mRNA_S-ischiensis_contig8.19787.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19787.1
Unique NamemRNA_S-ischiensis_contig8.19787.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3997007..3998688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size530
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.7117136-CDS-S-ischiensis_contig8:3997008..39971731622817264.7117136-CDS-S-ischiensis_contig8:3997008..3997173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3997009..3997173 -
1695740979.9452856-CDS-S-ischiensis_contig8:3997008..39971731695740979.9452856-CDS-S-ischiensis_contig8:3997008..3997173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3997009..3997173 -
1622817264.7228425-CDS-S-ischiensis_contig8:3998325..39986881622817264.7228425-CDS-S-ischiensis_contig8:3998325..3998688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3998326..3998688 -
1695740979.9567301-CDS-S-ischiensis_contig8:3998325..39986881695740979.9567301-CDS-S-ischiensis_contig8:3998325..3998688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3998326..3998688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19787.1prot_S-ischiensis_contig8.19787.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3997009..3998688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19787.1

>prot_S-ischiensis_contig8.19787.1 ID=prot_S-ischiensis_contig8.19787.1|Name=mRNA_S-ischiensis_contig8.19787.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
PGGLERPPPAKQAAHRAASMVVAGGSLPARGSRRGSPGLVNRSTSAPPGP
GKKRAGLTLPAPTQILESLERGGDGGGGTVLAEGGPGGPVAGGKQALGPL
PAPSKRLPQQVLPGSAVSHDPAETLARPDSRSDSSDSDGAPPLARVAPMG
TTASSVDPQSATRLFTVLPISKHLVG
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mRNA from alignment at S-ischiensis_contig8:3997007..3998688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19787.1 ID=mRNA_S-ischiensis_contig8.19787.1|Name=mRNA_S-ischiensis_contig8.19787.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1682bp|location=Sequence derived from alignment at S-ischiensis_contig8:3997007..3998688- (Schizocladia ischiensis KU_0333)
CCGGGCGGGCTGGAGAGGCCTCCTCCGGCCAAGCAGGCCGCCCACCGTGC
CGCCTCTATGGTGGTCGCGGGGGGGTCCCTGCCTGCGAGGGGGTCCCGCC
GGGGCAGCCCGGGGTTGGTGAACAGGTCAACTTCAGCGCCTCCCGGCCCG
GGGAAGAAGCGGGCGGGGCTCACCCTGCCGGCCCCGACACAGATCCTGGA
GTCTTTGGAGCGAGGGGGCGATGGCGGAGGAGGAACGGTGCTGGCTGAAG
GTGGCCCCGGTGGCCCCGTGGCCGGTGGGAAGCAGGCGTTGGGGCCCCTG
CCGGCGCCTTCCAAGCGGTTGCCTCAGCAGGTGCTGCCTGGATCGGCGGT
CAGCCATGACCCGGTAAGAAAAACTCAAGGGTAGTGGTGTATGTACTCAT
GATTCACGCGCATTGTCTCCTCCGCTCTCTGTGTGTAGTCATACTCGTAG
AACTATATATAGAGTATATGGAGGGCAACCCGAAGTTTCTACTTAAGGCC
GTCGGCATTGCACGCAAGGTTATGTCGCAAGACAAACCAATGAGTACATA
TATATATATACTCACGTTGTGCTTGCCGTAGCCCCGAGGCCATTGATCAC
TCATACTTGAAGTACTTAGCACTATACTAAGTGTACTCACAGTAGTATCC
GTTTGCATGCACTGCACGAGTACAACACATCAGATACAAGCCAAGCAAGG
TACTTCGACGTAGTTCATTAGGTACCTGTGCGTGGTCAGGACACCATGGC
GTCCCCTGAGTCTCAATTTGTGCGCCAACACATGTGCTCGTGCCGTACAC
GTGTGTAATGGCAATGGTTGACAAGAGGGAACGTGCGCCTTCAAGAGATT
CCCAAGTTCCGCCCCTTAAAACAGCTTCAAGCTACCGCAAGCCGCAGTAT
TTCTTCAATGCCCCTGGTCTCGGGCGTTTGGCCAAGCAAATCAGGGCCAT
CTGCCCTGCCACAATCTGCCATGATATCTGCTTTACTACAGTACAAGTAC
TACAGTATAATTATCCGAAGTAGTACAGTAGTACGAGTATGGCCAGTGCT
TCAAAGTACGAAGTACTTACTACTCGTAGGTACTGTACAGTACTTTGCAG
CAGACCGGTGTTACTTCGAAGTACTAGATACTGTACCAGCACTTTGCAGC
AGTAGACCGGGACTCTCCCCGCCTCGGCATATACCATCTCGCCTGCAACC
GAGCCGTTGATACAGGAGCAGAGCACGACCAACAAAACCAGCCCGTCCGT
TCCCGGCGGTCAGAACGGCCATGAACCGAACGATATCCATTCGCTTCCCC
GCTCGGTATCGTCCGGTACCAACGTGCACCAGTGATGGAATATCTAGGCA
AATCAACCTATTTGTCGACAGTACTGATCCATATATCTATCGATAGTCGA
TATTCGATAGTTTGGCACACACTAAATCCAAGTAGTTAGTGACGCCACCC
ACAAAATCACTCGAGCCCGGTAACTATTTACGGATCGATATTCCATCACT
GCCGTGCACTGGCAGGCCGAGACACTGGCGCGGCCTGACAGCCGCTCGGA
CAGCAGCGACTCCGACGGGGCACCACCGCTGGCAAGAGTAGCGCCAATGG
GCACTACGGCATCATCCGTGGATCCTCAGTCCGCTACACGACTCTTCACG
GTCCTCCCTATCAGCAAGCACCTTGTTGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3997007..3998688-

>mRNA_S-ischiensis_contig8.19787.1 ID=mRNA_S-ischiensis_contig8.19787.1|Name=mRNA_S-ischiensis_contig8.19787.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig8:3997007..3998688- (Schizocladia ischiensis KU_0333)
CCGGGCGGGCTGGAGAGGCCTCCTCCGGCCAAGCAGGCCGCCCACCGTGC
CGCCTCTATGGTGGTCGCGGGGGGGTCCCTGCCTGCGAGGGGGTCCCGCC
GGGGCAGCCCGGGGTTGGTGAACAGGTCAACTTCAGCGCCTCCCGGCCCG
GGGAAGAAGCGGGCGGGGCTCACCCTGCCGGCCCCGACACAGATCCTGGA
GTCTTTGGAGCGAGGGGGCGATGGCGGAGGAGGAACGGTGCTGGCTGAAG
GTGGCCCCGGTGGCCCCGTGGCCGGTGGGAAGCAGGCGTTGGGGCCCCTG
CCGGCGCCTTCCAAGCGGTTGCCTCAGCAGGTGCTGCCTGGATCGGCGGT
CAGCCATGACCCGCCGGGCGGGCTGGAGAGGCCTCCTCCGGCCAAGCAGG
CCGCCCACCGTGCCGCCTCTATGGTGGTCGCGGGGGGGTCCCTGCCTGCG
AGGGGGTCCCGCCGGGGCAGCCCGGGGTTGGTGAACAGGTCAACTTCAGC
GCCTCCCGGCCCGGGGAAGAAGCGGGCGGGGCTCACCCTGCCGGCCCCGA
CACAGATCCTGGAGTCTTTGGAGCGAGGGGGCGATGGCGGAGGAGGAACG
GTGCTGGCTGAAGGTGGCCCCGGTGGCCCCGTGGCCGGTGGGAAGCAGGC
GTTGGGGCCCCTGCCGGCGCCTTCCAAGCGGTTGCCTCAGCAGGTGCTGC
CTGGATCGGCGGTCAGCCATGACCCGGCCGAGACACTGGCGCGGCCTGAC
AGCCGCTCGGACAGCAGCGACTCCGACGGGGCACCACCGCTGGCAAGAGT
AGCGCCAATGGGCACTACGGCATCATCCGTGGATCCTCAGTCCGCTACAC
GACTCTTCACGGTCCTCCCTATCAGCAAGCACCTTGTTGGGGCCGAGACA
CTGGCGCGGCCTGACAGCCGCTCGGACAGCAGCGACTCCGACGGGGCACC
ACCGCTGGCAAGAGTAGCGCCAATGGGCACTACGGCATCATCCGTGGATC
CTCAGTCCGCTACACGACTCTTCACGGTCCTCCCTATCAGCAAGCACCTT
GTTGGG
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