mRNA_S-ischiensis_contig8.19722.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19722.1
Unique NamemRNA_S-ischiensis_contig8.19722.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3363872..3365917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19722.1prot_S-ischiensis_contig8.19722.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3363873..3365917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.5638528-UTR-S-ischiensis_contig8:3363871..33638721622817263.5638528-UTR-S-ischiensis_contig8:3363871..3363872Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3363872..3363872 +
1695740979.2864275-UTR-S-ischiensis_contig8:3363871..33638721695740979.2864275-UTR-S-ischiensis_contig8:3363871..3363872Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3363872..3363872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.5743566-CDS-S-ischiensis_contig8:3363872..33639141622817263.5743566-CDS-S-ischiensis_contig8:3363872..3363914Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3363873..3363914 +
1695740979.2954285-CDS-S-ischiensis_contig8:3363872..33639141695740979.2954285-CDS-S-ischiensis_contig8:3363872..3363914Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3363873..3363914 +
1622817263.5845394-CDS-S-ischiensis_contig8:3365435..33656031622817263.5845394-CDS-S-ischiensis_contig8:3365435..3365603Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3365436..3365603 +
1695740979.30429-CDS-S-ischiensis_contig8:3365435..33656031695740979.30429-CDS-S-ischiensis_contig8:3365435..3365603Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3365436..3365603 +
1622817263.5948513-CDS-S-ischiensis_contig8:3365803..33659171622817263.5948513-CDS-S-ischiensis_contig8:3365803..3365917Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3365804..3365917 +
1695740979.3126965-CDS-S-ischiensis_contig8:3365803..33659171695740979.3126965-CDS-S-ischiensis_contig8:3365803..3365917Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3365804..3365917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19722.1

>prot_S-ischiensis_contig8.19722.1 ID=prot_S-ischiensis_contig8.19722.1|Name=mRNA_S-ischiensis_contig8.19722.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
MLDNACYGKYCELPVNKHGISHLHLTVLAPGDGQGRPDVVLGRTKWTLRA
ESASMDDKLIQIPLIFLQRMVGLVTILLRYREPVPEPLPPGKLATLARSA
IFWFSRPP
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mRNA from alignment at S-ischiensis_contig8:3363872..3365917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19722.1 ID=mRNA_S-ischiensis_contig8.19722.1|Name=mRNA_S-ischiensis_contig8.19722.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2046bp|location=Sequence derived from alignment at S-ischiensis_contig8:3363872..3365917+ (Schizocladia ischiensis KU_0333)
CATGCTTGACAACGCCTGCTACGGGAAGTACTGCGAGCTGCCGGTAAGGG
GCAAGGTTGCTTTTGCACTTTTCAGGCGGGGCGGGGCGCGGCTCATTTCT
GCGGCCCACCGGGTGGCGCACCGCTCTCCTTAGCCGCATCCTGCGTTCTG
TTCTTAGTGCAAGGATACCTTTGTAAGAGCAAGACGGATGGCAGACAGGT
GGAAGGGTATGCGCGCGTGAACGGCTTCGTTCACGTGCGCATACCCCTTC
CACCTGTCTGTCAACCGCCTTGCTGTTTACGTAGTATTGCCTGCTCCCTG
TATTGCGGCTTCGCTGGCAGGTCGATATCCCTTAGGCCGCAGTTGAGCGT
GGGCCTGACTTGTCCGACACAGCCATAGCGGGAGCAGGAGAGGGCGGCGG
ACCGCGAGCAGCCGCTCACGGGGAGCAAGGCATACTTCAGATCAAACAAA
AACGATGGCCGGGACGTGGAAGGCTATGCGCTCGTGATGCCGTTCGCGAG
CGCATAGCCTTCCACGTCCCGGCCACCCTTCTTGTTTGCTCTGAGGTGTG
CCCTGCTCCCCGTGAGCGGCTGCGCTCGCATGTCCATCTCTCGGAGGCCG
CAGTTGAGCGCGGAGCCTGGCTTGCCCGATGCAGGCATACAGGGCCTGCG
AGGGAGCCGCGAGGACAGATTGGCCGATTAGATGTACAAGTACTTCGTAC
TTGGCAGCACAAAGCGCTGGAGTAGTTGGTAGCAGTACAAAGTCCAGGTT
ACGCAGGGTACTGCAAACCAACGGCTGGGCCAAACCCTTTTACCCCTGAG
GTCCGTACAATCATAGGGTCCTGCTCCGCGTGAGCGGCTGCTCACGGTCC
CCCGCCCTCTCCTGCTCCCGCACGTCGGGCGACATACTCTCCTGCCTTAC
TCGCCCACCTCGACTCTGCCGCGGCTGCGCCATTCCCCCCTCTTTCCCCT
TTGGTTTTGTTTTTTACCCTCCGCCCCCCACCAGCTGCCTTGTTCTTAGT
TCCTTGTTGTGATAGTCAATGATATAATAACATTCAATTCTTAAATGAAA
CAACTACTAATACGAGAACAGTCAATCGCACACGCGTGCGATTGTACCTC
GTTACAATGTATATGAATCACCACACCACGCGCCCGCTCCGCCTCTACCA
ACTCCCCTGTTTTGTCATCTCCCATCGCGGCGCTGCAGGTGTGCGGTCCT
CTTGGTGGACCCCGGCGAGGGCGAGGGCTTACAGTAGCCCTTTTACCCCT
GCTATATGGGACTTACACACTAAAACCCTACAGTAGCCCTTTTACCCCTG
CTAAATTGGACTTACACGCTAAAACCCTATGAATATATGGACCTCAGGGG
TTAAAGGGTTAAGCCCAGCCGTTGGCTTGCGGTCCCCTCCAGGACCTGAA
CTTACTGATACCTACTAGACCTGTCGTGTGCATCACTCCCTCTCTCTCTC
TCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCC
TCCCTCCCTCAACAATTCTTTGGACCTGTGAAACGCCCTCGCTCTTCCCC
ACCTGGTGGCGCAGGTGAACAAGCACGGCATCTCACACCTTCACCTGACC
GTCCTGGCCCCGGGGGACGGGCAGGGGCGACCGGACGTGGTGTTGGGCCG
GACAAAGTGGACCCTTCGTGCGGAGTCTGCCTCCATGGATGACAAGCTCA
TCCAGATTCCGCTCATTTTCCTGCAGCGGATGGTGAGCTCACCTGAGCTG
CTCCCTTCGAAGTACTGTAGATTCTCTTCTTGCCTCGCCTCCTCCCGCCC
CGCTCTCCCCCCCTCCCTCACACCTCGGCTGCCCCACCTCACCGCACGGG
GTTGTCTTCCCTACACATGGCTTTCGGCGTGCCCCCGCCCCCGCCCGCTT
CCCACCCCGCAACCGTCGTCTGCCCCATGCAGGTGGGCCTTGTGACGATC
TTGCTGCGCTACAGGGAACCAGTGCCCGAACCCCTGCCCCCGGGCAAACT
GGCCACGCTGGCACGCTCCGCCATCTTCTGGTTCAGCCGGCCCCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3363872..3365917+

>mRNA_S-ischiensis_contig8.19722.1 ID=mRNA_S-ischiensis_contig8.19722.1|Name=mRNA_S-ischiensis_contig8.19722.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig8:3363872..3365917+ (Schizocladia ischiensis KU_0333)
ATGCTTGACAACGCCTGCTACGGGAAGTACTGCGAGCTGCCGATGCTTGA
CAACGCCTGCTACGGGAAGTACTGCGAGCTGCCGGTGAACAAGCACGGCA
TCTCACACCTTCACCTGACCGTCCTGGCCCCGGGGGACGGGCAGGGGCGA
CCGGACGTGGTGTTGGGCCGGACAAAGTGGACCCTTCGTGCGGAGTCTGC
CTCCATGGATGACAAGCTCATCCAGATTCCGCTCATTTTCCTGCAGCGGA
TGGTGAACAAGCACGGCATCTCACACCTTCACCTGACCGTCCTGGCCCCG
GGGGACGGGCAGGGGCGACCGGACGTGGTGTTGGGCCGGACAAAGTGGAC
CCTTCGTGCGGAGTCTGCCTCCATGGATGACAAGCTCATCCAGATTCCGC
TCATTTTCCTGCAGCGGATGGTGGGCCTTGTGACGATCTTGCTGCGCTAC
AGGGAACCAGTGCCCGAACCCCTGCCCCCGGGCAAACTGGCCACGCTGGC
ACGCTCCGCCATCTTCTGGTTCAGCCGGCCCCCGGTGGGCCTTGTGACGA
TCTTGCTGCGCTACAGGGAACCAGTGCCCGAACCCCTGCCCCCGGGCAAA
CTGGCCACGCTGGCACGCTCCGCCATCTTCTGGTTCAGCCGGCCCCCG
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