mRNA_S-ischiensis_contig8.19755.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19755.1
Unique NamemRNA_S-ischiensis_contig8.19755.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: D8LGL6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL6_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.020e-42
Identity = 70/109 (64.22%), Postives = 79/109 (72.48%), Query Frame = 1
Query:   31 LVASSARQAVRGAHGAPQPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRRGETLPPTAFDPRTLFK 357
            + +++ARQ  RG  G PQPPFARN     +LDENHEL+WDDGVAPET +DFDAPH+  +E   WW GG  FF GMLGL  LSD ESKR AV R  TLP TAFDPR LFK
Sbjct:    1 MTSTAARQVARGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFK 109          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: A0A835ZFI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.970e-28
Identity = 50/92 (54.35%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   85 PPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRRGETLPPTAFDPRTLFKG 360
            PP AR   PT RL E  EL+WDD VAPE CLDFDAPH+   +G  WWLGG  FF  +  +  LS  E +R A+ R  T+PP AFDP  LF G
Sbjct:   32 PPMARQPRPTQRLHEEQELMWDDSVAPELCLDFDAPHISRTQGLLWWLGGLGFFAAVFNIVKLSYPEGRREALPRTATMPPAAFDPVDLFTG 123          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: A0A7S2RL45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL45_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.350e-26
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   79 PQPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRRGETLP 324
            P+PPFAR LAPT  L E HELVWDDGVAPE CLDFDAP+V   +G R +LGGF FFG +  L   S   +KRLAV + ET P
Sbjct:   41 PRPPFARALAPTEPLHEEHELVWDDGVAPEPCLDFDAPYVSAMQGLRMFLGGFLFFGTLFTLVGFSAPTAKRLAVPQAETYP 122          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: A0A6V1PJS4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PJS4_HETAK)

HSP 1 Score: 103 bits (258), Expect = 8.000e-26
Identity = 56/107 (52.34%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    7 LRHALRRSLVASSA-RQAVRGAHGAPQPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRRGETLP 324
            LRH  R   VAS A R +V    G    PFAR +AP S+L E HELVWDDGVA E CLDFD P VP  +G  W +GGF FFG ++GL  LSD  +K     R   LP
Sbjct:    6 LRHVARACTVASRAGRLSVLRGGGVGDRPFARTIAPVSKLHEEHELVWDDGVAAEACLDFDVPEVPSHKGLAWLMGGFGFFGTVMGLVSLSDPAAKCTTAPRSTVLP 112          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: A0A7S2P129_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P129_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.420e-25
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   79 PQPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRR 309
            P PPFARNLAPT++L E+HELVWDDGVAPE  +DFD+ H+   EG  WWLGG  FF G+       D ESK  AV R
Sbjct:   33 PTPPFARNLAPTTKLVEDHELVWDDGVAPELTIDFDSQHISTGEGLAWWLGGLGFFTGLFQFCKTIDMESKNPAVNR 109          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: A0A6U3R2X0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3R2X0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.200e-24
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   82 QPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRRGETLP 324
            +PPF R LAP   L E HELVWDDGVA ETC+DFDAPH+  +EG  WW+GGF FF G+  +  L D +++     RG T+P
Sbjct:   44 RPPFIRTLAPQGSLHEEHELVWDDGVAAETCIDFDAPHISSSEGFAWWIGGFLFFLGVGTVALLRDPDAQNPTTPRGPTMP 124          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: A0A7R9ZHV7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHV7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.530e-24
Identity = 54/103 (52.43%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    4 ALRHALRRSLVAS-SARQAVRGAHGAPQPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRR 309
            AL   LRRS+VA+ S + ++RG +  P PPFAR  APT +L EN++ VWDDGVAPET LDFD  H+   EG  WWLGG  FF  +      +D ESK  AV R
Sbjct:   29 ALAPLLRRSVVATRSTQSSLRGDYTPPLPPFARIPAPTEKLVENNDAVWDDGVAPETALDFDCQHISSEEGLAWWLGGLGFFFSVYQFVKWTDPESKNPAVNR 131          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: K8YRF0_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRF0_NANGC)

HSP 1 Score: 97.4 bits (241), Expect = 3.850e-23
Identity = 51/101 (50.50%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   40 SSARQAVRGAHGA------PQPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRRGETLP 324
            S  R AVR   GA      P  PF R   P   L E HEL+WDD VA E C+DFDA  VP  E  RWWLGGF FF G+LGL  L+D  S    V + ET+P
Sbjct:   25 SFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREAFRWWLGGFGFFFGLLGLVALTDPASVNPCVNKAETMP 125          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: A0A662XNS9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNS9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.830e-22
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 ALRHALRRSLVASSARQAV--RGAHG--APQPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRRGETLP 324
            AL HALR  + ++  RQA+  R  HG   P PPFAR  AP+  L E  ELVW+DGVAPET +DFDAPH+P  +  R WL     F  ++G+  + + +S R A +RG  LP
Sbjct:    5 ALSHALRGGISSTVRRQAIVTRSGHGHRPPPPPFARIAAPSQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLYAMGAFATLMGVVTVYNPDSWRQAAKRGNHLP 115          
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Match: D0P109_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P109_PHYIT)

HSP 1 Score: 93.2 bits (230), Expect = 1.170e-21
Identity = 54/110 (49.09%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    7 LRHALRRSLVASSARQAV--RG--AHGAPQPPFARNLAPTSRLDENHELVWDDGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLAVRRGETLP 324
            L HALR  L  +  RQA+  RG  AH  P PPFAR   P   L E  ELVW+DGVAPET +DFDAPH+P  +  R WL G   F  ++G+  L + +S R A +RG  LP
Sbjct:    6 LSHALRGGLSVNVRRQALATRGNHAHRPPPPPFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRQWLYGLGGFATLMGVVTLYNPDSWRQASKRGNHLP 115          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGL6_ECTSI2.020e-4264.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZFI9_9STRA2.970e-2854.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RL45_9STRA2.350e-2662.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1PJS4_HETAK8.000e-2652.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2P129_9STRA4.420e-2559.74Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6U3R2X0_9STRA1.200e-2454.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9ZHV7_9STRA2.530e-2452.43Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
K8YRF0_NANGC3.850e-2350.50Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A662XNS9_9STRA5.830e-2246.85Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
D0P109_PHYIT1.170e-2149.09Uncharacterized protein n=2 Tax=Phytophthora infes... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3695721..3696551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue4.6e-33
Seed eggNOG ortholog2880.D8LGL6
EggNOG OGs2CYNQ@1,2S5CD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_002670.1
Exons2
Model size423
Cds size423
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817301.8787892-CDS-S-ischiensis_contig8:3695720..36958401622817301.8787892-CDS-S-ischiensis_contig8:3695720..3695840Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3695721..3695840 +
1695741009.3011801-CDS-S-ischiensis_contig8:3695720..36958401695741009.3011801-CDS-S-ischiensis_contig8:3695720..3695840Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3695721..3695840 +
1622817301.8913972-CDS-S-ischiensis_contig8:3696248..36965511622817301.8913972-CDS-S-ischiensis_contig8:3696248..3696551Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3696249..3696551 +
1695741009.315955-CDS-S-ischiensis_contig8:3696248..36965511695741009.315955-CDS-S-ischiensis_contig8:3696248..3696551Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3696249..3696551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19755.1prot_S-ischiensis_contig8.19755.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3695721..3696551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19755.1

>prot_S-ischiensis_contig8.19755.1 ID=prot_S-ischiensis_contig8.19755.1|Name=mRNA_S-ischiensis_contig8.19755.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
MALRHALRRSLVASSARQAVRGAHGAPQPPFARNLAPTSRLDENHELVWD
DGVAPETCLDFDAPHVPFAEGARWWLGGFAFFGGMLGLTYLSDAESKRLA
VRRGETLPPTAFDPRTLFKGGGGAGAGADDDEEEEEEEEE*
back to top

mRNA from alignment at S-ischiensis_contig8:3695721..3696551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19755.1 ID=mRNA_S-ischiensis_contig8.19755.1|Name=mRNA_S-ischiensis_contig8.19755.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=831bp|location=Sequence derived from alignment at S-ischiensis_contig8:3695721..3696551+ (Schizocladia ischiensis KU_0333)
ATGGCTCTTCGTCATGCGCTGAGGCGGTCGCTAGTGGCCTCATCCGCCCG GCAAGCCGTGCGTGGCGCCCATGGCGCTCCCCAGCCGCCATTTGCGCGAA ACTTGGCTCCGACATCCAGGGTGAGTGTGCGTGTGCCTTGTGTTGTGAGG GGTGGAAGCGGAGCGTGCGCAATGCAGCGACCGCTTCCCTGCCGCTCATG GGCGTTGCGAAACTGTACCCGACGTTCCTGGCCTTTTGGCTAGCTAAGAT GCTGTCCTTCCCTTGCCTTGCGGAGCAGCGTTGTGACCAGCCGGTCCCTG CGTCGGTAGGAGCTCCGGCCCTGGGGTGACAGATGATGGTCCCATCTAGG CGCCTTGCCCGGATACGTGCTTCCCGCGCCCGTCGACATCTCCAGACCAC CTAACTCACGCATATTTGCCTCTCCCGCCCTCCCCGTCCCGCGGGCGGTG GCTGAACAATATATAAATGAACATGATGGAATGGCCCGAAACAAAAGCAC CACACCATGTCTGTGCTCTGTGCGACAGCTCGACGAGAACCACGAGCTCG TCTGGGACGATGGCGTGGCGCCGGAGACCTGCCTCGACTTCGACGCGCCG CACGTGCCCTTTGCAGAAGGCGCCCGGTGGTGGCTGGGGGGTTTCGCCTT CTTCGGAGGCATGCTCGGGCTGACCTACCTGAGCGACGCGGAGAGCAAGC GGCTGGCGGTGCGGCGGGGAGAGACGCTCCCCCCCACCGCCTTCGACCCC CGGACTCTCTTCAAGGGCGGCGGGGGCGCGGGCGCGGGAGCGGACGACGA CGAGGAGGAGGAGGAGGAGGAGGAAGAGTAA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:3695721..3696551+

>mRNA_S-ischiensis_contig8.19755.1 ID=mRNA_S-ischiensis_contig8.19755.1|Name=mRNA_S-ischiensis_contig8.19755.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig8:3695721..3696551+ (Schizocladia ischiensis KU_0333)
ATGGCTCTTCGTCATGCGCTGAGGCGGTCGCTAGTGGCCTCATCCGCCCG
GCAAGCCGTGCGTGGCGCCCATGGCGCTCCCCAGCCGCCATTTGCGCGAA
ACTTGGCTCCGACATCCAGGATGGCTCTTCGTCATGCGCTGAGGCGGTCG
CTAGTGGCCTCATCCGCCCGGCAAGCCGTGCGTGGCGCCCATGGCGCTCC
CCAGCCGCCATTTGCGCGAAACTTGGCTCCGACATCCAGGCTCGACGAGA
ACCACGAGCTCGTCTGGGACGATGGCGTGGCGCCGGAGACCTGCCTCGAC
TTCGACGCGCCGCACGTGCCCTTTGCAGAAGGCGCCCGGTGGTGGCTGGG
GGGTTTCGCCTTCTTCGGAGGCATGCTCGGGCTGACCTACCTGAGCGACG
CGGAGAGCAAGCGGCTGGCGGTGCGGCGGGGAGAGACGCTCCCCCCCACC
GCCTTCGACCCCCGGACTCTCTTCAAGGGCGGCGGGGGCGCGGGCGCGGG
AGCGGACGACGACGAGGAGGAGGAGGAGGAGGAGGAAGAGTAACTCGACG
AGAACCACGAGCTCGTCTGGGACGATGGCGTGGCGCCGGAGACCTGCCTC
GACTTCGACGCGCCGCACGTGCCCTTTGCAGAAGGCGCCCGGTGGTGGCT
GGGGGGTTTCGCCTTCTTCGGAGGCATGCTCGGGCTGACCTACCTGAGCG
ACGCGGAGAGCAAGCGGCTGGCGGTGCGGCGGGGAGAGACGCTCCCCCCC
ACCGCCTTCGACCCCCGGACTCTCTTCAAGGGCGGCGGGGGCGCGGGCGC
GGGAGCGGACGACGACGAGGAGGAGGAGGAGGAGGAGGAAGAGTAA
back to top