mRNA_S-ischiensis_contig8.19723.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19723.1
Unique NamemRNA_S-ischiensis_contig8.19723.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3366784..3367345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size558
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.825165-UTR-S-ischiensis_contig8:3366783..33667871622817268.825165-UTR-S-ischiensis_contig8:3366783..3366787Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3366784..3366787 +
1695740982.298496-UTR-S-ischiensis_contig8:3366783..33667871695740982.298496-UTR-S-ischiensis_contig8:3366783..3366787Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3366784..3366787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.8393357-CDS-S-ischiensis_contig8:3366787..33673451622817268.8393357-CDS-S-ischiensis_contig8:3366787..3367345Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3366788..3367345 +
1695740982.3106112-CDS-S-ischiensis_contig8:3366787..33673451695740982.3106112-CDS-S-ischiensis_contig8:3366787..3367345Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3366788..3367345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19723.1prot_S-ischiensis_contig8.19723.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3366788..3367345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19723.1

>prot_S-ischiensis_contig8.19723.1 ID=prot_S-ischiensis_contig8.19723.1|Name=mRNA_S-ischiensis_contig8.19723.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=186bp
MCPTRSRPLSVASLACGRDWIRSEAGASAEVPRLPQGPLTAHRGWERGRT
SNKACVYLMAYSGRAGVSADRARPRGCTLPLRHVPTHSQARVNLPGAGTR
ASCARVPRIVATARRPVSMHDGIPPSRGEEGMPWRRACPLLSTHRTSSRS
LWPHACVCVRVPMWWPQRPLGLSLTVGTQCGGGGGG
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mRNA from alignment at S-ischiensis_contig8:3366784..3367345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19723.1 ID=mRNA_S-ischiensis_contig8.19723.1|Name=mRNA_S-ischiensis_contig8.19723.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=562bp|location=Sequence derived from alignment at S-ischiensis_contig8:3366784..3367345+ (Schizocladia ischiensis KU_0333)
TTCCATGTGCCCCACCAGGTCAAGGCCATTGTCCGTGGCCTCCTTGGCAT
GCGGGAGGGACTGGATTCGGTCTGAGGCGGGAGCCTCTGCTGAAGTCCCC
CGGCTGCCTCAGGGTCCCCTCACCGCACACAGGGGCTGGGAAAGAGGGCG
GACGTCGAACAAGGCGTGCGTGTACTTGATGGCCTACTCTGGTCGTGCTG
GAGTCTCGGCCGACCGGGCCCGGCCGCGTGGATGCACGCTGCCCCTGAGA
CACGTGCCCACGCACTCGCAAGCTCGTGTCAATCTCCCGGGGGCGGGCAC
TCGGGCGTCGTGCGCGCGTGTCCCGCGAATCGTCGCGACTGCACGCAGGC
CCGTGAGCATGCATGACGGCATTCCCCCCAGTAGAGGCGAGGAGGGTATG
CCCTGGAGGCGCGCATGTCCCTTGCTGAGTACCCACAGGACGAGTTCCAG
GTCACTCTGGCCGCACGCTTGCGTGTGCGTGCGTGTGCCGATGTGGTGGC
CGCAGCGGCCCCTGGGGCTCAGCCTGACTGTAGGCACACAGTGCGGCGGC
GGGGGGGGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3366784..3367345+

>mRNA_S-ischiensis_contig8.19723.1 ID=mRNA_S-ischiensis_contig8.19723.1|Name=mRNA_S-ischiensis_contig8.19723.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1116bp|location=Sequence derived from alignment at S-ischiensis_contig8:3366784..3367345+ (Schizocladia ischiensis KU_0333)
ATGTGCCCCACCAGGTCAAGGCCATTGTCCGTGGCCTCCTTGGCATGCGG
GAGGGACTGGATTCGGTCTGAGGCGGGAGCCTCTGCTGAAGTCCCCCGGC
TGCCTCAGGGTCCCCTCACCGCACACAGGGGCTGGGAAAGAGGGCGGACG
TCGAACAAGGCGTGCGTGTACTTGATGGCCTACTCTGGTCGTGCTGGAGT
CTCGGCCGACCGGGCCCGGCCGCGTGGATGCACGCTGCCCCTGAGACACG
TGCCCACGCACTCGCAAGCTCGTGTCAATCTCCCGGGGGCGGGCACTCGG
GCGTCGTGCGCGCGTGTCCCGCGAATCGTCGCGACTGCACGCAGGCCCGT
GAGCATGCATGACGGCATTCCCCCCAGTAGAGGCGAGGAGGGTATGCCCT
GGAGGCGCGCATGTCCCTTGCTGAGTACCCACAGGACGAGTTCCAGGTCA
CTCTGGCCGCACGCTTGCGTGTGCGTGCGTGTGCCGATGTGGTGGCCGCA
GCGGCCCCTGGGGCTCAGCCTGACTGTAGGCACACAGTGCGGCGGCGGGG
GGGGCGGGATGTGCCCCACCAGGTCAAGGCCATTGTCCGTGGCCTCCTTG
GCATGCGGGAGGGACTGGATTCGGTCTGAGGCGGGAGCCTCTGCTGAAGT
CCCCCGGCTGCCTCAGGGTCCCCTCACCGCACACAGGGGCTGGGAAAGAG
GGCGGACGTCGAACAAGGCGTGCGTGTACTTGATGGCCTACTCTGGTCGT
GCTGGAGTCTCGGCCGACCGGGCCCGGCCGCGTGGATGCACGCTGCCCCT
GAGACACGTGCCCACGCACTCGCAAGCTCGTGTCAATCTCCCGGGGGCGG
GCACTCGGGCGTCGTGCGCGCGTGTCCCGCGAATCGTCGCGACTGCACGC
AGGCCCGTGAGCATGCATGACGGCATTCCCCCCAGTAGAGGCGAGGAGGG
TATGCCCTGGAGGCGCGCATGTCCCTTGCTGAGTACCCACAGGACGAGTT
CCAGGTCACTCTGGCCGCACGCTTGCGTGTGCGTGCGTGTGCCGATGTGG
TGGCCGCAGCGGCCCCTGGGGCTCAGCCTGACTGTAGGCACACAGTGCGG
CGGCGGGGGGGGCGGG
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