mRNA_S-ischiensis_contig8.19762.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19762.1
Unique NamemRNA_S-ischiensis_contig8.19762.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3736576..3738944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size380
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.3230917-CDS-S-ischiensis_contig8:3736575..37368291622817302.3230917-CDS-S-ischiensis_contig8:3736575..3736829Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3736576..3736829 -
1695741009.680716-CDS-S-ischiensis_contig8:3736575..37368291695741009.680716-CDS-S-ischiensis_contig8:3736575..3736829Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3736576..3736829 -
1622817302.3342667-CDS-S-ischiensis_contig8:3738820..37389441622817302.3342667-CDS-S-ischiensis_contig8:3738820..3738944Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3738821..3738944 -
1695741009.6946955-CDS-S-ischiensis_contig8:3738820..37389441695741009.6946955-CDS-S-ischiensis_contig8:3738820..3738944Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3738821..3738944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19762.1prot_S-ischiensis_contig8.19762.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3736576..3738944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19762.1

>prot_S-ischiensis_contig8.19762.1 ID=prot_S-ischiensis_contig8.19762.1|Name=mRNA_S-ischiensis_contig8.19762.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
RVITHRLPVAYSAGDFLPTVDADALAVLVAKEAVLRAASGADALPSSKQP
QSGGGRGVDHDAQLSVDRVLAQTSRKYRELCRRRPHSNSGQQHLPRRQQQ
QQQQQGAYGRGDQGRVSAAAGGGGSV
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mRNA from alignment at S-ischiensis_contig8:3736576..3738944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19762.1 ID=mRNA_S-ischiensis_contig8.19762.1|Name=mRNA_S-ischiensis_contig8.19762.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2369bp|location=Sequence derived from alignment at S-ischiensis_contig8:3736576..3738944- (Schizocladia ischiensis KU_0333)
CGGGTGATAACACACCGGCTTCCGGTGGCGTACAGCGCGGGGGATTTTCT
GCCCACCGTGGACGCGGATGCCCTGGCGGTGTTGGTGGCCAAGGAGGCGG
TGCTGAGGGCCGCCAGCGGTGCAGGTGGGCGTGGTTGAATCATATATATT
GTAGCGATTGTTTTCTTCTTGCCCTGCGAGGGAAGGAAGGGCTTGGTTGA
GTCCTGTTTTGGGACGAGCCTCTTGGCACGGGGCCTGGCACGGGGCCTGG
CACTCACCGCTTATCTACCACTCAAATATACTTCGAAGTATTGTAACGAC
GTACAATCGCACGTGTGTGAGATTGAGTGTTCTCGTATTAGTGGTTGTCC
CATTTAAGAATTGCGTGTTCTCGTGTCAGTGACTATCACATCAAAGCATC
AAAGAACTAAACACAAAGAGAGGATGGGTTGGGTTGGGTTGATTCGGTGG
TTGCTTCGTTTTCCTTTCCTGTCGTTGTGTGTGTGTGTGTGTGTGTGTGT
GTTTCCGCATGCCCCTACTTGACTCCGGGGATGCGTTGTATATTGCTAGT
AGTAGTTCCATACTTGCCAAGTACTTCCGGAGATACTTCGAAGTATGCTT
GTATACTTGCAAGTGTTGATTGTCTGCACTGATTGCTGAAAGGTACTGGA
GTGTCATCATCCGACGATGCCAATGCTTTTGTTGGTTTGGTTGGGGATGC
CCCCCTCCTCCCACCCCCGGTGGCTCTACCACCAGCGTGGGAGGGCGGGT
TTCTCCTTCTCGGTCGTGGGGCGCATGATGTGATGCGATATGATGCGCTG
TGATGAGATGAGATGTGATGTGATGCGACGTGATGTGATGTGATGTGATG
TGATGCGATGTGATGAGATGTGACGTGCACACAAACTCATATAGTTTGTA
GCGCATGATGTGATGTGATGTGATGCGATGCCATTCGATGTCCTCTTCGT
TCGCATAACGTTACTACGCCGCATCACCGGCGGCCCCGACTTTGAACTTC
CCTTTGCTCGCAAGGCAGCTCTAAGCTTGCAGCAGGGAGAGGAGGATGAG
GGGGAGGGAGGGGAAGGGAGGAGGAGGAGGAGGAGGGGGGGAGGAGGAGA
GGAGGTGATTCACATAGATTTGGACCGGCTCTCCCCGGCTGTCCAGTGGG
CTCGTGCCCCCTTTGCACACGACGGCGTGACCACATTGCGTAGCCACGGG
TGTTGGGTATGCGTCCTTCTGGTGCTGGCCACACCATTGTGACGTTTGCT
TTGTGCTATTGGGTTGGCTCTTGTGGTGTGGTCACGAGGTTCGTGCGCGG
TACACATTGCGGCACTTGCTCACGCCTTCTCTTGTCGCACTCGCCCAGGT
ACGTCGTGATCTCGGTGTTCGTGTGCAGCTTCGCCCCTGCCTGCCCCACC
CGCATGCCCTACTGTGAGCACAAGAGACTTCCCCGCGCCTCTTCCCTTTC
CTCATCACCCCGCCCATTTCCTTCTATATTTTCTGTTTTTGCTTGCCCTG
CGAGGGGAAGAAGGGAGTCGTTGAGTCCCGCTTCGGGACGAGCCTTTTGG
CACGGGGCCTGGAACTCGCCGCTTGTCTGCCACTCAAAATAGCGAGTAGG
TACCATAGATGGGTATCTTGGATCTCCCCCCGCCGTGTCCGGGCACGGCG
AGGGAACCCCCTCTCCCGCTAGGCCTAGGTCTCGCAGGGGAGGGGGTCCC
TCCACCCGGACTCTCACGAGTCCGGGATGGGGGGGGTATGGACTTGGCCG
CCCCTCCGCCTCTGGCGGGGGGGTGGCCACCCCCTCCCACCCTGGCTCTG
CCAGGGGAGGGAGGGGACCTGCTCCGTCTCGAACGAGGCACGGGGTCAAT
GGTCTCGGGACTACGGCAAGCACCACGTGAGTACATATATATACAATAGA
TTGAAACGAGGTACAATCGCACATGTGTGAGATTGAGTGTTCTCGTATTA
GTGGTTATCCCATTTAAAAGTTGAGTGTTCTCGCACTAGTGGTTATCGCA
TCAAAGAATTAAAAGGAGGAGCAAGAGGTACGTCAGCTGCGGTACGCAAA
CTCACGAGTACCCCACCCCCCCGCCCCACCGTTCGCTCGCCAACACTGTA
CCATCCCACCACCAGACGCCCTCCCGAGCAGCAAGCAGCCGCAGTCGGGG
GGGGGCAGGGGGGTCGACCACGACGCGCAGCTATCCGTGGACCGCGTCCT
CGCCCAAACCTCCCGCAAATACCGGGAGCTGTGCCGGCGCCGCCCCCATA
GCAACAGCGGGCAGCAGCATTTGCCGCGGCGGCAGCAGCAGCAGCAGCAG
CAGCAGGGTGCCTACGGCCGCGGGGACCAGGGCCGCGTGAGCGCCGCGGC
CGGTGGTGGTGGGAGCGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3736576..3738944-

>mRNA_S-ischiensis_contig8.19762.1 ID=mRNA_S-ischiensis_contig8.19762.1|Name=mRNA_S-ischiensis_contig8.19762.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig8:3736576..3738944- (Schizocladia ischiensis KU_0333)
CGGGTGATAACACACCGGCTTCCGGTGGCGTACAGCGCGGGGGATTTTCT
GCCCACCGTGGACGCGGATGCCCTGGCGGTGTTGGTGGCCAAGGAGGCGG
TGCTGAGGGCCGCCAGCGGTGCAGCGGGTGATAACACACCGGCTTCCGGT
GGCGTACAGCGCGGGGGATTTTCTGCCCACCGTGGACGCGGATGCCCTGG
CGGTGTTGGTGGCCAAGGAGGCGGTGCTGAGGGCCGCCAGCGGTGCAGAC
GCCCTCCCGAGCAGCAAGCAGCCGCAGTCGGGGGGGGGCAGGGGGGTCGA
CCACGACGCGCAGCTATCCGTGGACCGCGTCCTCGCCCAAACCTCCCGCA
AATACCGGGAGCTGTGCCGGCGCCGCCCCCATAGCAACAGCGGGCAGCAG
CATTTGCCGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGGGTGCCTACGG
CCGCGGGGACCAGGGCCGCGTGAGCGCCGCGGCCGGTGGTGGTGGGAGCG
TGACGCCCTCCCGAGCAGCAAGCAGCCGCAGTCGGGGGGGGGCAGGGGGG
TCGACCACGACGCGCAGCTATCCGTGGACCGCGTCCTCGCCCAAACCTCC
CGCAAATACCGGGAGCTGTGCCGGCGCCGCCCCCATAGCAACAGCGGGCA
GCAGCATTTGCCGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGGGTGCCT
ACGGCCGCGGGGACCAGGGCCGCGTGAGCGCCGCGGCCGGTGGTGGTGGG
AGCGTG
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