mRNA_S-ischiensis_contig8.19761.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19761.1
Unique NamemRNA_S-ischiensis_contig8.19761.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A6H5L550_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L550_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.250e-23
Identity = 49/74 (66.22%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   43 PEALAFPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPSA 264
            PE   FP ELG LP QLFHLRRGPLLGPLLQN+DD LCLR LFLRG   +CLRM+ P L+S +AA+ L  L +A
Sbjct:  164 PEDAVFPRELGRLPLQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSLVSLKAAEALACLTAA 237
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BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A2G5D320_AQUCA (Protein transport protein SEC23 n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5D320_AQUCA)

HSP 1 Score: 63.5 bits (153), Expect = 1.690e-9
Identity = 33/68 (48.53%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   58 FPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPS 261
            FP EL  LP  LFHLRRGPLLG ++ + D+   LR LFL   F   LRMV P  L  R     + LP+
Sbjct:  676 FPKELSSLPENLFHLRRGPLLGSIVGHEDERSVLRNLFLNSSFDLSLRMVAPRCLMHREGGTFEELPA 743
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BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A7J7NYS4_9MAGN (Protein transport protein SEC23 n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NYS4_9MAGN)

HSP 1 Score: 63.2 bits (152), Expect = 2.310e-9
Identity = 33/68 (48.53%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   58 FPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPS 261
            FP EL  LP  LFHLRRGPLLG ++ + D+   LR LFL   F   LRMV P  L  R     + LP+
Sbjct:  653 FPKELSSLPENLFHLRRGPLLGNIVGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPA 720
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BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A835IKP0_9MAGN (Protein transport protein SEC23 n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IKP0_9MAGN)

HSP 1 Score: 62.8 bits (151), Expect = 3.150e-9
Identity = 33/68 (48.53%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   58 FPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPS 261
            FP EL  LP  LFHLRRGPLLG ++ + D+   LR LFL   F   LRMV P  L  R     + LP+
Sbjct:  667 FPKELSLLPENLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPA 734
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BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A1U8B4K5_NELNU (Protein transport protein SEC23 n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8B4K5_NELNU)

HSP 1 Score: 62.8 bits (151), Expect = 3.160e-9
Identity = 33/68 (48.53%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   58 FPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPS 261
            FP EL  LP  LFHLRRGPLLG ++ + D+   LR LFL   F   LRMV P  L  R     + LP+
Sbjct:  676 FPKELSSLPENLFHLRRGPLLGCIVGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPA 743
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BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: W1PM81_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PM81_AMBTC)

HSP 1 Score: 62.8 bits (151), Expect = 3.170e-9
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:   31 LPAGPEALAFPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPS 261
            +P   +   FP EL  LP  LFHLRRGPLLG ++ + D+   LR +FL   F   LRM+ P  L  R     + LP+
Sbjct:  750 VPGKSKLHQFPKELSTLPENLFHLRRGPLLGSIIGHEDERSVLRNIFLNASFDLSLRMIAPRCLMHREGGTFEELPA 826
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BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A7S0UFX6_HEMAN (Protein transport protein SEC23 n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UFX6_HEMAN)

HSP 1 Score: 62.4 bits (150), Expect = 3.650e-9
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   10 WGEGGLVLPAGPEALAFPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLL 222
            WG+   V  +G      P +L  LP   +HL  GPLLGP+L +ADD   +R LFLR G  D +R++ P LL
Sbjct:  146 WGDQVKVTASG-RVNVVPAQLARLPHLTYHLLHGPLLGPILNHADDYSLIRSLFLRSGVTDSVRILAPTLL 215
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BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A1D1XSF6_9ARAE (Protein transport protein SEC23 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XSF6_9ARAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.230e-9
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:   22 GLVLPAGPEALAFPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPS 261
            G  LP+  +   FP EL  +P  LFHLRRGPLLG ++ + D+   LR LFL   F   LRM+ P  L  R     + LP+
Sbjct:  513 GHQLPSS-KLFRFPKELSPIPENLFHLRRGPLLGSIIGHEDERSVLRNLFLHASFDLSLRMLAPRCLMHREGGTFEELPA 591
[Close]
BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A835D5A4_9MAGN (Protein transport protein SEC23 n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D5A4_9MAGN)

HSP 1 Score: 62.4 bits (150), Expect = 4.310e-9
Identity = 33/68 (48.53%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   58 FPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPS 261
            FP EL  LP  LFHLRRGPLLG ++ + D+   LR LFL   F   LRMV P  L  R     + LP+
Sbjct:  676 FPKELSLLPENLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHRDGGTFEELPA 743
[Close]
BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Match: A0A6I9QV62_ELAGV (Protein transport protein SEC23 n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QV62_ELAGV)

HSP 1 Score: 62.0 bits (149), Expect = 5.880e-9
Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   58 FPPELGHLPRQLFHLRRGPLLGPLLQNADDTLCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPS 261
            FP EL  LP  LFHLRRGPLLG ++ + D+   LR LFL   F   LRM+ P  L  R     + LP+
Sbjct:  674 FPKELSSLPENLFHLRRGPLLGNIVGHEDERSVLRNLFLHASFDLSLRMLAPRCLMHREGGTFEELPA 741
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5L550_9PHAE5.250e-2366.22Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A2G5D320_AQUCA1.690e-948.53Protein transport protein SEC23 n=2 Tax=Thalictroi... [more]
A0A7J7NYS4_9MAGN2.310e-948.53Protein transport protein SEC23 n=1 Tax=Kingdonia ... [more]
A0A835IKP0_9MAGN3.150e-948.53Protein transport protein SEC23 n=1 Tax=Coptis chi... [more]
A0A1U8B4K5_NELNU3.160e-948.53Protein transport protein SEC23 n=3 Tax=Nelumbo nu... [more]
W1PM81_AMBTC3.170e-941.56Uncharacterized protein n=1 Tax=Amborella trichopo... [more]
A0A7S0UFX6_HEMAN3.650e-943.66Protein transport protein SEC23 n=2 Tax=Hemiselmis... [more]
A0A1D1XSF6_9ARAE4.230e-942.50Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A835D5A4_9MAGN4.310e-948.53Protein transport protein SEC23 n=1 Tax=Tetracentr... [more]
A0A6I9QV62_ELAGV5.880e-947.06Protein transport protein SEC23 n=2 Tax=Arecaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3734821..3736512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog3218.PP1S196_14V6.1
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
EggNOG free text desc.transport) protein
EggNOG OGs37NTS@33090,3GEAK@35493,COG5047@1,KOG1986@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.2766383-CDS-S-ischiensis_contig8:3734821..37350491622817302.2766383-CDS-S-ischiensis_contig8:3734821..3735049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3734822..3735049 -
1695741009.6407678-CDS-S-ischiensis_contig8:3734821..37350491695741009.6407678-CDS-S-ischiensis_contig8:3734821..3735049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3734822..3735049 -
1622817302.2882423-CDS-S-ischiensis_contig8:3736422..37365121622817302.2882423-CDS-S-ischiensis_contig8:3736422..3736512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3736423..3736512 -
1695741009.6603456-CDS-S-ischiensis_contig8:3736422..37365121695741009.6603456-CDS-S-ischiensis_contig8:3736422..3736512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3736423..3736512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19761.1prot_S-ischiensis_contig8.19761.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3734822..3736512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19761.1

>prot_S-ischiensis_contig8.19761.1 ID=prot_S-ischiensis_contig8.19761.1|Name=mRNA_S-ischiensis_contig8.19761.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
SGPWGEGGLVLPAGPEALAFPPELGHLPRQLFHLRRGPLLGPLLQNADDT
LCLRQLFLRGGFRDCLRMVTPVLLSARAADILQSLPSAAVPPPAAEAAAE
SSGALP
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mRNA from alignment at S-ischiensis_contig8:3734821..3736512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19761.1 ID=mRNA_S-ischiensis_contig8.19761.1|Name=mRNA_S-ischiensis_contig8.19761.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1692bp|location=Sequence derived from alignment at S-ischiensis_contig8:3734821..3736512- (Schizocladia ischiensis KU_0333)
TCGGGCCCGTGGGGGGAGGGAGGGTTGGTTCTGCCCGCTGGGCCCGAGGC
GTTGGCCTTCCCGCCTGAGCTGGGGCACCTGCCTCGCCAGGTGAGGGTTG
GGTGTGATTCATACTGCGTACCGCAATCGTCGGAGAGATCTTGCCCCCCC
ATTCCAATTTTCAGGATAACTTTTCTCGCCGAATACTGGTCGGCTTCGCG
CAGGAAAACTCGGGAAATTTTCCTCAGGACCTGGGGGAACTTTCCGAGGG
TTTTCGGGACAATTCAGGACCCTCCCGGCTAGAAATATTCCGCCGAAAAT
TGGCCCGTGGGGGCGAAATCTCTCCGACGATTACGGTACTTGGTATAAAC
TCGTTTGCGGCTTCGCCCCCGCATGCCCTACCCACTGTGAGCACAAGAGA
CTCGCTTTCCCCGTCCCTTTCCGTATTTATTTTTTATTTTCTTCTTGCCT
TGCGAGGGAAGGAAGGGCTTCGTTGAGTCCTGTTTTGGGACGAGCCTTTT
GGCACGGGGCCTGGAACTCGCCGCTTATCTAGCCACTCAAATAAACTTCT
ACAGGTACGTCCCGCAACGCGGCACGAGAGAGACCCCCTGCACTACCCCT
GCGGTGCCCCTCTTTGTGGCTTATTTGAATTATTTTTGTGCCCTGCGGGT
GAAAAGAAGGGCTTCTGGTGAGGTCCCCACCTTGAGTTGTGTGGACGGGG
CCCGAAATCGGCATGCCATCTCAATAATTTGAAAATTGCAACGAGGTACA
ATCGCACGTGTGTGAGATTGAGAGCGTGAGGGTTGGGTGGTTGGGTGACT
CGCGAGTCTGTTTTTGGCTCCCACGTGATTTCATTTGAGGTCCTTACGCC
GCTTTGGGAAGTGCACCAGTAGAGTACAGCAGTCTCCTGACAGCTCTGTG
GCCTGCCTCCACCAATTGCCACCACTCACCAACCTGCCCACCCGCCCGCC
CGCCCAGGGTTGGCACTTAGAGGTTAGTTGGGGCCTAATTAGCCTTCAGT
TTAGGTCTAATTATCCCCAATTGCCTCTACTGTAATTAAGGGCCTAAAAG
GGCAACACTTAGGGGTTAAGTGCCAACCCTGCGCCTGCCCGCCCGCCCGC
GCACACACACGCTTGGGCCTGCTTTGCAGTGATGGAATATCTAAGCAAAT
CAACCTATATATCGACAGTACTGATCTATTTTGAGTGGTAGACGAGCGGC
GAGTGCCAGGCCCCGTGCCAAACGGCTCGTCCCAAAACAGGACTCAACGA
AGCCCTTCTTCCCCTCGCAAAGAAAAAGATGAAGGAAATATATCTATCTA
TAGTCGATATTTGATAGTTTTGACCCACAGTACAGTATATCCAAGTAGTT
AGCAACGACACCGACAAAATCAGTCGAGCCCGATAACTATCTGCTGATGG
ATATTCCATCACTGCCGACCGCCCGCCCACCCACGTGGGCTGTTGTTCTT
TTTTTGTCTCCAGCTCTTCCACCTCCGGAGGGGGCCGCTCCTGGGGCCCC
TGCTGCAGAACGCCGACGACACGCTGTGCCTGCGCCAGCTCTTCCTCCGC
GGCGGGTTCCGGGACTGCCTGCGCATGGTGACCCCGGTCCTCCTCTCCGC
CCGAGCGGCCGACATTCTCCAATCCCTCCCCTCCGCCGCCGTGCCGCCGC
CGGCGGCGGAGGCGGCAGCGGAGTCGAGCGGAGCGCTCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3734821..3736512-

>mRNA_S-ischiensis_contig8.19761.1 ID=mRNA_S-ischiensis_contig8.19761.1|Name=mRNA_S-ischiensis_contig8.19761.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig8:3734821..3736512- (Schizocladia ischiensis KU_0333)
TCGGGCCCGTGGGGGGAGGGAGGGTTGGTTCTGCCCGCTGGGCCCGAGGC
GTTGGCCTTCCCGCCTGAGCTGGGGCACCTGCCTCGCCAGTCGGGCCCGT
GGGGGGAGGGAGGGTTGGTTCTGCCCGCTGGGCCCGAGGCGTTGGCCTTC
CCGCCTGAGCTGGGGCACCTGCCTCGCCAGCTCTTCCACCTCCGGAGGGG
GCCGCTCCTGGGGCCCCTGCTGCAGAACGCCGACGACACGCTGTGCCTGC
GCCAGCTCTTCCTCCGCGGCGGGTTCCGGGACTGCCTGCGCATGGTGACC
CCGGTCCTCCTCTCCGCCCGAGCGGCCGACATTCTCCAATCCCTCCCCTC
CGCCGCCGTGCCGCCGCCGGCGGCGGAGGCGGCAGCGGAGTCGAGCGGAG
CGCTCCCCCTCTTCCACCTCCGGAGGGGGCCGCTCCTGGGGCCCCTGCTG
CAGAACGCCGACGACACGCTGTGCCTGCGCCAGCTCTTCCTCCGCGGCGG
GTTCCGGGACTGCCTGCGCATGGTGACCCCGGTCCTCCTCTCCGCCCGAG
CGGCCGACATTCTCCAATCCCTCCCCTCCGCCGCCGTGCCGCCGCCGGCG
GCGGAGGCGGCAGCGGAGTCGAGCGGAGCGCTCCCC
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