mRNA_S-ischiensis_contig8.19779.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19779.1
Unique NamemRNA_S-ischiensis_contig8.19779.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3908634..3909197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817269.1080637-CDS-S-ischiensis_contig8:3908633..39089421622817269.1080637-CDS-S-ischiensis_contig8:3908633..3908942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3908634..3908942 +
1695740982.4575357-CDS-S-ischiensis_contig8:3908633..39089421695740982.4575357-CDS-S-ischiensis_contig8:3908633..3908942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3908634..3908942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817269.1200051-UTR-S-ischiensis_contig8:3908942..39091971622817269.1200051-UTR-S-ischiensis_contig8:3908942..3909197Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3908943..3909197 +
1695740982.4699717-UTR-S-ischiensis_contig8:3908942..39091971695740982.4699717-UTR-S-ischiensis_contig8:3908942..3909197Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3908943..3909197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19779.1prot_S-ischiensis_contig8.19779.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3908634..3908942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19779.1

>prot_S-ischiensis_contig8.19779.1 ID=prot_S-ischiensis_contig8.19779.1|Name=mRNA_S-ischiensis_contig8.19779.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=103bp
HTASSHSQGPPTPSQPPPWEWEEAPSQLPPCQLPANSQPTPSQLPPNSQP
IRQLPANSPPGSGRRLRDGVVRAWARERFAIRVRMGVRSPSMPFVSSMFC
VA*
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mRNA from alignment at S-ischiensis_contig8:3908634..3909197+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19779.1 ID=mRNA_S-ischiensis_contig8.19779.1|Name=mRNA_S-ischiensis_contig8.19779.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=564bp|location=Sequence derived from alignment at S-ischiensis_contig8:3908634..3909197+ (Schizocladia ischiensis KU_0333)
CACACAGCCTCCTCCCACTCGCAGGGTCCGCCAACTCCCAGCCAACCCCC
CCCCTGGGAGTGGGAGGAGGCTCCCAGCCAACTCCCCCCCTGCCAACTCC
CAGCCAACTCCCAGCCAACTCCCAGCCAACTCCCCCCCAACTCCCAGCCA
ATCCGCCAACTCCCAGCCAACTCCCCCCCTGGGAGTGGGAGGAGGCTGCG
TGACGGGGTAGTCCGGGCCTGGGCACGGGAGCGGTTCGCTATCCGCGTCA
GGATGGGTGTACGCAGCCCGTCGATGCCGTTTGTGTCCTCCATGTTCTGC
GTGGCCTAGCGAGCGCCAGCGGCCGCTCCTGGCTCATTGCGTTCATGGTG
CCGAAGAGGCCACGCACAAGACAGAGGAGCGGAACGGCATCAACGTGCTG
CGTACACCCATCCTGGACGCGGACAACGAACCGTTCCGGCAATGTGAATT
CTGCAGCGCCACCGCATCGTGCACCGGCTTGGGGCGGTGACAGCAGGGGT
GCTCACCTGGGGCTGGCTTCTTGCTCAGGCAGGGATGCTGGGACTGGATC
CCCCTGCAGCATAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3908634..3909197+

>mRNA_S-ischiensis_contig8.19779.1 ID=mRNA_S-ischiensis_contig8.19779.1|Name=mRNA_S-ischiensis_contig8.19779.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig8:3908634..3909197+ (Schizocladia ischiensis KU_0333)
CACACAGCCTCCTCCCACTCGCAGGGTCCGCCAACTCCCAGCCAACCCCC
CCCCTGGGAGTGGGAGGAGGCTCCCAGCCAACTCCCCCCCTGCCAACTCC
CAGCCAACTCCCAGCCAACTCCCAGCCAACTCCCCCCCAACTCCCAGCCA
ATCCGCCAACTCCCAGCCAACTCCCCCCCTGGGAGTGGGAGGAGGCTGCG
TGACGGGGTAGTCCGGGCCTGGGCACGGGAGCGGTTCGCTATCCGCGTCA
GGATGGGTGTACGCAGCCCGTCGATGCCGTTTGTGTCCTCCATGTTCTGC
GTGGCCTAGCACACAGCCTCCTCCCACTCGCAGGGTCCGCCAACTCCCAG
CCAACCCCCCCCCTGGGAGTGGGAGGAGGCTCCCAGCCAACTCCCCCCCT
GCCAACTCCCAGCCAACTCCCAGCCAACTCCCAGCCAACTCCCCCCCAAC
TCCCAGCCAATCCGCCAACTCCCAGCCAACTCCCCCCCTGGGAGTGGGAG
GAGGCTGCGTGACGGGGTAGTCCGGGCCTGGGCACGGGAGCGGTTCGCTA
TCCGCGTCAGGATGGGTGTACGCAGCCCGTCGATGCCGTTTGTGTCCTCC
ATGTTCTGCGTGGCCTAG
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