mRNA_S-ischiensis_contig8.19728.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19728.1
Unique NamemRNA_S-ischiensis_contig8.19728.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3394514..3395041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size516
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19728.1prot_S-ischiensis_contig8.19728.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3394580..3394915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.684436-UTR-S-ischiensis_contig8:3394513..33945791622817263.684436-UTR-S-ischiensis_contig8:3394513..3394579Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3394514..3394579 -
1695740979.3465004-UTR-S-ischiensis_contig8:3394513..33945791695740979.3465004-UTR-S-ischiensis_contig8:3394513..3394579Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3394514..3394579 -
1622817263.7292752-UTR-S-ischiensis_contig8:3394915..33950411622817263.7292752-UTR-S-ischiensis_contig8:3394915..3395041Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3394916..3395041 -
1695740979.3784807-UTR-S-ischiensis_contig8:3394915..33950411695740979.3784807-UTR-S-ischiensis_contig8:3394915..3395041Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3394916..3395041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.6964064-CDS-S-ischiensis_contig8:3394579..33948881622817263.6964064-CDS-S-ischiensis_contig8:3394579..3394888Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3394580..3394888 -
1695740979.3579233-CDS-S-ischiensis_contig8:3394579..33948881695740979.3579233-CDS-S-ischiensis_contig8:3394579..3394888Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3394580..3394888 -
1622817263.7153306-CDS-S-ischiensis_contig8:3394900..33949151622817263.7153306-CDS-S-ischiensis_contig8:3394900..3394915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3394901..3394915 -
1695740979.3681629-CDS-S-ischiensis_contig8:3394900..33949151695740979.3681629-CDS-S-ischiensis_contig8:3394900..3394915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3394901..3394915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19728.1

>prot_S-ischiensis_contig8.19728.1 ID=prot_S-ischiensis_contig8.19728.1|Name=mRNA_S-ischiensis_contig8.19728.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
MGLWMVWAAPTWLLFVARARWAGRPRPCGPLRDKGQAGQFHGVGHHGPKR
SLTIVYLELDNKLREHQDVPAMPGTTVMTTAPRLLVLSTTVEAAVADTNP
LSQVSFH*
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mRNA from alignment at S-ischiensis_contig8:3394514..3395041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19728.1 ID=mRNA_S-ischiensis_contig8.19728.1|Name=mRNA_S-ischiensis_contig8.19728.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=528bp|location=Sequence derived from alignment at S-ischiensis_contig8:3394514..3395041- (Schizocladia ischiensis KU_0333)
GCATAATCAGGCCAGCCTGAGGTTGGGATTTCAGCGTGAGCTCAACCTCA
TGGGATGGTGTCTGAGGGTCGCCTTGGCGGGGGTCTTGCCCCCCCCACCT
GAACCGCCTAGGCCCGGGCGACCTGGATGGGGTTGTGGATGGCGTTGTCG
CAGGTGTGGGCCGCTCCGACCTGGTTGCTCTTTGTAGCTCGAGCTAGATG
GGCAGGTCGCCCACGTCCATGTGGCCCACTCCGCGACAAAGGCCAAGCAG
GCCAATTTCACGGAGTGGGCCACCATGGACCTAAGCGATCGCTCACCATC
GTCTACCTGGAGCTCGATAACAAGCTCAGAGAGCACCAAGATGTGCCAGC
CATGCCTGGAACAACAGTCATGACGACTGCACCTCGCTTGCTTGTCTTAT
CTACTACAGTAGAGGCTGCTGTAGCAGACACCAATCCGTTGAGCCAAGTA
AGCTTTCATTAGTATAGAAACATGTACTATTATGGTACGGACAGTATTAA
TGGGAACAACACAGGGCGAGGTGCGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3394514..3395041-

>mRNA_S-ischiensis_contig8.19728.1 ID=mRNA_S-ischiensis_contig8.19728.1|Name=mRNA_S-ischiensis_contig8.19728.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig8:3394514..3395041- (Schizocladia ischiensis KU_0333)
ATGGGGTTGTGGATGATGGGGTTGTGGATGGTGTGGGCCGCTCCGACCTG
GTTGCTCTTTGTAGCTCGAGCTAGATGGGCAGGTCGCCCACGTCCATGTG
GCCCACTCCGCGACAAAGGCCAAGCAGGCCAATTTCACGGAGTGGGCCAC
CATGGACCTAAGCGATCGCTCACCATCGTCTACCTGGAGCTCGATAACAA
GCTCAGAGAGCACCAAGATGTGCCAGCCATGCCTGGAACAACAGTCATGA
CGACTGCACCTCGCTTGCTTGTCTTATCTACTACAGTAGAGGCTGCTGTA
GCAGACACCAATCCGTTGAGCCAAGTAAGCTTTCATTAGGTGTGGGCCGC
TCCGACCTGGTTGCTCTTTGTAGCTCGAGCTAGATGGGCAGGTCGCCCAC
GTCCATGTGGCCCACTCCGCGACAAAGGCCAAGCAGGCCAATTTCACGGA
GTGGGCCACCATGGACCTAAGCGATCGCTCACCATCGTCTACCTGGAGCT
CGATAACAAGCTCAGAGAGCACCAAGATGTGCCAGCCATGCCTGGAACAA
CAGTCATGACGACTGCACCTCGCTTGCTTGTCTTATCTACTACAGTAGAG
GCTGCTGTAGCAGACACCAATCCGTTGAGCCAAGTAAGCTTTCATTAG
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