mRNA_S-ischiensis_contig8.19765.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19765.1
Unique NamemRNA_S-ischiensis_contig8.19765.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: D7FSD9_ECTSI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSD9_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 4.660e-87
Identity = 140/166 (84.34%), Postives = 153/166 (92.17%), Query Frame = 3 
Query:  219 AATDLHDDPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEK 716
            +A DL ++P MLIGHGFDIHRL  G +LVIGGV+IPYE GA+AHSDGDV+YHSVVDAILGALGLPDIGQ+FPDNDP WSGADSSIFMEEA+ RM+ERG+RVGNVDVTLILQKPKV DIKP MR+NIVRLLRTS  RVNVKARTHEKVD+VGEGRAMACHVVVLLEK
Sbjct:    2 SAPDL-EEPAMLIGHGFDIHRLVEGKELVIGGVNIPYELGADAHSDGDVIYHSVVDAILGALGLPDIGQLFPDNDPDWSGADSSIFMEEAYRRMDERGFRVGNVDVTLILQKPKVMDIKPLMRDNIVRLLRTSLGRVNVKARTHEKVDSVGEGRAMACHVVVLLEK 166
[Close]
BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: A0A7S2XZX5_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZX5_9STRA)

HSP 1 Score: 273 bits (697), Expect = 2.130e-84
Identity = 136/174 (78.16%), Postives = 149/174 (85.63%), Query Frame = 3 
Query:  198 GAAPTMSAATDLHDDPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEKK 719
            G  PTM          P L+GHGFDIHRL PG  LVIGGV IPYE GAEAHSDGDV+YHSVVDAILGAL LPDIGQ+FPDNDP+W GADSS+FMEEA+ RM+E GY +GNVDVTLILQKPKVKDIKPAM+ENIVRLLRT+P +VNVKARTHEKVD+VGEGR+MACHVVVLL KK
Sbjct:   64 GTTPTM----------PFLVGHGFDIHRLAPGLPLVIGGVTIPYELGAEAHSDGDVIYHSVVDAILGALTLPDIGQLFPDNDPRWKGADSSVFMEEAYRRMDEAGYTIGNVDVTLILQKPKVKDIKPAMKENIVRLLRTTPSQVNVKARTHEKVDSVGEGRSMACHVVVLLMKK 227
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BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: A0A7R9U3H3_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3H3_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.370e-80
Identity = 127/179 (70.95%), Postives = 152/179 (84.92%), Query Frame = 3 
Query:  183 RLPRGGAAPTMSAATDLHDDPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEKK 719
            R+P G     + A  ++ ++P + IGHGFDIHR+ PG KLVIGGV I +E G EAHSDGDV+YHSVVDAILGAL LPDIGQ+FPDNDP+WSGADSSIFM+EA++RM+ RGYR+GNVDVTLILQKPKVKD KP M++NIV LL T+P RVNVKARTHEKVD+VGE RA++CHVV +LE+K
Sbjct:   29 RVPGG-----LKATQEVAEEPLLRIGHGFDIHRMAPGKKLVIGGVTIDFELGVEAHSDGDVIYHSVVDAILGALTLPDIGQLFPDNDPEWSGADSSIFMKEAYKRMDARGYRIGNVDVTLILQKPKVKDFKPLMKDNIVELLHTTPDRVNVKARTHEKVDSVGESRALSCHVVTILERK 202
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BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: A0A835Z8X8_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X8_9STRA)

HSP 1 Score: 251 bits (640), Expect = 6.900e-77
Identity = 122/159 (76.73%), Postives = 137/159 (86.16%), Query Frame = 3 
Query:  246 PMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEKKS 722
            P+ IGHG+DIHRL  G KLVIGGVDIP+EKGAEAHSDGDV+YHSVVDAILGAL +PDIGQ+FPDNDP+WSG+DSSIFMEEA+ RM  RGY +GNVDVTLILQ+PKV+DIKPAM +NI RLL   P RVNVKARTHE VD+VGE RAM CHVV+ L  K 
Sbjct:    2 PVRIGHGYDIHRLAEGKKLVIGGVDIPFEKGAEAHSDGDVIYHSVVDAILGALCMPDIGQLFPDNDPQWSGSDSSIFMEEAYRRMAGRGYEIGNVDVTLILQRPKVRDIKPAMADNIARLLHAPPGRVNVKARTHELVDSVGESRAMECHVVLTLLYKG 160
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BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: A0A7S0SRS3_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRS3_9STRA)

HSP 1 Score: 250 bits (639), Expect = 3.990e-76
Identity = 122/165 (73.94%), Postives = 139/165 (84.24%), Query Frame = 3 
Query:  222 ATDLHDDPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEK 716
            +  L D+P + IGHGFDIHRL  G KLVIGGV IPY  GA+AHSDGD +YH VVDAILGAL LPDIGQIFPDNDPKW GADSSIFM EA+ RM ERGYR+ N+DVTLILQ PKVKDIKP+M+ENIV+LL T+  RVN+KARTHEKVD++GE ++ ACH VVLLEK
Sbjct:   38 SNQLIDEPSIRIGHGFDIHRLIEGTKLVIGGVTIPYHLGADAHSDGDALYHCVVDAILGALNLPDIGQIFPDNDPKWKGADSSIFMIEAYNRMIERGYRISNLDVTLILQSPKVKDIKPSMKENIVKLLHTADNRVNIKARTHEKVDSIGESKSYACHAVVLLEK 202
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BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: A0A7S2WW46_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW46_9STRA)

HSP 1 Score: 250 bits (638), Expect = 9.570e-76
Identity = 123/170 (72.35%), Postives = 139/170 (81.76%), Query Frame = 3 
Query:  213 MSAATDLHDDPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEKKS 722
            MS A     +P + IGHG+DIHRL PG  LVIGGVDI YE G EAHSDGDVV+HSVVDAI GALGLPDIGQ FPD DP+W GA S +FMEEA+ +M  RGY +GNVDVTLILQKPKV DIKP M++NIVRLLRTS  RVNVKARTHEKVD+VGE RA+ CHVV+ LEK++
Sbjct:   51 MSTAPSAETEPLLRIGHGYDIHRLAPGLPLVIGGVDIDYELGTEAHSDGDVVFHSVVDAIFGALGLPDIGQFFPDTDPRWKGASSDVFMEEAYNQMVARGYHIGNVDVTLILQKPKVMDIKPKMKDNIVRLLRTSESRVNVKARTHEKVDSVGECRALECHVVLTLEKQN 220
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BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: A0A0G4H9P7_9ALVE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H9P7_9ALVE)

HSP 1 Score: 239 bits (610), Expect = 1.500e-71
Identity = 114/161 (70.81%), Postives = 131/161 (81.37%), Query Frame = 3 
Query:  237 DDPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEKK 719
            +DP   +GHG+DIHRL PG  L IGG+DIPYEKG EAHSDGDVV+HS+ DAI GAL LPDIGQ FPD DP+W GA S +FMEEAF +M+ERGYR+GN DVTLIL++PKVKD KP M + I  LLR    RVNVKARTHEKVD+VGE RA+ CHVVV+LEKK
Sbjct:   63 EDPQFRVGHGYDIHRLAPGLTLTIGGIDIPYEKGTEAHSDGDVVFHSLCDAIFGALSLPDIGQQFPDTDPRWKGAASCVFMEEAFRQMDERGYRIGNADVTLILERPKVKDFKPKMVDRICELLRAPHSRVNVKARTHEKVDSVGESRALECHVVVVLEKK 223
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BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: A0A0G4FLM8_VITBC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FLM8_VITBC)

HSP 1 Score: 235 bits (600), Expect = 5.270e-70
Identity = 110/160 (68.75%), Postives = 134/160 (83.75%), Query Frame = 3 
Query:  240 DPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEKK 719
            +P M IGHG+DIHRL PG +L +GGV I YEKG EAHSDGDV++HS+ DA+ GAL LPDIGQ FPD DPKW  A S +FME+A+ +MEERGYR+GNVDVTLIL++PKVKD+K  M++NI RL+R  P +VN+KARTHEKVD+VGE RA+ CHVVVLLE+K
Sbjct:   57 EPLMRIGHGYDIHRLAPGLQLTVGGVKIDYEKGTEAHSDGDVIFHSLCDAVFGALALPDIGQQFPDTDPKWKDASSDLFMEDAWRQMEERGYRLGNVDVTLILERPKVKDLKAGMKDNICRLMRVPPSQVNIKARTHEKVDSVGENRAIECHVVVLLERK 216
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BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: A0A7S0GXU7_9EUKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GXU7_9EUKA)

HSP 1 Score: 235 bits (599), Expect = 5.330e-70
Identity = 115/159 (72.33%), Postives = 133/159 (83.65%), Query Frame = 3 
Query:  240 DPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEK 716
            +P M IGHG+DIHRL  G  L IGGV IP+EKG  AHSDGDV+YHS+ DAILGA+G+PDIGQ+FPDNDP+W GA S  FM EA+  M+ERGY++GNVDVTLILQKPKVKDIKP M+ENIV+LL T   RVN+KARTHE VD+VGE RA+ACH VVLLEK
Sbjct:   60 EPAMRIGHGWDIHRLEDGLTLTIGGVVIPFEKGTVAHSDGDVLYHSLTDAILGAIGMPDIGQLFPDNDPQWKGAASHQFMTEAYRLMKERGYQIGNVDVTLILQKPKVKDIKPEMKENIVKLLNTDASRVNIKARTHENVDSVGEVRALACHSVVLLEK 218
[Close]
BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Match: K8YUB0_NANGC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YUB0_NANGC)

HSP 1 Score: 234 bits (596), Expect = 3.020e-69
Identity = 122/183 (66.67%), Postives = 137/183 (74.86%), Query Frame = 3 
Query:  177 ATRLPRGGAAPTMSAATD---LHDDPPMLIGHGFDIHRLGPGNKLVIGGVDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGADSSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRTSPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEK 716
            AT  P    AP MSA ++      DPP  IGHGFDIHRL  G  LVIGGV I +EKG+ AHSDGD +YHSV DAILGA+GLPDIGQ+FPD DPKW GADS+ FM EA   M  RGYR+GNVDVTLILQKPKVKDIKP M+ N+V LL T   RVN+KARTHE VD+VGE R+   HVV+LLEK
Sbjct:   58 ATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFEKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSD9_ECTSI4.660e-8784.342-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A7S2XZX5_9STRA2.130e-8478.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A7R9U3H3_9STRA1.370e-8070.952-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A835Z8X8_9STRA6.900e-7776.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A7S0SRS3_9STRA3.990e-7673.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A7S2WW46_9STRA9.570e-7672.352-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A0G4H9P7_9ALVE1.500e-7170.812-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A0G4FLM8_VITBC5.270e-7068.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A7S0GXU7_9EUKA5.330e-7072.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
K8YUB0_NANGC3.020e-6966.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3753570..3760145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.5
Seed ortholog evalue9.1e-74
Seed eggNOG ortholog2880.D7FSD9
Preferred nameMCS
KEGG rclassRC00002,RC01440
KEGG koko:K01770
KEGG ReactionR05637
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0015994,GO:0015995,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
EggNOG OGs2QS77@2759,COG0245@1
EC4.6.1.12
COG Functional cat.I
BiGG ReactioniRC1080.CRv4_Au5_s12_g3144_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Ec32 orthologEc-25_000990.1
Exons6
Model size1875
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19765.1prot_S-ischiensis_contig8.19765.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3753584..3758995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.4667137-UTR-S-ischiensis_contig8:3753569..37535831622817302.4667137-UTR-S-ischiensis_contig8:3753569..3753583Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3753570..3753583 +
1695741009.8067608-UTR-S-ischiensis_contig8:3753569..37535831695741009.8067608-UTR-S-ischiensis_contig8:3753569..3753583Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3753570..3753583 +
1622817302.5477884-UTR-S-ischiensis_contig8:3758995..37601451622817302.5477884-UTR-S-ischiensis_contig8:3758995..3760145Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3758996..3760145 +
1695741009.9079688-UTR-S-ischiensis_contig8:3758995..37601451695741009.9079688-UTR-S-ischiensis_contig8:3758995..3760145Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3758996..3760145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.4781892-CDS-S-ischiensis_contig8:3753583..37537141622817302.4781892-CDS-S-ischiensis_contig8:3753583..3753714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3753584..3753714 +
1695741009.821582-CDS-S-ischiensis_contig8:3753583..37537141695741009.821582-CDS-S-ischiensis_contig8:3753583..3753714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3753584..3753714 +
1622817302.4889889-CDS-S-ischiensis_contig8:3753818..37539091622817302.4889889-CDS-S-ischiensis_contig8:3753818..3753909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3753819..3753909 +
1695741009.839499-CDS-S-ischiensis_contig8:3753818..37539091695741009.839499-CDS-S-ischiensis_contig8:3753818..3753909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3753819..3753909 +
1622817302.5003436-CDS-S-ischiensis_contig8:3754118..37542781622817302.5003436-CDS-S-ischiensis_contig8:3754118..3754278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3754119..3754278 +
1695741009.8525841-CDS-S-ischiensis_contig8:3754118..37542781695741009.8525841-CDS-S-ischiensis_contig8:3754118..3754278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3754119..3754278 +
1622817302.5139568-CDS-S-ischiensis_contig8:3755181..37552931622817302.5139568-CDS-S-ischiensis_contig8:3755181..3755293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3755182..3755293 +
1695741009.8658772-CDS-S-ischiensis_contig8:3755181..37552931695741009.8658772-CDS-S-ischiensis_contig8:3755181..3755293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3755182..3755293 +
1622817302.5249355-CDS-S-ischiensis_contig8:3757374..37574261622817302.5249355-CDS-S-ischiensis_contig8:3757374..3757426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3757375..3757426 +
1695741009.8795865-CDS-S-ischiensis_contig8:3757374..37574261695741009.8795865-CDS-S-ischiensis_contig8:3757374..3757426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3757375..3757426 +
1622817302.5355656-CDS-S-ischiensis_contig8:3758830..37589951622817302.5355656-CDS-S-ischiensis_contig8:3758830..3758995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3758831..3758995 +
1695741009.89598-CDS-S-ischiensis_contig8:3758830..37589951695741009.89598-CDS-S-ischiensis_contig8:3758830..3758995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3758831..3758995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19765.1

>prot_S-ischiensis_contig8.19765.1 ID=prot_S-ischiensis_contig8.19765.1|Name=mRNA_S-ischiensis_contig8.19765.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=237bp
MLSSWPLLLCLALVAAAAWPSQAFLGVVGIGPGTSATFGQLRSRSAVNPL
RMAPATRLPRGGAAPTMSAATDLHDDPPMLIGHGFDIHRLGPGNKLVIGG
VDIPYEKGAEAHSDGDVVYHSVVDAILGALGLPDIGQIFPDNDPKWSGAD
SSIFMEEAFERMEERGYRVGNVDVTLILQKPKVKDIKPAMRENIVRLLRT
SPRRVNVKARTHEKVDAVGEGRAMACHVVVLLEKKS*
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mRNA from alignment at S-ischiensis_contig8:3753570..3760145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19765.1 ID=mRNA_S-ischiensis_contig8.19765.1|Name=mRNA_S-ischiensis_contig8.19765.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6576bp|location=Sequence derived from alignment at S-ischiensis_contig8:3753570..3760145+ (Schizocladia ischiensis KU_0333)
CATAGACGGGCAGCATGTTGAGCTCATGGCCCTTGCTGTTGTGTCTTGCG
CTGGTTGCGGCCGCGGCATGGCCATCGCAAGCTTTCTTGGGTGTTGTTGG
TATAGGTCCTGGAACCTCGGCCACCTTTGGACAGCTCCGTAGCCGGTACG
TTGGCCACGTCTGCTCAATGCTCTTCAGTTCCTCGGGAAGTGCTCCGTGA
CTCACCCTGTGGCCCGCCACCCCATCCTGCCTGCATCGCAATGTGGCAGG
TCGGCCGTGAACCCTTTGCGAATGGCACCTGCTACGAGACTACCTCGGGG
AGGGGCTGCACCCACCATGTCTGCCGCCACGGACCTCCATGTACGTATTA
GTCGGTCGTGGCACTGCACGCATCATCGCAACCCACCCCACCTCTCGTGG
GCCTCTGTTTTCTGCCACCCAGTGCTTGCTCCATTCCTGCCTCCGAACTC
ATCGTGGAACCTGGACCACTTCTTATACGCTTCTGCTTTGCCGCCCAATT
CCTGCCTGCCCAACAACAACAACTCCCTCCGCTCACTCCCGCTTGCCAGG
ATGATCCTCCGATGCTGATCGGGCACGGGTTTGATATCCACCGCCTGGGC
CCTGGAAACAAGCTCGTGATTGGGGGCGTGGACATCCCTTACGAGAAGGG
AGCGGAGGCGCACTCCGATGGCGACGTGGTGTACCACAGCGTCGTTGATG
CTATCTTGGGTAAGCTCACGCACACGTTGCCCCACCACCCTGCAGCTTCG
CAGCGCAAGGGCGCCGCAAGTGTCTGGCGTACTGTTAGTACGGCAGTGCA
TGGCAGACATTTAGCGTAAGTTGGCCTACTGCAGTGTGAGACTAGTCGTG
TTGGTGGACACCAGAGCTGCGACAGTACGCAAACTCGAGCTCTTGGAATC
GTATCTGGTACTGCAGTACGCTGCAGTGAACGGGCTTCTGGCTCGACGTT
GCATACACGTCGTGCTTGCCGTTGAGCCGTCATTCGGGCATGATCCATTT
GCCGATGCTCTCTCGGAGAGCTCTTGCAATCGGCGATGACCCATTCCTGA
GGTGCGCGTGCCTTGCCTCCGGGAATTGACCCATGTTCGCGTTTCAGCAA
TGACATACAGTACTTTTGAAGCACCGCTGCAGTGCTTCGAGTTGCCCAAT
TCGAAGACCGCAGTATTTGCAGTGCTTCCTGTATCCTCTTTGCTAACAGC
AAGTAGCCTTGGGGTGCCTTTGCAGTCACTCCGATAGCATTGTGCTGGCC
CTGGCTAGAGCTCTACTACTGTTCAGGGTGTGCCCTGCTCGGCACTGTTG
GCCCATATGTTGCCCTGGCTCTAGCAAAGGCCCGTTTTTGACAGCAATAC
ATGGCATCGCCTGTCGTCACACATATTTCTGTTTACCATGACGCATGCAT
GGATGGTCCCTCGAACACTTCGGTTGGCATCACGGGCCGGAAGTTGTCAT
CAGAGCTCAGAGACACCCCCTCCCACCCGCCGGTGCGTGCGTGCATGCAT
GCGCGCGCACGTGTGCGTGTGTGCATGCATGCTGTTGTGCATGCGCGTGT
GTGTGCATGCCGCTGCATCTTTAACGGCGCTTTTGTCATCTTTGGGCGGC
GGGGTCGTCCAGGCGCCCTTGGGCTGCCGGACATCGGGCAGATATTCCCT
GACAACGACCCCAAGTGGTCCGGGGCAGACTCGTCGATTTTCATGGAGGA
GGCGTTTGAGCGGATGGAGGAAAGGTGAGACGCCTCTCACGGGAAGTAGG
AGGCTTTTTGAGCGGGTGAAGGAACAGCGAGTTATTTTCCGCTGTGTGCC
GGCATGCTCCGTCCCGGCCTACTGTAGTTGGTATGCGAGAGTCAATGGCT
AAATAGCTGCTCTGTTGCAAGGCAATCCCCAAGTTTTAACTTTGAGCTGT
CGAGCAAGCACGCAAGGTTGTGTTGCAAGACAAGCCAATGAGTATATATA
TAGCAGTAGAGTAATGGAGTACTCGACTAGCACTCTACATTGCACTCGTA
AACCATTTGCATATACAGTATTGTACTGTGGTTTGTGTTAGATGCCACTG
TGGTGAGCCGAGTGAGGTGTAGTGCATGAAGCAGTGTGGTGTGGTGTGAT
GTGTGCTCTAATTTTCTGTACTGTAGTTTGACATCGCGTCACATCACAGC
CGGTACAGTACTTAGCAAGTATGTTTTGGACACCACGCTGCGAGCCGGGC
GAGGTTGAATACTTAAATCGAGTGGAGACCGGAACGGTGAGGAGCCCTTT
GATTTGAGAGATGACGGGAGAGGCCAGAGACGTTTGACAGTGGATGGAGG
AAACACCGGAGGCCTTGTGAGCGGACGAAGGATAGACGAGACCTTGTGAA
CGGGTACCTGAAGGATAGACAAGAGACCGTGTGAGTGGGCAAAGGACAGA
CAAAAAGGCCTTTGAGCGGATGAAGAAAAGGTGGGCCGTGGACGAAGGAG
CGGTGGGGCATGGGTGGCGAATGGGCCGATTTTGCAGCCATGGCGGACAA
GTCTCGTTCCGTACAGTACTGCTACAGTTTTCTCCCTTCTTGGCGAAGGT
GCACGACGGTCTCGGGGCTGTTTTGGTGAGCACGACCCGGAGACATCCGT
CGCTATCGTAAGGGTGGGTTGCCAGCCGTGATGGAACCTCTAAGGAAATC
AACCTATTTACTTCATATCAACAGTACCGGTCTGTATATCTATTGATAGT
CAATATTCGATAGTTTGACCCACACTAAATCCAAGTACTTCCTTCAAGTA
GTTGGTAGTGCCACCCACCAAATCAGTCGAGCCCGATAACTGTCTACTGA
TCGATATTCAATCACGGGTTGCCAGGTCTCCCGTGGCCCCAACAAGCAGA
ACGCGACGTGCCATGTGCAGTGCTGCTTCCGCGCTACTAGAGCATCCCAT
GTACTTGATGCTTCCTCCTCTCCCCCTCTTTCCTACTTGGGGGAGGAAGT
AAGTAAGCTGACCCGAAGTAAGCTGACCCGAATTTCCGCCTTCCGTCTGG
GACGGGGAGGGTGGTTTAACGGCCTCGATGCTACTACTGTTCCTCTCCCC
CCTCTTCCTTTGCTCATGCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCCC
GTCCACCCCCCCCCCCTCCTCTTCTCCCCTTCCCCACACAAGTTTCCCCC
GGCGAGCTGTAGGGAAGGGCCACTGCTGAGGTCTCTAGCGACGTGGCCCG
CACCTCGCCCCGTGTTGTTCCTGATACTACTACTGTACTGTACACCCTCA
AAGTACTTACTGCAAGCACGGCGCCAACCATAGCGCGTGCACTCCACGAG
TTTCTAGGCTCCAATGCGTAGGTAGCCCCCTGTACGTTGGAATGTGGGCA
CTACAGTACAGTAGTGCAGTGCCAGCATGTTCTTCGAAGCGTAGCCGTCC
CCTGGTTGCTGCTGTCTCGATCCCCGTCCCCTGAACGCCCGCCGCCTCTT
GGTAATATGGGGCGGTGTCGCATGCCCACCCCCGCCCCGCCTGCGCCCGC
ACCCCCAACCACACCATACCACGCCCTGTACAACAAAAAAACACCCCCCA
GCCCCCACCCCCCTCCCTGTTTCTCCTTGTTTTTCTTCCCCCCACCCCCC
CCCCTTTTCTTTCCCCCCCCTCTTTGTTTTTAATTCTTTGATGTGATAGT
CACTATTACGAGAACACTCCATCTCACACATGTGCGATTGTACCTCGTTA
CAATTTGTATGAATCACCCCCCCCCCCCCCCCTTCCCCGGGCGTCTGCGG
GGGCTGGCGCGGTACGTACGCGCCCCTTGCGCTGCCTGGCCGGACAAAAT
CGCAGGGGCTACCGCGTGGGCAACGTGGATGTTACGCTCATCCTGCAGAA
GCCCAAGGTGAGCCACGTGCATACAGTAAAGTACAGTAGCGCTTCCCAAG
CACCTGCAGCAAGTAAGCTGAGGAGGTGCTTGCATTTCACAGAGGTGGGC
GTGAGCCTCGTCCTTCAGACCCCCAAGGTGAGCCCACCGCGTGGAACTCC
TGCACCTACTGTAATTGCTTTGTCCTCTTCCTCCCCTTCCTGCTCCCCCT
CCTCCCCTTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCC
TCTTCCGCCCCCTCCTCCCCCTTCTCCTCCTCCTCCTCCACCTCCTATCC
CCCTCTTCCTCCCCCCCCCCCCCTCCTCCTCCTCCTCCTGCTCCTCCTCC
TCCTCCTCCTCCCCGTCTTCTGCCCACTCCTCCTCCTTCTCCTCCTCCCC
CTCTCCCCCTCCCCTCCTCCTCCCCCTCCTCCCCCTCCTTCCTCCCCCTC
CTCCCCCCCTCCTCCTCCACCTCTTTCTCCTCCTCCTCCTCCTCCTCCGC
CTCCTCCTCCTCCTCCCCCCTCTCCCCCTCCTCCTCCCCCCTCCTCCCCC
CCTCCCCCTCCCCCTCCTCCCCCCTCCTCATCCTCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCACGCCCCCCCTCCCCCGCCTTCCCACCTTGCCGCCC
TCCTCCTCTGCCCTGCCCTCCACTGTCGAGCTCCCCTTGCAGTCCATGAC
ACGGTCCAACCCCCACTTGTTTTCCTTCTCTGGTTGACATGCATAGTTGA
GATCATTGTCCTTTGCAGTCAGTGATGGACGTGCTCCGTGCTACCTACTC
TGTTAACTCTGAAACTGTGTACTCTACAGTCATTCTCCCAACTATCATAA
GCTATGTTTCGGAGAGATTTCGCCCCCCCCCGGGGCTGCATCCCGAATTT
CCCCGAGCTCCGTCGCACCAATTCCCTACAATATTTTCTCGAGCTTTCCC
GTGCGGATCCGACCAGTACAAACAGGGACAACACAGGGCCAGATGCAGGC
CACGTCACTAAAGACCTCACCAGTGGCCCTTCCTTAGCTCGCCAGGGGCA
GGTTGTGTGGGGAAGGGGAGAAAAGGAGGAGGGGGAGGAGGAGGAGGAGG
AGGAGGAGGATGGGGGGGAGGGGGAAGGAAGAGGAAGGAGGATCCCACCA
GTACCCGGCGAGCAATGCCCCCGCGAAGTTTGGCGGGGGGGCAAGATCTT
TCTGTCCGACGATTGATTGGTTGATTGATTATTGTTATTGAGTCTTCTCC
CCCTCCCCACACAAATTTCCCCTGGCGAGCTATAAGGAAGGGCCACTGCT
GAGGTCTCTAGTGACGTGGCCTGCACCTCGCCTCGTGTTGTTCCTGCCAA
TATTGAGTCTGCTGTAGCCTCATCCGTTTTCGCTGCTCCCGCGCCTGGCA
CCGGCTGGCAGGTGAAGGACATCAAGCCGGCCATGAGGGAGAACATTGTG
CGCCTGCTGCGCACGTCGCCCCGGAGGGTGAACGTCAAGGCACGCACGCA
CGAGAAGGTGGACGCGGTGGGGGAGGGCCGCGCCATGGCCTGCCACGTGG
TGGTGCTCCTGGAGAAGAAGAGCTGATGACGAATTAACTTTTTGTACTTG
CGGAAGTGCTTACTTGCTAGAAGAGTTGATCACTGGCAACTGCTTGCCGC
ACACGAGTATTGTAGCGCAAGTAGACCGCGATGTAGCTCTTTGTACTTCC
GGAAGTGCGAACAGGAACAACACAGGGCGAAGTGCAGGCCACGCCACCAA
AGACCTCAGTAATGGCCCTTCCTTATAGCTCGCCAGGGGAAATTTGTGTT
CCGGAAGCACTTACTTCCCTGTTTAGAAAGAATCCCGCGAGCTCCGGCCG
GCCCCGTCCGGAAAAATGGGGCCTCATCAGGAGCCCTCCATTCCCTCGCA
GGGCAGCAAGTCGACTACTGTACGCAGTCGAGGTACTTGTACCCACACAT
TATCTACATACTGCACGTGGAGATGGATATGCGAGTTCCGGGCCCCGTTC
CAAATCGGGACCTTACCGTGGGAGACTCAACCCGTCTTGATACTCGCATG
CTCCTTCCCTTCCCTGGGGAGCTAAGGAAAGGCCACCGTTTAGGTCTTTT
AGTGACGTGGCCCGCACCTCACCCTGCCTGTTGTTCCTGTTCATGCTGTG
GAGTGTACACTACACGCGACGTCCGGCTTTGCGGCCCCGATTATGCGAGG
CCGAATGACGGGACTGTTGTGCATTGTTCCGCCTGGCACACGCAGCCCGT
GCCCTGTTGCCATGTAGACCCTTCAGCACCTGCACCCGTCAACGGTGTAG
TGCCCTCAGCCGCATCCACTGAGGGTTCGTCAGCAGCCGCTCCAGTAACC
ATGGCACAAAATTGCGATCGGTATTTTTGGTGCCCGGGCCGCCCCATGGA
GGACGCATCGGATGACCATGAAATTTTGACACGTGAAAGAGCTCGTACGT
TCATTTGCCCTATAGTTTTCGTATCACATCACATGGACTGAGCAACAGGT
CAATCGATATTCGATACAATATTTGGGCAAAAAAAAACACACTTTTGTGC
CATGGTTGTGCTACAGCAGCTTGGCGTGCCCGTTCGGCAGCTGAGACAGT
TGCCCCCGAGGAGCTGGTGGCCTCATCACCCCCTTCTTCCACCGGCCTCT
CTGGTGGCACTTGCTGCTTTCGCCTGGGTGGAGGGCAACCGGGCGGAGAT
GAGAGAGAGCAGAGGGAGGGCGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3753570..3760145+

>mRNA_S-ischiensis_contig8.19765.1 ID=mRNA_S-ischiensis_contig8.19765.1|Name=mRNA_S-ischiensis_contig8.19765.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1422bp|location=Sequence derived from alignment at S-ischiensis_contig8:3753570..3760145+ (Schizocladia ischiensis KU_0333)
ATGTTGAGCTCATGGCCCTTGCTGTTGTGTCTTGCGCTGGTTGCGGCCGC
GGCATGGCCATCGCAAGCTTTCTTGGGTGTTGTTGGTATAGGTCCTGGAA
CCTCGGCCACCTTTGGACAGCTCCGTAGCCGATGTTGAGCTCATGGCCCT
TGCTGTTGTGTCTTGCGCTGGTTGCGGCCGCGGCATGGCCATCGCAAGCT
TTCTTGGGTGTTGTTGGTATAGGTCCTGGAACCTCGGCCACCTTTGGACA
GCTCCGTAGCCGGTCGGCCGTGAACCCTTTGCGAATGGCACCTGCTACGA
GACTACCTCGGGGAGGGGCTGCACCCACCATGTCTGCCGCCACGGACCTC
CATGTCGGCCGTGAACCCTTTGCGAATGGCACCTGCTACGAGACTACCTC
GGGGAGGGGCTGCACCCACCATGTCTGCCGCCACGGACCTCCATGATGAT
CCTCCGATGCTGATCGGGCACGGGTTTGATATCCACCGCCTGGGCCCTGG
AAACAAGCTCGTGATTGGGGGCGTGGACATCCCTTACGAGAAGGGAGCGG
AGGCGCACTCCGATGGCGACGTGGTGTACCACAGCGTCGTTGATGCTATC
TTGGGATGATCCTCCGATGCTGATCGGGCACGGGTTTGATATCCACCGCC
TGGGCCCTGGAAACAAGCTCGTGATTGGGGGCGTGGACATCCCTTACGAG
AAGGGAGCGGAGGCGCACTCCGATGGCGACGTGGTGTACCACAGCGTCGT
TGATGCTATCTTGGGCGCCCTTGGGCTGCCGGACATCGGGCAGATATTCC
CTGACAACGACCCCAAGTGGTCCGGGGCAGACTCGTCGATTTTCATGGAG
GAGGCGTTTGAGCGGATGGAGGAAAGGCGCCCTTGGGCTGCCGGACATCG
GGCAGATATTCCCTGACAACGACCCCAAGTGGTCCGGGGCAGACTCGTCG
ATTTTCATGGAGGAGGCGTTTGAGCGGATGGAGGAAAGGGGCTACCGCGT
GGGCAACGTGGATGTTACGCTCATCCTGCAGAAGCCCAAGGGGCTACCGC
GTGGGCAACGTGGATGTTACGCTCATCCTGCAGAAGCCCAAGGTGAAGGA
CATCAAGCCGGCCATGAGGGAGAACATTGTGCGCCTGCTGCGCACGTCGC
CCCGGAGGGTGAACGTCAAGGCACGCACGCACGAGAAGGTGGACGCGGTG
GGGGAGGGCCGCGCCATGGCCTGCCACGTGGTGGTGCTCCTGGAGAAGAA
GAGCTGAGTGAAGGACATCAAGCCGGCCATGAGGGAGAACATTGTGCGCC
TGCTGCGCACGTCGCCCCGGAGGGTGAACGTCAAGGCACGCACGCACGAG
AAGGTGGACGCGGTGGGGGAGGGCCGCGCCATGGCCTGCCACGTGGTGGT
GCTCCTGGAGAAGAAGAGCTGA
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