGGCAGCATGCAAGCACAGAGGCAGGCAACGGTGGGACC
CAGGTGGGGGGTGGATTACTATGTTAGTGCACGGGCGCATCACCCTGGTG
CACTCAAGGGGCACCCACAATGTCCAGGTGGGGTCTTGCGACAAGCGCAC
TCCCGGGCCACAATGTGTATGTAGTACTGCACTACAGCATTTTTGTGCGG
GGATGTCATGTACAATTGCTGCACAATCAAACTTGGACAAATCACAGCTG
CTTCGACCTGGAACAAGCTGCGTGGCCAATGCTCTCTGGTCTACGGCAAG
CTCTGTAGGTGTATGTACACTACTAGGTAGTCAGTGTGCCATAGGGGTAT
CTACCAGGATTGCCTTTCAGTTCCTGGGATGTGCTTGTACAGCAGTACCT
GTAGTTGCTGGTGTGCCTTGTACATGAATGCAGCTCTGCCTTCACGTCCA
CACGCAACTCTGCCATCTGCGCCATCAAGTCATCTGCCGGACAAACCACA
GCGGTATCAGCAAGCCTAGGCATGCACAGCGCTTTTCAGCTAGGTCAAGC
GTCGTGCTAGTGTGTAAACGCGTAACACACCTGCGTCATGCCGCAGTTGA
GAGGACGGCACCCCGTGGAGCAAGGAGGATCGCAGCGAGGGCAGCATGCA
AGCACAGAGGCAGGCAACGGTGGGACCCAGGTGGGGGGTGGATTACTATG
TTAGTGCACGGGCGCATCACCCTGGTGCACTCAAGGGGCACCCACAATGT
CCAGGTGGGGTCTTGCGACAAGCGCACTCCCGGGCCACAATGTGTATGTA
GTACTGCACTACAGCATTTTTGTGCGGGGATGTCATGTACAATTGCTGCA
CAATCAAACTTGGACAAATCACAGCTGCTTCGACCTGGAACAAGCTGCGT
GGCCAATGCTCTCTGGTCTACGGCAAGCTCTGTAGGTGTATGTACACTAC
TAGGTAGTCAGTGTGCCATAGGGGTATCTACCAGGATTGCCTTTCAGTTC
CTGGGATGTGCTTGTACAGCAGTACCTGTAGTTGCTGGTGTGCCTTGTAC
ATGA
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