mRNA_S-ischiensis_contig8.19734.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19734.1
Unique NamemRNA_S-ischiensis_contig8.19734.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3479137..3479870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size734
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19734.1prot_S-ischiensis_contig8.19734.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3479204..3479797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.9151638-UTR-S-ischiensis_contig8:3479136..34792031622817268.9151638-UTR-S-ischiensis_contig8:3479136..3479203Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3479137..3479203 +
1695740982.360004-UTR-S-ischiensis_contig8:3479136..34792031695740982.360004-UTR-S-ischiensis_contig8:3479136..3479203Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3479137..3479203 +
1622817268.9428327-UTR-S-ischiensis_contig8:3479797..34798701622817268.9428327-UTR-S-ischiensis_contig8:3479797..3479870Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3479798..3479870 +
1695740982.3853161-UTR-S-ischiensis_contig8:3479797..34798701695740982.3853161-UTR-S-ischiensis_contig8:3479797..3479870Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3479798..3479870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.926639-CDS-S-ischiensis_contig8:3479203..34797971622817268.926639-CDS-S-ischiensis_contig8:3479203..3479797Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3479204..3479797 +
1695740982.3725085-CDS-S-ischiensis_contig8:3479203..34797971695740982.3725085-CDS-S-ischiensis_contig8:3479203..3479797Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3479204..3479797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19734.1

>prot_S-ischiensis_contig8.19734.1 ID=prot_S-ischiensis_contig8.19734.1|Name=mRNA_S-ischiensis_contig8.19734.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=198bp
MHIFRSTVPQYSGSYHTALGHTVHNVVHTNNGPGQYCFTKHLHAAKSISS
ELRLQPCSVCHALKLVYLQLSIVTPTLIMLRTPILPCPLLHLSVAPLCGP
SDHPRVPGAPVLPGPLKNLQMSPLCSPRASPLVPGAPILPGPLKNLQMPP
LCGARASPLVPGAPVLPGPLKNLQVPPNLRCYSKSPPSRGTHSPWPT*
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mRNA from alignment at S-ischiensis_contig8:3479137..3479870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19734.1 ID=mRNA_S-ischiensis_contig8.19734.1|Name=mRNA_S-ischiensis_contig8.19734.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=734bp|location=Sequence derived from alignment at S-ischiensis_contig8:3479137..3479870+ (Schizocladia ischiensis KU_0333)
GTGTACGCTGTGTGCTTGATTACTACTGCAGATACTTAGTCATGCTGTAG
GAGTTGTCATCACCCTGATGCACATCTTTCGTTCCACTGTACCGCAGTAC
AGTGGCAGCTATCACACTGCACTGGGTCATACTGTACACAATGTGGTCCA
TACCAACAATGGTCCAGGACAGTACTGCTTCACAAAACACCTACATGCGG
CGAAGTCGATCTCGTCTGAGTTACGACTACAGCCATGCTCAGTTTGCCAT
GCACTGAAACTAGTGTACCTGCAACTCTCGATCGTTACTCCCACGTTAAT
AATGCTCCGGACACCCATTCTCCCGTGCCCACTGCTCCATCTCAGTGTGG
CCCCGTTGTGCGGCCCAAGTGATCACCCACGTGTCCCAGGAGCACCCGTT
CTCCCTGGCCCACTGAAGAATCTCCAAATGTCCCCACTCTGCAGCCCTAG
AGCAAGTCCGCTCGTTCCAGGGGCACCCATTCTCCCTGGCCCACTTAAGA
ACCTCCAAATGCCCCCCCTCTGCGGCGCTAGAGCAAGTCCGCTCGTTCCA
GGGGCACCCGTTCTCCCTGGCCCACTTAAGAACCTCCAAGTGCCCCCTAA
TCTGCGGTGCTACAGCAAGTCCCCTCCTTCCAGGGGCACCCATTCTCCCT
GGCCCACTTAAGAGGCTCCAAATGCCCCTGCCTTGCAGCCCCCCCACATG
TCCGCTCGTCCCAGGGGGCCCCCGTCTCCCCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3479137..3479870+

>mRNA_S-ischiensis_contig8.19734.1 ID=mRNA_S-ischiensis_contig8.19734.1|Name=mRNA_S-ischiensis_contig8.19734.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1188bp|location=Sequence derived from alignment at S-ischiensis_contig8:3479137..3479870+ (Schizocladia ischiensis KU_0333)
ATGCACATCTTTCGTTCCACTGTACCGCAGTACAGTGGCAGCTATCACAC
TGCACTGGGTCATACTGTACACAATGTGGTCCATACCAACAATGGTCCAG
GACAGTACTGCTTCACAAAACACCTACATGCGGCGAAGTCGATCTCGTCT
GAGTTACGACTACAGCCATGCTCAGTTTGCCATGCACTGAAACTAGTGTA
CCTGCAACTCTCGATCGTTACTCCCACGTTAATAATGCTCCGGACACCCA
TTCTCCCGTGCCCACTGCTCCATCTCAGTGTGGCCCCGTTGTGCGGCCCA
AGTGATCACCCACGTGTCCCAGGAGCACCCGTTCTCCCTGGCCCACTGAA
GAATCTCCAAATGTCCCCACTCTGCAGCCCTAGAGCAAGTCCGCTCGTTC
CAGGGGCACCCATTCTCCCTGGCCCACTTAAGAACCTCCAAATGCCCCCC
CTCTGCGGCGCTAGAGCAAGTCCGCTCGTTCCAGGGGCACCCGTTCTCCC
TGGCCCACTTAAGAACCTCCAAGTGCCCCCTAATCTGCGGTGCTACAGCA
AGTCCCCTCCTTCCAGGGGCACCCATTCTCCCTGGCCCACTTAAATGCAC
ATCTTTCGTTCCACTGTACCGCAGTACAGTGGCAGCTATCACACTGCACT
GGGTCATACTGTACACAATGTGGTCCATACCAACAATGGTCCAGGACAGT
ACTGCTTCACAAAACACCTACATGCGGCGAAGTCGATCTCGTCTGAGTTA
CGACTACAGCCATGCTCAGTTTGCCATGCACTGAAACTAGTGTACCTGCA
ACTCTCGATCGTTACTCCCACGTTAATAATGCTCCGGACACCCATTCTCC
CGTGCCCACTGCTCCATCTCAGTGTGGCCCCGTTGTGCGGCCCAAGTGAT
CACCCACGTGTCCCAGGAGCACCCGTTCTCCCTGGCCCACTGAAGAATCT
CCAAATGTCCCCACTCTGCAGCCCTAGAGCAAGTCCGCTCGTTCCAGGGG
CACCCATTCTCCCTGGCCCACTTAAGAACCTCCAAATGCCCCCCCTCTGC
GGCGCTAGAGCAAGTCCGCTCGTTCCAGGGGCACCCGTTCTCCCTGGCCC
ACTTAAGAACCTCCAAGTGCCCCCTAATCTGCGGTGCTACAGCAAGTCCC
CTCCTTCCAGGGGCACCCATTCTCCCTGGCCCACTTAA
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