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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Model size | 561 |
| Cds size | 453 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817263.889202-UTR-S-ischiensis_contig8:3494616..3494626 | 1622817263.889202-UTR-S-ischiensis_contig8:3494616..3494626 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3494617..3494626 + |
| 1695740979.4368765-UTR-S-ischiensis_contig8:3494616..3494626 | 1695740979.4368765-UTR-S-ischiensis_contig8:3494616..3494626 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3494617..3494626 + |
| 1622817263.962663-UTR-S-ischiensis_contig8:3496951..3497049 | 1622817263.962663-UTR-S-ischiensis_contig8:3496951..3497049 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3496952..3497049 + |
| 1695740979.478848-UTR-S-ischiensis_contig8:3496951..3497049 | 1695740979.478848-UTR-S-ischiensis_contig8:3496951..3497049 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3496952..3497049 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817263.9104292-CDS-S-ischiensis_contig8:3494626..3494827 | 1622817263.9104292-CDS-S-ischiensis_contig8:3494626..3494827 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3494627..3494827 + |
| 1695740979.4476938-CDS-S-ischiensis_contig8:3494626..3494827 | 1695740979.4476938-CDS-S-ischiensis_contig8:3494626..3494827 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3494627..3494827 + |
| 1622817263.934036-CDS-S-ischiensis_contig8:3495431..3495545 | 1622817263.934036-CDS-S-ischiensis_contig8:3495431..3495545 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3495432..3495545 + |
| 1695740979.4566424-CDS-S-ischiensis_contig8:3495431..3495545 | 1695740979.4566424-CDS-S-ischiensis_contig8:3495431..3495545 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3495432..3495545 + |
| 1622817263.94771-CDS-S-ischiensis_contig8:3496813..3496951 | 1622817263.94771-CDS-S-ischiensis_contig8:3496813..3496951 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3496814..3496951 + |
| 1695740979.4670641-CDS-S-ischiensis_contig8:3496813..3496951 | 1695740979.4670641-CDS-S-ischiensis_contig8:3496813..3496951 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3496814..3496951 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19738.1 >prot_S-ischiensis_contig8.19738.1 ID=prot_S-ischiensis_contig8.19738.1|Name=mRNA_S-ischiensis_contig8.19738.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=151bp
MRPVHRVQGDVWLFLSSLAALFWWYGWRTCVVTAVRDLAWFCAGAGSWSL
AYHAQGRSKPRKPVKDNPRVARFVLDSVLALWWGATLSGCAEALSAHLLL
DVRLQVLANTALSVLFFVLGSAVFSGLQKWVTKDPKLDPPLWMVVVCVVS
* back to topmRNA from alignment at S-ischiensis_contig8:3494617..3497049+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19738.1 ID=mRNA_S-ischiensis_contig8.19738.1|Name=mRNA_S-ischiensis_contig8.19738.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2433bp|location=Sequence derived from alignment at S-ischiensis_contig8:3494617..3497049+ (Schizocladia ischiensis KU_0333)
GAAGAGGAACATGCGACCGGTTCATCGCGTGCAGGGCGACGTGTGGCTGT
TTTTATCGTCCCTTGCCGCCCTCTTCTGGTGGTACGGGTGGAGAACGTGC
GTTGTTACTGCCGTGCGCGATCTGGCGTGGTTCTGCGCGGGGGCAGGGTC
GTGGTCTCTCGCTTACCACGCGCAAGGACGTTCCAAGCCCCGCAAGCCTG
TCAAGGACAACGTGAGCCGTGTGCATTGCCTGTTGAGACCCAAGGCAAAA
CGAAAAAATTAAAATAGGCGAACGGCCAACCTTGGTTCATTGCCCACTTG
CCAAACAGGGGGGAGTGCGCGTTGGCAAGAATGGGAAGCACCACTGTTTT
AGGTAAACAGCGTGACCACCTCCTCGAGCGGAGAAATGGCAAGCACCACA
ATGTATGCTAATTTTTTAATTATTTTGATGGCATGCGAGTTCCGGGTCGC
GTGTTAATAATACAACCACGTTTGCTAGCGTACTCGTAGGCCGTATCTAG
ATACTGCAGCACATCGCCGAGTCCGAACAATAGAGCAAGCGCCGTGAGCG
TGGCTTAGCATCGTTCACCATCCGGACGTTTCGGTTTGGGCGAACACACT
CTAGGCGCCGAACCTCGTGAGCAACGCGAACAAACATCGCCCATGACAGC
TGATGGGCTAAGTCCGACATACCAGTCACGACAATCAAAATCAACCTTCC
CCGGGGATGATTGCACCACTCCCCCGCCTAACTTGAAGCAACGCCTTTGT
CTCGCCGGCCGGTCGGGATCTGCGGCTTGCGACACCGCGCGGGTGGGCCG
GGGGTGGGACGGCAGCCCCGAGTAGCTCGTTTCGTGCTGGACTCCGTGCT
GGCGCTGTGGTGGGGGGCCACCCTCTCCGGCTGCGCAGAGGCCCTCTCAG
CCCACCTCCTCCTGGATGTGCGATTGCAGGTCAGTGGCCCCGTTGCAGGG
AAAAGGCTATTGGATTTCGATCCGTGGGTGCTCGTCGTGTGGGTACCGGC
GTATCGAACGGACTATGTGATCGTCTTCTCAGGGCCGTACAAGGTTTCTA
CCTGCGCTCTGTGCATATACACTGTCCTGCTCCCCGTCTCGGGCGAGGCG
CCATACAATTGTAGAGTGGGTAGGGGTCACTGGTCTCGGGCATATTTACA
GCAAGTACAGCGTGAGTACATATATATACATTCCATATATACTTCCAAGC
ATACTTGGGACTACTTTGTGATGTACTCGTGCCATCCCGACACGAGATAC
TTCAGGAAGTACATTGTCCCACACACAAGGCACTCGTTAATTGAGTTCCA
ACCGTGGTATTTAAGTGGGGCTTGTGTGCTCTTGTGTGTTCCTCTGCGTA
TGTGTGTGTGTGTTGCGCGCCCCTTGGCTTGCACGCCTTCTGACGGGGGG
TTCTGCACTTTACTCTCCTTTCTCTGCTTGGCGAAATGCGCACCTGTGTT
GCAAACAGCACCGCCGCCTCGGCCAGCGCCCGTAGATACGGCCGTGGGCA
CCAGCCAGCCCGAAGACATCGACCATGCGTCCCTGCCACTGTAGAGTTTG
TACCGTACTCGAGTACTGTACAGTTGTACAGCACTCGAATACCTGCACCG
TGCTGCTCCAGTAGGCGCCGTACTTCCGGGAACTACAATACACGCACTTG
TTATCGTCCGGGAGTTCCGGAATCCTGATTGGGGAAGGCGTGCTGCCGAA
GCGCATCGCCGGTCGCCGGTCTCTCGCGCCGTGGTTTGCCAGTGTGCGGA
TTTGCCGATGCGCGTCGTTCCATCCCTCCGAAGCTCTCTTTCCTCGGAGC
GGTTCGCCAGACGGCCCCAGCCGCTCCCGATTGTTTTCTGGTGCCCTCGC
CCTCTATATGCGGTCGTCATCGCACGCGGTGGGTCATGCATCGGCGTCCC
GATTCGCGGTCGTCGATTGAACCTGGCTCGACGGTCGCGGCGCTCGCTCC
TGTCGAGTTGGGCGTGTGTTCGAGTCCCTCGACTGGCTACTTGTATTTCC
TCCCCCGGCCCTCTCCTATTCGCATCATGTTGTCCCAGCCCGCTTTCCTC
CGAATGCTCGCAGTGTCAAACATAGCCCAAAAACTGCGCGTTCGCGTCCT
CACTATCTCGTTTACCTATATCCCGTCGTCAACAGCGCGTAGTCAACAGT
CTCAGCGCCACCGCCGACGTTCTTCGTGCTGGTTTTTGTCGTCGCAGGTC
CTGGCAAACACGGCCCTCAGCGTGCTGTTCTTCGTGCTGGGCAGCGCGGT
CTTCTCCGGGCTGCAAAAGTGGGTCACCAAGGACCCCAAGCTCGACCCCC
CGCTGTGGATGGTGGTTGTCTGTGTCGTGAGCTGATTTGATTGGTCGCCA
GGTCTTGCCATCCGCGAGTGAGAGGAACTGTTCTTGTTGAATTATTGTGA
TAGTATGCGAGTGGAGACGAAATGTTCTTGTTG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:3494617..3497049+ >mRNA_S-ischiensis_contig8.19738.1 ID=mRNA_S-ischiensis_contig8.19738.1|Name=mRNA_S-ischiensis_contig8.19738.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=906bp|location=Sequence derived from alignment at S-ischiensis_contig8:3494617..3497049+ (Schizocladia ischiensis KU_0333)
ATGCGACCGGTTCATCGCGTGCAGGGCGACGTGTGGCTGTTTTTATCGTC
CCTTGCCGCCCTCTTCTGGTGGTACGGGTGGAGAACGTGCGTTGTTACTG
CCGTGCGCGATCTGGCGTGGTTCTGCGCGGGGGCAGGGTCGTGGTCTCTC
GCTTACCACGCGCAAGGACGTTCCAAGCCCCGCAAGCCTGTCAAGGACAA
CATGCGACCGGTTCATCGCGTGCAGGGCGACGTGTGGCTGTTTTTATCGT
CCCTTGCCGCCCTCTTCTGGTGGTACGGGTGGAGAACGTGCGTTGTTACT
GCCGTGCGCGATCTGGCGTGGTTCTGCGCGGGGGCAGGGTCGTGGTCTCT
CGCTTACCACGCGCAAGGACGTTCCAAGCCCCGCAAGCCTGTCAAGGACA
ACCCCCGAGTAGCTCGTTTCGTGCTGGACTCCGTGCTGGCGCTGTGGTGG
GGGGCCACCCTCTCCGGCTGCGCAGAGGCCCTCTCAGCCCACCTCCTCCT
GGATGTGCGATTGCAGCCCCGAGTAGCTCGTTTCGTGCTGGACTCCGTGC
TGGCGCTGTGGTGGGGGGCCACCCTCTCCGGCTGCGCAGAGGCCCTCTCA
GCCCACCTCCTCCTGGATGTGCGATTGCAGGTCCTGGCAAACACGGCCCT
CAGCGTGCTGTTCTTCGTGCTGGGCAGCGCGGTCTTCTCCGGGCTGCAAA
AGTGGGTCACCAAGGACCCCAAGCTCGACCCCCCGCTGTGGATGGTGGTT
GTCTGTGTCGTGAGCTGAGTCCTGGCAAACACGGCCCTCAGCGTGCTGTT
CTTCGTGCTGGGCAGCGCGGTCTTCTCCGGGCTGCAAAAGTGGGTCACCA
AGGACCCCAAGCTCGACCCCCCGCTGTGGATGGTGGTTGTCTGTGTCGTG
AGCTGA back to top
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