mRNA_S-ischiensis_contig8.19770.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19770.1
Unique NamemRNA_S-ischiensis_contig8.19770.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3800563..3803700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1142
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19770.1prot_S-ischiensis_contig8.19770.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3800648..3803287 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.469972-UTR-S-ischiensis_contig8:3800562..38006471622817264.469972-UTR-S-ischiensis_contig8:3800562..3800647Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3800563..3800647 -
1695740979.765559-UTR-S-ischiensis_contig8:3800562..38006471695740979.765559-UTR-S-ischiensis_contig8:3800562..3800647Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3800563..3800647 -
1622817264.5181403-UTR-S-ischiensis_contig8:3803287..38033691622817264.5181403-UTR-S-ischiensis_contig8:3803287..3803369Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3803288..3803369 -
1695740979.8141766-UTR-S-ischiensis_contig8:3803287..38033691695740979.8141766-UTR-S-ischiensis_contig8:3803287..3803369Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3803288..3803369 -
1622817264.528891-UTR-S-ischiensis_contig8:3803577..38037001622817264.528891-UTR-S-ischiensis_contig8:3803577..3803700Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3803578..3803700 -
1695740979.8252196-UTR-S-ischiensis_contig8:3803577..38037001695740979.8252196-UTR-S-ischiensis_contig8:3803577..3803700Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3803578..3803700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.481389-CDS-S-ischiensis_contig8:3800647..38012321622817264.481389-CDS-S-ischiensis_contig8:3800647..3801232Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3800648..3801232 -
1695740979.775237-CDS-S-ischiensis_contig8:3800647..38012321695740979.775237-CDS-S-ischiensis_contig8:3800647..3801232Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3800648..3801232 -
1622817264.49349-CDS-S-ischiensis_contig8:3802642..38027811622817264.49349-CDS-S-ischiensis_contig8:3802642..3802781Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3802643..3802781 -
1695740979.785015-CDS-S-ischiensis_contig8:3802642..38027811695740979.785015-CDS-S-ischiensis_contig8:3802642..3802781Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3802643..3802781 -
1622817264.5044897-CDS-S-ischiensis_contig8:3803159..38032871622817264.5044897-CDS-S-ischiensis_contig8:3803159..3803287Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3803160..3803287 -
1695740979.800931-CDS-S-ischiensis_contig8:3803159..38032871695740979.800931-CDS-S-ischiensis_contig8:3803159..3803287Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3803160..3803287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19770.1

>prot_S-ischiensis_contig8.19770.1 ID=prot_S-ischiensis_contig8.19770.1|Name=mRNA_S-ischiensis_contig8.19770.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=284bp
MDVGRAGRRSQGLPVAQRGTVAVGGAQRAPAGKAGKRKGRHASTGRQATA
APYSCLRAPPTSSFNPPWSPVPGSKQHARAVAHRSTPVGFLPLWPGLTHA
ACMRRGGHGTLSGAFSGLTVAACRPVPSSAVDDLSGALQGLAVAPPARPA
AEVDAELEALLGPAVAPGPVAAGLPAVPAVPPSVAQAPAVPAAQDRDIDC
LAHAMGEVAHQDPQAQAAAAAGGTAAGRRRRTGRTSKAGKPASPERAAKL
IPSLAFPLWRGTCTPRICGAAGWPCGHGSGGAV*
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mRNA from alignment at S-ischiensis_contig8:3800563..3803700-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19770.1 ID=mRNA_S-ischiensis_contig8.19770.1|Name=mRNA_S-ischiensis_contig8.19770.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3138bp|location=Sequence derived from alignment at S-ischiensis_contig8:3800563..3803700- (Schizocladia ischiensis KU_0333)
CCGGCTGCCCCCCCCCCCGGCCCCGGTGCACAGCTGGCCGGGTCCCCCCC
GGGGTGCCAGCGCCAGGAAAGCGGGCAAGGTGCGGGGCGGGAGAGCTGGC
AAGGGGCGGAGGCGGCAGGCCAGGTGAGGCTTAGGGTGTTGGCGGTATGT
TGTGTTTAAGCCTTACAAGTAATCTGCACTTGTACTGTACAGTACGCACG
AAGTACAGTACAGCACAGTATAGTACAGCTCACAGCTCTGCACACGTACG
AGGTACTGTACAGTACAGCACACCACTTAATATTGTGCCCTCCCTGTGCG
TGCTCGTGCACACTCTCTTTCACACCGGCAGGCGGGACAGCGTGGCTCCC
CATAGCTCGTCCAGGGACCCCCTCCCAGTTCAATCCTCCAGCGACATCCT
GGAGTTCAAGTATATGGATGTCGGCCGTGCCGGGCGGCGCTCCCAGGGCC
TCCCCGTGGCCCAGCGCGGCACCGTGGCGGTGGGGGGCGCTCAGCGTGCG
CCCGCCGGGAAGGCTGGCAAGCGGAAGGGGCGGCATGCCAGGTGAGGCTT
GCAATAGCCCTGGTACTTGTACAAGCAGGTGGGAGGCTCTGCCGACGATG
AAATACTGTACGAGTACCACCACTCGCAATGTTGTTTTTACTTGTTCCAT
GAGTTGACGGTGCCTTGTGTTTGAAGCCTTGTTGCGGTAAGCAGTGGCAG
AATATCGATCAATAGATAGTTATCGGGCTCGACAGATTTTGTGGGTGGCG
TTACTGTCTACTGTGGTTGGATTTGGTGCGGGTCAAACTATCGAACATCG
ACTATCGATATATACATATATATATGTAGATCAGTACTGTCGATAAATAG
ATTGATTTGCTTAGATATCACTGGCGGTGAGCCCTACACCCTGTGTGTGC
TCGTGCGTACTCTTTTCAGCACTGGCAGGCAGGCAACGGCAGCTCCTTAC
AGCTGCCTCAGAGCCCCTCCCACCTCCTCCTTCAACCCTCCGTGGTCGCC
GGTACCCGGCTCCAAGCAGCACGCCAGGGCCGTGGCCCATCGCAGCACGC
CCGTCGGGGTGAGTCAATGATGGTCTTGTGTTATATATATATATATGTAC
TCACGTGGTGCTTGCTGTAGTCCCGAGACCATTGACCGTGATGTGGTGTG
ATGTGTGTGCTGGGGCACTGTACTCGAGTAGTGTACTTCGAAGCACATAC
TGCAGTTTGATTTGACATGACGTGTATTACTGTACTGTGTGTACTGCCGT
AGCCCCGAGACCATTGACGACGCGCCTCGGCCGAGACGGAGCTACTGTAG
AGTACGGTTGTAAGTGTCACTGACATGGCTGAGGCGTACAGGAGCTAAAG
AACTGCAGTGCAGTGCAGCAGTACTTCCGGAAGTAGCACATAGCGCCGCT
GTAGTTGTAATACTGTAGAGTATACTGTAGCAAGAACTCTGCCTACTGGA
GAGCTCTACCCAAGAAAGAGCAAGGCGAGTACAGTGGGTGCCTCATGCCA
CCGCAAAGGCAGCAGTGAAGGAACATCGATCAGTAGATAGATATCGGGCT
CGACTGATTTTGTGGGTGGCACTACTACTTCGAAGTAACTACTTGGATAT
AGTGTGGGTCAAACTATCGAAAATCGACTATCGATGGATGTATACTCTTT
GTGGTCACGCGGCTCGTGCGCGGTATACACTGTGGCACTTGCTCACGTCC
TCCGTGCTACTTGCGCCATTACAGGTACGTCGTGATCTCGGTGTTCGTCT
CCGGCCTCGCCCCCGCCTACCCTACCCGCATGCCCCATTGTTAGCACAAG
AGACTCCCCTTCCCCGCCCCTTCCCTTTCCCTGCCCCGCCCCGTTCTTTC
CTTATTTTTGTTTTCTTTTTGCCCTGCGAGGGGAAGAAGGGCTTCGTTGA
GTCCCGTTTTGGGACGAGCCTTTTGGCACGGGGCCTGGAACTCGCTGCTT
GTCTACCACTCAAATATAGATCAGTTCTGTCGATAAATAGGTTGATTTGG
TTAGATATTCCATCTCTGAAAGGCAGGAGCCATGCAGCACTGCAGAGCTC
AGGCCCCGCCGACTCGGAGGCACTGAGGTACTTTGCTTGAGGCATGGTAC
ACAGTAACTTGCTCCGTACTGTACCGTACTGTACTGCACCGTACCGTACT
CCGAGTGCATGTTGTGACAGTACACTATTGCAAAGTATCTCTAGCATGAA
GCACAGTACAGTAGAGTAGAATAAGCAGCCGTTCACGTGACCTGCATGAC
CTGCAGGATGATGCATGATGAGCAGCCACCCGTTCCTTCCCTTCCAGAGC
CACGCCGCAGCAAACCCAAACTGCTGTAGTACGTAAATACTCGAGTACTG
GTACACTAGTTACACTAGTACTTCCAAGTACCTGCTGCCACAGTGCAGCG
TGGCTCACCGCTGCACGCGCTGATACTTCCAAGCATGCCGCCGCCACCGC
CGCCCCCTCCTCTGCTAGTTTTTGCCATTGTGGCCAGGACTCACCCACGC
AGCATGCATGCGGCGCGGGGGCCATGGAACACTATCGGGGGCCTTTAGCG
GGCTGACAGTGGCCGCCTGCAGGCCCGTTCCCTCTTCGGCCGTGGATGAT
TTGTCGGGGGCGCTGCAGGGGCTGGCAGTGGCCCCCCCGGCTCGGCCGGC
GGCAGAAGTGGACGCGGAGCTGGAGGCCCTCCTGGGGCCGGCAGTGGCCC
CCGGGCCCGTTGCCGCGGGGCTGCCAGCGGTGCCGGCGGTCCCACCTTCA
GTGGCGCAGGCGCCTGCGGTGCCCGCCGCCCAAGACCGCGACATCGACTG
CCTGGCGCACGCCATGGGGGAGGTGGCCCACCAGGACCCCCAGGCTCAGG
CGGCGGCAGCGGCGGGCGGGACAGCGGCCGGTAGGAGGAGGAGGACTGGG
AGGACCTCTAAAGCGGGAAAACCCGCTTCTCCTGAGAGGGCGGCCAAGCT
GATCCCGTCTCTCGCATTTCCTCTTTGGCGGGGGACTTGTACCCCGCGAA
TTTGCGGTGCAGCCGGCTGGCCGTGCGGGCATGGCAGCGGTGGTGCTGTA
TGAAGCCTGATTGCCGTGGGGGTGCGGGTGGTGACTGTGCGGGGCTGCTC
CGAGCGCGCGGGATGGCGACTGGGAGAGGGGAACGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3800563..3803700-

>mRNA_S-ischiensis_contig8.19770.1 ID=mRNA_S-ischiensis_contig8.19770.1|Name=mRNA_S-ischiensis_contig8.19770.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1704bp|location=Sequence derived from alignment at S-ischiensis_contig8:3800563..3803700- (Schizocladia ischiensis KU_0333)
ATGGATGTCGGCCGTGCCGGGCGGCGCTCCCAGGGCCTCCCCGTGGCCCA
GCGCGGCACCGTGGCGGTGGGGGGCGCTCAGCGTGCGCCCGCCGGGAAGG
CTGGCAAGCGGAAGGGGCGGCATGCCAGATGGATGTCGGCCGTGCCGGGC
GGCGCTCCCAGGGCCTCCCCGTGGCCCAGCGCGGCACCGTGGCGGTGGGG
GGCGCTCAGCGTGCGCCCGCCGGGAAGGCTGGCAAGCGGAAGGGGCGGCA
TGCCAGCACTGGCAGGCAGGCAACGGCAGCTCCTTACAGCTGCCTCAGAG
CCCCTCCCACCTCCTCCTTCAACCCTCCGTGGTCGCCGGTACCCGGCTCC
AAGCAGCACGCCAGGGCCGTGGCCCATCGCAGCACGCCCGTCGGGCACTG
GCAGGCAGGCAACGGCAGCTCCTTACAGCTGCCTCAGAGCCCCTCCCACC
TCCTCCTTCAACCCTCCGTGGTCGCCGGTACCCGGCTCCAAGCAGCACGC
CAGGGCCGTGGCCCATCGCAGCACGCCCGTCGGGTTTTTGCCATTGTGGC
CAGGACTCACCCACGCAGCATGCATGCGGCGCGGGGGCCATGGAACACTA
TCGGGGGCCTTTAGCGGGCTGACAGTGGCCGCCTGCAGGCCCGTTCCCTC
TTCGGCCGTGGATGATTTGTCGGGGGCGCTGCAGGGGCTGGCAGTGGCCC
CCCCGGCTCGGCCGGCGGCAGAAGTGGACGCGGAGCTGGAGGCCCTCCTG
GGGCCGGCAGTGGCCCCCGGGCCCGTTGCCGCGGGGCTGCCAGCGGTGCC
GGCGGTCCCACCTTCAGTGGCGCAGGCGCCTGCGGTGCCCGCCGCCCAAG
ACCGCGACATCGACTGCCTGGCGCACGCCATGGGGGAGGTGGCCCACCAG
GACCCCCAGGCTCAGGCGGCGGCAGCGGCGGGCGGGACAGCGGCCGGTAG
GAGGAGGAGGACTGGGAGGACCTCTAAAGCGGGAAAACCCGCTTCTCCTG
AGAGGGCGGCCAAGCTGATCCCGTCTCTCGCATTTCCTCTTTGGCGGGGG
ACTTGTACCCCGCGAATTTGCGGTGCAGCCGGCTGGCCGTGCGGGCATGG
CAGCGGTGGTGCTGTATGATTTTTGCCATTGTGGCCAGGACTCACCCACG
CAGCATGCATGCGGCGCGGGGGCCATGGAACACTATCGGGGGCCTTTAGC
GGGCTGACAGTGGCCGCCTGCAGGCCCGTTCCCTCTTCGGCCGTGGATGA
TTTGTCGGGGGCGCTGCAGGGGCTGGCAGTGGCCCCCCCGGCTCGGCCGG
CGGCAGAAGTGGACGCGGAGCTGGAGGCCCTCCTGGGGCCGGCAGTGGCC
CCCGGGCCCGTTGCCGCGGGGCTGCCAGCGGTGCCGGCGGTCCCACCTTC
AGTGGCGCAGGCGCCTGCGGTGCCCGCCGCCCAAGACCGCGACATCGACT
GCCTGGCGCACGCCATGGGGGAGGTGGCCCACCAGGACCCCCAGGCTCAG
GCGGCGGCAGCGGCGGGCGGGACAGCGGCCGGTAGGAGGAGGAGGACTGG
GAGGACCTCTAAAGCGGGAAAACCCGCTTCTCCTGAGAGGGCGGCCAAGC
TGATCCCGTCTCTCGCATTTCCTCTTTGGCGGGGGACTTGTACCCCGCGA
ATTTGCGGTGCAGCCGGCTGGCCGTGCGGGCATGGCAGCGGTGGTGCTGT
ATGA
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