mRNA_S-ischiensis_contig8.19727.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19727.1
Unique NamemRNA_S-ischiensis_contig8.19727.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3393538..3394444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size907
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19727.1prot_S-ischiensis_contig8.19727.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3393712..3394179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.86854-UTR-S-ischiensis_contig8:3393537..33937111622817268.86854-UTR-S-ischiensis_contig8:3393537..3393711Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3393538..3393711 +
1695740982.320849-UTR-S-ischiensis_contig8:3393537..33937111695740982.320849-UTR-S-ischiensis_contig8:3393537..3393711Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3393538..3393711 +
1622817268.8882687-UTR-S-ischiensis_contig8:3394179..33944441622817268.8882687-UTR-S-ischiensis_contig8:3394179..3394444Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3394180..3394444 +
1695740982.346768-UTR-S-ischiensis_contig8:3394179..33944441695740982.346768-UTR-S-ischiensis_contig8:3394179..3394444Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3394180..3394444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.8786552-CDS-S-ischiensis_contig8:3393711..33941791622817268.8786552-CDS-S-ischiensis_contig8:3393711..3394179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3393712..3394179 +
1695740982.3304975-CDS-S-ischiensis_contig8:3393711..33941791695740982.3304975-CDS-S-ischiensis_contig8:3393711..3394179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3393712..3394179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19727.1

>prot_S-ischiensis_contig8.19727.1 ID=prot_S-ischiensis_contig8.19727.1|Name=mRNA_S-ischiensis_contig8.19727.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=156bp
MNGLAAGQVPVVASDWSRPVKLVPLHNSRVTSVTGYFEVLPSTSKHILLQ
PHGQPSPAMLAVPTGMHYSPCDWTGSYAVPGMPPAVVREQDGTIPYLKVL
TNTTKYRSTVHPRKTLREVWTTYDIGPLPMYSTFVSKYVCCVEKPTWRTD
HFRTR*
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mRNA from alignment at S-ischiensis_contig8:3393538..3394444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19727.1 ID=mRNA_S-ischiensis_contig8.19727.1|Name=mRNA_S-ischiensis_contig8.19727.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=907bp|location=Sequence derived from alignment at S-ischiensis_contig8:3393538..3394444+ (Schizocladia ischiensis KU_0333)
CACTGCAGAGTTGGAAACTGGTGGCTTGTAACACGCGCCGCTTGGTTTGG
TCTGAAAAAAGAAACGGACTGAATTAGGTGGGCTAGAGGTGGGCACGATG
CCCACTGCAATCGGGACTACTACACAGATGGATGGCACCAGAAAACATGC
ATGAAATCATAGGGGAAAAACAGGATGAATGGCCTCGCGGCCGGTCAGGT
ACCGGTTGTTGCCAGTGACTGGTCCCGGCCAGTGAAACTGGTGCCACTCC
ACAACTCTAGAGTGACCTCAGTAACCGGTTACTTCGAAGTACTTCCAAGT
ACTTCGAAGCACATTTTGCTCCAACCACACGGACAGCCTAGTCCAGCGAT
GCTTGCGGTTCCCACTGGCATGCACTACTCGCCATGTGACTGGACGGGGA
GCTACGCCGTCCCGGGCATGCCACCGGCCGTCGTGAGAGAGCAAGATGGG
ACCATCCCGTACCTCAAGGTGCTTACCAATACTACGAAGTACCGCAGTAC
AGTACATCCCCGGAAAACACTACGCGAGGTTTGGACCACCTACGACATAG
GCCCGCTTCCCATGTACAGTACATTCGTTTCAAAGTATGTTTGCTGTGTG
GAGAAACCCACATGGCGTACCGACCACTTCAGAACCCGTTAATTGCTTGG
CAAATGTAGAGTAGAGGGGCTCTTCTTAAATCATCTCATCCAGTTCCGCG
AAGTACTTTACTTCGGTACGTCCAGCGGGTGCGCGTACGGATCCCGGCCT
TGGGCCTTGAGCGCATGCCACGACAGCAGGCGCTTGATACAGGCGTGCTC
AAAATCCAACAATACAATACACACTTTCGTTCGAAGCATTTCGGGTAATT
AAACTCACTTGGCTGCCAGAGCGTTGTCTAGTGCTATTTCTCCTCCCCGC
CCTCCTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3393538..3394444+

>mRNA_S-ischiensis_contig8.19727.1 ID=mRNA_S-ischiensis_contig8.19727.1|Name=mRNA_S-ischiensis_contig8.19727.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=936bp|location=Sequence derived from alignment at S-ischiensis_contig8:3393538..3394444+ (Schizocladia ischiensis KU_0333)
ATGAATGGCCTCGCGGCCGGTCAGGTACCGGTTGTTGCCAGTGACTGGTC
CCGGCCAGTGAAACTGGTGCCACTCCACAACTCTAGAGTGACCTCAGTAA
CCGGTTACTTCGAAGTACTTCCAAGTACTTCGAAGCACATTTTGCTCCAA
CCACACGGACAGCCTAGTCCAGCGATGCTTGCGGTTCCCACTGGCATGCA
CTACTCGCCATGTGACTGGACGGGGAGCTACGCCGTCCCGGGCATGCCAC
CGGCCGTCGTGAGAGAGCAAGATGGGACCATCCCGTACCTCAAGGTGCTT
ACCAATACTACGAAGTACCGCAGTACAGTACATCCCCGGAAAACACTACG
CGAGGTTTGGACCACCTACGACATAGGCCCGCTTCCCATGTACAGTACAT
TCGTTTCAAAGTATGTTTGCTGTGTGGAGAAACCCACATGGCGTACCGAC
CACTTCAGAACCCGTTAAATGAATGGCCTCGCGGCCGGTCAGGTACCGGT
TGTTGCCAGTGACTGGTCCCGGCCAGTGAAACTGGTGCCACTCCACAACT
CTAGAGTGACCTCAGTAACCGGTTACTTCGAAGTACTTCCAAGTACTTCG
AAGCACATTTTGCTCCAACCACACGGACAGCCTAGTCCAGCGATGCTTGC
GGTTCCCACTGGCATGCACTACTCGCCATGTGACTGGACGGGGAGCTACG
CCGTCCCGGGCATGCCACCGGCCGTCGTGAGAGAGCAAGATGGGACCATC
CCGTACCTCAAGGTGCTTACCAATACTACGAAGTACCGCAGTACAGTACA
TCCCCGGAAAACACTACGCGAGGTTTGGACCACCTACGACATAGGCCCGC
TTCCCATGTACAGTACATTCGTTTCAAAGTATGTTTGCTGTGTGGAGAAA
CCCACATGGCGTACCGACCACTTCAGAACCCGTTAA
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