mRNA_S-ischiensis_contig8.19782.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19782.1
Unique NamemRNA_S-ischiensis_contig8.19782.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19782.1 vs. uniprot
Match: A0A7S3XV21_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV21_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 7.910e-10
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   61 DGSPVIRAASLVDGGLYFARPTENCALLRSLT--REEQERYPAWPSIDEGNKAKLDLAESIQEWGHQESI 264
            +G+PV R ASLVDG +Y ARPTE+CAL+RS+   +E +ER PA+  I+    A+L+L   ++E+  + +I
Sbjct:    1 EGTPVHRIASLVDGAVYIARPTEDCALVRSILIDKENKERIPAYKHIERARLARLELKARMEEYNLESAI 70
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BLAST of mRNA_S-ischiensis_contig8.19782.1 vs. uniprot
Match: A0A7S2DN42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DN42_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.190e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   28 LEVIDGIYDDFDGSPVIRAASLVDGGLYFARPTENCALLRSLTREEQERYPAWPSIDEGNKAKLDLAESI 237
            L+ I+G+Y ++   PV+   +LV+   Y  RPTE CAL+RSLT +    YP+ P ++ G  A  DL  SI
Sbjct:    1 LDSIEGVYTEWKMYPVLCIKTLVNYATYVVRPTEGCALIRSLTVDRNGEYPSLPLVEAGKHAVRDLQSSI 70
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XV21_HETAK7.910e-1045.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2DN42_9STRA3.190e-741.43Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3930228..3932337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-00_005760.1
Exons4
Model size774
Cds size774
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19782.1prot_S-ischiensis_contig8.19782.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3930228..3932337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817303.8214397-CDS-S-ischiensis_contig8:3930227..39303521622817303.8214397-CDS-S-ischiensis_contig8:3930227..3930352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3930228..3930352 -
1695741010.978293-CDS-S-ischiensis_contig8:3930227..39303521695741010.978293-CDS-S-ischiensis_contig8:3930227..3930352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3930228..3930352 -
1622817303.837083-CDS-S-ischiensis_contig8:3931055..39314251622817303.837083-CDS-S-ischiensis_contig8:3931055..3931425Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3931056..3931425 -
1695741010.9896064-CDS-S-ischiensis_contig8:3931055..39314251695741010.9896064-CDS-S-ischiensis_contig8:3931055..3931425Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3931056..3931425 -
1622817303.8491976-CDS-S-ischiensis_contig8:3931720..39318701622817303.8491976-CDS-S-ischiensis_contig8:3931720..3931870Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3931721..3931870 -
1695741011.000134-CDS-S-ischiensis_contig8:3931720..39318701695741011.000134-CDS-S-ischiensis_contig8:3931720..3931870Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3931721..3931870 -
1622817303.8608475-CDS-S-ischiensis_contig8:3932208..39323371622817303.8608475-CDS-S-ischiensis_contig8:3932208..3932337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3932209..3932337 -
1695741011.0113037-CDS-S-ischiensis_contig8:3932208..39323371695741011.0113037-CDS-S-ischiensis_contig8:3932208..3932337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3932209..3932337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19782.1

>prot_S-ischiensis_contig8.19782.1 ID=prot_S-ischiensis_contig8.19782.1|Name=mRNA_S-ischiensis_contig8.19782.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=258bp
MHRVSRDLGLEVIDGIYDDFDGSPVIRAASLVDGGLYFARPTENCALLRS
LTREEQERYPAWPSIDEGNKAKLDLAESIQEWGHQESIMPTPQESGKTKP
GTPAGSMEGQEGSGRPAPAPKCMCVKQGFKCPVFATPDLSPPEVATLGMG
EVVMVTSEWGEAFESHSARGKGKVARIYSPKDGFVERRRLEKAEGGSVPA
GQELTPLERMQLVHKAASAQETLQALLQKGSYFRGTRNIHQDVDVHRAAL
RGMATLAR
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mRNA from alignment at S-ischiensis_contig8:3930228..3932337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19782.1 ID=mRNA_S-ischiensis_contig8.19782.1|Name=mRNA_S-ischiensis_contig8.19782.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2110bp|location=Sequence derived from alignment at S-ischiensis_contig8:3930228..3932337- (Schizocladia ischiensis KU_0333)
ATGCACCGAGTTTCAAGAGATCTTGGGCTGGAAGTGATTGACGGCATCTA
CGATGACTTCGATGGTTCTCCGGTCATACGAGCGGCAAGTCTGGTGGATG
GGGGTCTCTACTTTGCACGACCAACCGAGGTGAGCCACCCCATGAACCTG
GGGCTGTGTCAGATATAAAGCTGTGTCTGTGCGTGTTTCCAGAGTAGCAC
ATAAACCGCAAAACGCAGTAGTGTACCGTGAGCCCCAAGGTGCCCGTATT
TCAGCTGTAAATACTCTGTTGCAATACATTCACGATGCACAAGTCCAACA
CCTGAAGAATTGAAACTGATGAACTCTCCCAGACAGTTACCACTGGCTTA
CTTGGCTGAAATACGTTCAGTTCCAAGCTCTACTAATTGGTACTTTAGTT
GGAAGACGTTTCTATCGCAAGATGGCTCGGCAAGAGACGAGGTCACTCGG
CCGTTCCCTGGTTGCAGAACTGTGCCCTGCTGCGGAGTCTGACACGGGAG
GAGCAGGAACGGTACCCTGCTTGGCCCAGCATCGATGAGGGAAACAAGGC
CAAGCTGGATCTGGCGGAGAGTATTCAGGAATGGGGCCATCAGGAATCCA
TCATGCCAACCCCACAGGTACTGGGCATTGGCGGGTGAAGGGGCAGGCAC
TCAATCGACACAGAATTTGGGGCTTTGTTCGTTGGGGGCAGCTGATCTTC
CCTGTGCAGTACTACTGTGCATCTCTCCATTGCGTTTTGAAGTACATACT
ACGCGAAACTGCGCGCTTCATAGCCCCAGCGTAATCACACCCCAAGCCCA
CAAGCAGACCACTCCAACAGGTGGTACTTCGTAGTCATGATGAAGATCGT
CTGAGGCCGGCCACAACATGCCCTCCTTTATCGATCGGCACCCGCTGCGG
AACACCCCCCAGGAGAGCGGGAAAACCAAACCGGGCACGCCGGCGGGCTC
CATGGAAGGCCAAGAGGGGTCCGGCAGACCCGCCCCCGCGCCAAAGTGCA
TGTGCGTCAAGCAAGGGTTCAAGTGCCCGGTCTTTGCCACCCCCGACTTG
TCTCCCCCGGAGGTGGCTACCTTGGGCATGGGGGAGGTTGTCATGGTCAC
GTCGGAGTGGGGGGAAGCCTTTGAGTCTCACTCCGCGCGGGGCAAGGGGA
AAGTGGCGAGGATTTACTCCCCCAAGGACGGGTTTGTGGAACGCCGTCGC
CTGGAGAAGGCGGAGGGGGGGTCTGTCCCGGCCGGGCAAGAGCTGACCCC
GTTGGAAAGGATGCAGCTCGTCCACAAGGCCGGTGCGTGCCCCGCTGTTT
GTGCACGGTGCCCCTCATTGTCTGGACCGGTTCGTGTCCGGCTGTTCGTG
CATGGTGCCCCTGGATGTATGGTAGCAACCACTTGGACAGCACTAGTACT
CGTACTACTACTACTCGAGTAGTATTACATACACTACTACTCATACTACC
ACTTGTACTACTACTGGACTACTAGGGCTCTACTACTGCTTCTACACTAC
TACTACTACTACTACGGTACTCAAGTACTACCACTGCCACACAAGGTGCA
GTAGAGTACTCGAGTATGTGGTACACTACCATAGTACTTCGAAGTACTTC
AGCACTACTGTACTTACTGTATACTCGTCCTTACTCTGCACTGCTAGTGT
ATGTACTGCTTCGAAGTACGAGTACTACTTCTTTGAAGGATTGCTCTAAG
TCCTATGTACTACGCTGCCGGAGGGCAAACCCAAGGTTTAAAGCTCCAGC
GGCTATCGACGAAGCACACAAGGCTGTGCCGCAATACAACGAAGCTAAGA
GTACACACTATGTGGTCTTGTACTAGTGCATACTACTGCCCATACTTCGT
GGGGAAGTGCTGTACTCATAGTACTACAAGTACTGTGCCCCACCATGTAC
TACTTCTACTTCGTACTTCATAGTACAGCTACACCCCCGCTCACTCACAC
ACCGCCGCCCCCTGGCCGGCACGACTCTGGCCCAGCTTCGGCACAGGAGA
CCCTGCAGGCTCTGCTGCAGAAGGGCAGCTACTTCAGGGGCACTCGCAAC
ATACACCAGGATGTCGACGTGCACCGCGCGGCCCTCCGAGGGATGGCCAC
CTTAGCACGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3930228..3932337-

>mRNA_S-ischiensis_contig8.19782.1 ID=mRNA_S-ischiensis_contig8.19782.1|Name=mRNA_S-ischiensis_contig8.19782.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1548bp|location=Sequence derived from alignment at S-ischiensis_contig8:3930228..3932337- (Schizocladia ischiensis KU_0333)
ATGCACCGAGTTTCAAGAGATCTTGGGCTGGAAGTGATTGACGGCATCTA
CGATGACTTCGATGGTTCTCCGGTCATACGAGCGGCAAGTCTGGTGGATG
GGGGTCTCTACTTTGCACGACCAACCGAGATGCACCGAGTTTCAAGAGAT
CTTGGGCTGGAAGTGATTGACGGCATCTACGATGACTTCGATGGTTCTCC
GGTCATACGAGCGGCAAGTCTGGTGGATGGGGGTCTCTACTTTGCACGAC
CAACCGAGAACTGTGCCCTGCTGCGGAGTCTGACACGGGAGGAGCAGGAA
CGGTACCCTGCTTGGCCCAGCATCGATGAGGGAAACAAGGCCAAGCTGGA
TCTGGCGGAGAGTATTCAGGAATGGGGCCATCAGGAATCCATCATGCCAA
CCCCACAGAACTGTGCCCTGCTGCGGAGTCTGACACGGGAGGAGCAGGAA
CGGTACCCTGCTTGGCCCAGCATCGATGAGGGAAACAAGGCCAAGCTGGA
TCTGGCGGAGAGTATTCAGGAATGGGGCCATCAGGAATCCATCATGCCAA
CCCCACAGGAGAGCGGGAAAACCAAACCGGGCACGCCGGCGGGCTCCATG
GAAGGCCAAGAGGGGTCCGGCAGACCCGCCCCCGCGCCAAAGTGCATGTG
CGTCAAGCAAGGGTTCAAGTGCCCGGTCTTTGCCACCCCCGACTTGTCTC
CCCCGGAGGTGGCTACCTTGGGCATGGGGGAGGTTGTCATGGTCACGTCG
GAGTGGGGGGAAGCCTTTGAGTCTCACTCCGCGCGGGGCAAGGGGAAAGT
GGCGAGGATTTACTCCCCCAAGGACGGGTTTGTGGAACGCCGTCGCCTGG
AGAAGGCGGAGGGGGGGTCTGTCCCGGCCGGGCAAGAGCTGACCCCGTTG
GAAAGGATGCAGCTCGTCCACAAGGCCGGAGAGCGGGAAAACCAAACCGG
GCACGCCGGCGGGCTCCATGGAAGGCCAAGAGGGGTCCGGCAGACCCGCC
CCCGCGCCAAAGTGCATGTGCGTCAAGCAAGGGTTCAAGTGCCCGGTCTT
TGCCACCCCCGACTTGTCTCCCCCGGAGGTGGCTACCTTGGGCATGGGGG
AGGTTGTCATGGTCACGTCGGAGTGGGGGGAAGCCTTTGAGTCTCACTCC
GCGCGGGGCAAGGGGAAAGTGGCGAGGATTTACTCCCCCAAGGACGGGTT
TGTGGAACGCCGTCGCCTGGAGAAGGCGGAGGGGGGGTCTGTCCCGGCCG
GGCAAGAGCTGACCCCGTTGGAAAGGATGCAGCTCGTCCACAAGGCCGCT
TCGGCACAGGAGACCCTGCAGGCTCTGCTGCAGAAGGGCAGCTACTTCAG
GGGCACTCGCAACATACACCAGGATGTCGACGTGCACCGCGCGGCCCTCC
GAGGGATGGCCACCTTAGCACGCCTTCGGCACAGGAGACCCTGCAGGCTC
TGCTGCAGAAGGGCAGCTACTTCAGGGGCACTCGCAACATACACCAGGAT
GTCGACGTGCACCGCGCGGCCCTCCGAGGGATGGCCACCTTAGCACGC
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