mRNA_S-ischiensis_contig80.19837.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig80.19837.1
Unique NamemRNA_S-ischiensis_contig80.19837.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig80.19837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig80contigS-ischiensis_contig80:515426..515812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.028116-UTR-S-ischiensis_contig80:515425..5154851622817307.028116-UTR-S-ischiensis_contig80:515425..515485Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 515426..515485 +
1695741013.447566-UTR-S-ischiensis_contig80:515425..5154851695741013.447566-UTR-S-ischiensis_contig80:515425..515485Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 515426..515485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.0393887-CDS-S-ischiensis_contig80:515485..5158121622817307.0393887-CDS-S-ischiensis_contig80:515485..515812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 515486..515812 +
1695741013.4581685-CDS-S-ischiensis_contig80:515485..5158121695741013.4581685-CDS-S-ischiensis_contig80:515485..515812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 515486..515812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig80.19837.1prot_S-ischiensis_contig80.19837.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig80 515486..515812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig80.19837.1

>prot_S-ischiensis_contig80.19837.1 ID=prot_S-ischiensis_contig80.19837.1|Name=mRNA_S-ischiensis_contig80.19837.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
MNGFWTSWVADRMGPVESNAMARMASVASASKTRGAPNSWEACTSSRRRG
SVASRLLLGTGAHGGTNRALCRKVSQPLGSQGMNHTVEGNRSAQPLNDLV
GAPYGPPLV
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mRNA from alignment at S-ischiensis_contig80:515426..515812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig80.19837.1 ID=mRNA_S-ischiensis_contig80.19837.1|Name=mRNA_S-ischiensis_contig80.19837.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=387bp|location=Sequence derived from alignment at S-ischiensis_contig80:515426..515812+ (Schizocladia ischiensis KU_0333)
TTGCTCTGCATGAGGGCGCTGAAGAGGTCGTAGAACCGGCGACCCTCCGC
TGCTATCACGATGAACGGATTCTGGACCTCGTGGGTGGCGGACAGGATGG
GGCCGGTAGAGAGCAACGCGATGGCACGCATGGCCTCCGTGGCGTCCGCG
TCCAAGACGAGAGGGGCGCCAAACTCCTGGGAGGCATGCACGTCTTCACG
GCGCAGAGGCTCGGTCGCATCCAGGCTCCTCCTCGGAACGGGCGCACATG
GCGGGACCAACAGAGCACTGTGTCGTAAGGTCTCCCAGCCACTGGGCTCC
CAGGGTATGAACCACACGGTCGAGGGGAACAGGAGCGCACAGCCCCTGAA
TGATCTGGTCGGCGCACCCTACGGTCCGCCCCTTGTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig80:515426..515812+

>mRNA_S-ischiensis_contig80.19837.1 ID=mRNA_S-ischiensis_contig80.19837.1|Name=mRNA_S-ischiensis_contig80.19837.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig80:515426..515812+ (Schizocladia ischiensis KU_0333)
ATGAACGGATTCTGGACCTCGTGGGTGGCGGACAGGATGGGGCCGGTAGA
GAGCAACGCGATGGCACGCATGGCCTCCGTGGCGTCCGCGTCCAAGACGA
GAGGGGCGCCAAACTCCTGGGAGGCATGCACGTCTTCACGGCGCAGAGGC
TCGGTCGCATCCAGGCTCCTCCTCGGAACGGGCGCACATGGCGGGACCAA
CAGAGCACTGTGTCGTAAGGTCTCCCAGCCACTGGGCTCCCAGGGTATGA
ACCACACGGTCGAGGGGAACAGGAGCGCACAGCCCCTGAATGATCTGGTC
GGCGCACCCTACGGTCCGCCCCTTGTTATGAACGGATTCTGGACCTCGTG
GGTGGCGGACAGGATGGGGCCGGTAGAGAGCAACGCGATGGCACGCATGG
CCTCCGTGGCGTCCGCGTCCAAGACGAGAGGGGCGCCAAACTCCTGGGAG
GCATGCACGTCTTCACGGCGCAGAGGCTCGGTCGCATCCAGGCTCCTCCT
CGGAACGGGCGCACATGGCGGGACCAACAGAGCACTGTGTCGTAAGGTCT
CCCAGCCACTGGGCTCCCAGGGTATGAACCACACGGTCGAGGGGAACAGG
AGCGCACAGCCCCTGAATGATCTGGTCGGCGCACCCTACGGTCCGCCCCT
TGTT
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