mRNA_S-ischiensis_contig8.19719.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19719.1
Unique NamemRNA_S-ischiensis_contig8.19719.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19719.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.660e-13
Identity = 63/191 (32.98%), Postives = 86/191 (45.03%), Query Frame = 3 
Query:   15 LGHGLVAVAVAGDQAHSLTSTWRLALPRRRLLGGPARSSPGRYVENTASPVLQRDLGRGWRPTGRLQQVIGTMDN------SQAGAPLLQSDNPLHEAGAILSLVFEYTPTKGFLFMGGVSRAWRALWVESRRPITSLAQATASLPRLQWARAFGWPVHWDLRICPQAAEAGNLEVLKWARANGGPWNDTC 569
            +G G      AGD+ +S+   +R      RL  G   S+ G             + GRG       +Q   T  +      S   AP+    NPL +   IL  +  +    GFLF+ GVSR+WR  W   R P T +  A  S  RL WARA G  + W   +C +AA  G+L  L++ARA G PW+ TC
Sbjct:  643 VGGGNSXXXXAGDEGYSVDDRFR-----GRLSNGNDHSTNGGATPREHRGGSFNNDGRGXXXXXNTRQRSFTASSPRTRPLSSPSAPV----NPLADP-TILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASG--LGWGPSVCARAASGGHLATLRYARALGCPWDWTC 821
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE1.660e-1332.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3348019..3351061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7FMP0
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1412
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19719.1prot_S-ischiensis_contig8.19719.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3349880..3350785 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.7511926-UTR-S-ischiensis_contig8:3348018..33482261622817268.7511926-UTR-S-ischiensis_contig8:3348018..3348226Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3348019..3348226 +
1695740982.2401183-UTR-S-ischiensis_contig8:3348018..33482261695740982.2401183-UTR-S-ischiensis_contig8:3348018..3348226Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3348019..3348226 +
1622817268.765635-UTR-S-ischiensis_contig8:3349857..33498791622817268.765635-UTR-S-ischiensis_contig8:3349857..3349879Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3349858..3349879 +
1695740982.2554734-UTR-S-ischiensis_contig8:3349857..33498791695740982.2554734-UTR-S-ischiensis_contig8:3349857..3349879Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3349858..3349879 +
1622817268.7863662-UTR-S-ischiensis_contig8:3350785..33510611622817268.7863662-UTR-S-ischiensis_contig8:3350785..3351061Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3350786..3351061 +
1695740982.2845314-UTR-S-ischiensis_contig8:3350785..33510611695740982.2845314-UTR-S-ischiensis_contig8:3350785..3351061Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3350786..3351061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.7759123-CDS-S-ischiensis_contig8:3349879..33507851622817268.7759123-CDS-S-ischiensis_contig8:3349879..3350785Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3349880..3350785 +
1695740982.2711785-CDS-S-ischiensis_contig8:3349879..33507851695740982.2711785-CDS-S-ischiensis_contig8:3349879..3350785Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3349880..3350785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19719.1

>prot_S-ischiensis_contig8.19719.1 ID=prot_S-ischiensis_contig8.19719.1|Name=mRNA_S-ischiensis_contig8.19719.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=302bp
MDNSQAGAPLLQSDNPLHEAGAILSLVFEYTPTKGFLFMGGVSRAWRALW
VESRRPITSLAQATASLPRLQWARAFGWPVHWDLRICPQAAEAGNLEVLK
WARANGGPWNDTCSAAARAGHLEVLQWARANGCPWDEMTCSCAAKEGHLR
VLQWVRASGCPWDKWTCCWAARGGHLEVLQWARANGCPWDVVTCCWAARW
GHLEVLQWARANGCPWDAMICSWAASEGHLEVLQWARANGCPWHEGTCAS
AAARGHLEVLQWARASGCPWDHRTVEHARMHGHENVVEWARANGCPEDGE
E*
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mRNA from alignment at S-ischiensis_contig8:3348019..3351061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19719.1 ID=mRNA_S-ischiensis_contig8.19719.1|Name=mRNA_S-ischiensis_contig8.19719.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3043bp|location=Sequence derived from alignment at S-ischiensis_contig8:3348019..3351061+ (Schizocladia ischiensis KU_0333)
GACTCGAGATCGATTTGGGTCACGGGCTTGTTGCGGTTGCAGTGGCAGGT
GACCAAGCCCACTCCCTTACAAGTACGTGGCGTCTTGCTCTACCACGGCG
GAGGTTACTCGGGGGCCCTGCACGTTCTTCTCCCGGGCGGTATGTGGAAA
ACACCGCATCCCCAGTGCTACAGCGGGACCTGGGCAGGGGTTGGCGCCCC
ACAGGGAGGTAAACGCCTCCCAGGCTATTAACGCACGTGTGATGTCGCTC
ATTTTCCGAAGTTCTGCGGAGAACATTGCCCCTGGTGACCTCCTGCACCT
CGCCACAGGCTGTTTGGAGGTGCTTCTTGTACACAAAGCATCCCAAGACC
TTGTCAAGCTGTTTGGCGGTGTCCCTTTCCAGCACACGCAGTGGCCCTGG
AGACTTGCGCATGTTTTCAGCGTTGGGTTTGTCTGTGTCACCGAGGTACA
GTAGGGTTGGGATATTTTTTGTGCCTCATCTGTGCAGCCTGCCCTGCCAA
GGTCAAGGCACTCCCGCCTCATTTGTGTCATTTCCCCGTTTCCCCCTTCC
CATGATGGTCTGTGTCGTGCAATGGCGACCTTCCTTTGTCGAGGCGTGCT
TGCACAAGGGCTCGGAGAAGGGCAAGGTCGTCCTCCCTCCCCAGCGGTTG
TGCGCTGTCACCCCTTGGTACCACCTCTCCCTCCAGTCAAGCTAGTGCTT
GCCAGCACTCGCATCTGCGGTGACTTTCCGCCGAAGGCATTCGAATTCGC
CCTTGCCGACCCTCCTTCCACCCCAAAACCCTATCCTGCGGCGCTGCATT
TGCACGCCCCCTGGTAAGCCGGCATCTGCTCCGGGATTACGAGATGTTAG
TTCCATTGTCCTTTTACATGGTGTGGTGGGCTGGTCGGGGTGTGCGGCTG
TTGCAACGCACGGATCATGGCACCATACCGATATTGGTCTTGAAGAAACA
CTTTCCACCACAGTTCACTAGTTCTTGGCGGGAAACTACAAGAGCTTGCC
AAAGGCGCCCTGGCACATGATGAAACCACGCAGGAAATATTGGTGGAGCT
GCGCGGTTTCAGAGCATAATTTCTGCCGCTCTTGATCGTTTGGGCCATGT
CAATATGTGCGCCGGTATCTTGTGCTTCCAAGTATTAGATCCATAGGGTA
CTTCAATGGGAATGGGATTAGTTTATTCGCCCATCTGTAAGTAACCTCAC
TTGGCCTACCCGAGTGTATATAATGTATCTAAACCATACATACAACATAT
TCAAAGCACTTAACCCTTTTACCCCTGGGGTCCAAATAATCACAGTGTTT
TAGTGTGTAGGTCCAATTTAGCAGGGGTAAAAGGGTTAAGTTGAGCAGGG
CACCACAGGGTCCCAGTGGGAGAGCTTCCCGCTACATACAACAGTGAAGG
TTGTTGACACGGTGGCTTCGGGCGCGTTGGGGCGTCTGGCCCTGCTGGAG
GCTATCGCCGCTTGGCCCGTGGCAATGGCCTCGGGGTAATTGAGGTAACT
CGATTGGATTTCAAGTCATTGTGTTGCGACAACTACTTTGGGCTCTTTAG
CTACAGTTACGTATACTTGGAAGCACAAAGTACAGACGGAAGTACTTCGA
AGTAGTTCTGGAGTATGTACTTCTGTGTACTGTAGTTGCGGAGGTGAAGG
GAATCTGCGCATTGCATGCTTTGCTGCCTTTCAGCGATGCCTGACTCTTG
TTGAAATTTCACCGCATCGTGTCCTGCAACAGTGCACACCATACTCGAGT
GCTGTGTACACATATGGCACCAAAGCGTACCGCTGTTCCCTTTGCCCACC
ACGGGCTACATTGTTCGTTCCCTGCGGCACTTCATACAGGCTGCAGCAGG
TCATCGGCACCATGGACAACAGCCAGGCGGGCGCGCCCCTTCTCCAAAGT
GACAACCCCCTGCACGAAGCAGGAGCTATACTCTCCCTAGTCTTCGAGTA
CACCCCAACGAAGGGGTTCTTGTTCATGGGCGGGGTGTCGCGTGCTTGGC
GGGCATTGTGGGTGGAATCGCGCCGGCCCATCACGAGTTTGGCCCAGGCC
ACGGCTTCTTTGCCCCGCCTGCAATGGGCGAGGGCGTTCGGGTGGCCGGT
GCATTGGGACCTTCGCATTTGCCCGCAGGCCGCAGAGGCAGGGAACCTTG
AGGTCTTAAAGTGGGCCAGGGCAAACGGTGGCCCCTGGAACGACACCTGT
TCCGCGGCCGCCCGGGCTGGCCATCTTGAGGTGCTGCAGTGGGCCAGGGC
CAATGGGTGCCCCTGGGATGAGATGACCTGCTCTTGCGCCGCAAAGGAGG
GGCATCTCAGGGTACTGCAGTGGGTCAGGGCCAGCGGGTGTCCCTGGGAC
AAGTGGACCTGCTGTTGGGCCGCTAGAGGAGGCCATCTCGAGGTATTGCA
GTGGGCAAGGGCTAATGGGTGCCCCTGGGACGTGGTCACCTGCTGTTGGG
CCGCTAGATGGGGACATCTCGAGGTACTGCAGTGGGCCAGGGCTAACGGT
TGCCCCTGGGATGCAATGATCTGCTCTTGGGCCGCTAGTGAGGGGCATCT
TGAGGTACTGCAGTGGGCCAGGGCTAACGGGTGCCCGTGGCATGAGGGCA
CCTGTGCCTCGGCCGCTGCACGGGGACATCTCGAGGTACTGCAGTGGGCA
AGGGCTAGCGGCTGCCCCTGGGACCACAGGACTGTAGAGCATGCCCGAAT
GCATGGGCATGAAAATGTGGTGGAGTGGGCCAGGGCCAACGGTTGTCCAG
AGGATGGCGAGGAATGAGATTGGGTGAAGCTGTGTTGACTCGATGTAGCC
TGTTGCTAGTATCAATGGTTGGCATCAAGTCGTATCGGGCGGAACCTGCG
CGGGAATTTCGTCCTGGACATTCTTAGGTTGTCAGTATACTGTTGGTATT
CTGCCCTTTACCTGCAGTGATATTGCTCATGTACCAGCATACTTCAAGTT
GTGTATATGGTATCCTCTGTATCATGTTGTGTGTCAACCAGTGGGTGTGT
TCCCGTACAGTACCTCGATAAATAACACGAAGCTCGTTGCTTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3348019..3351061+

>mRNA_S-ischiensis_contig8.19719.1 ID=mRNA_S-ischiensis_contig8.19719.1|Name=mRNA_S-ischiensis_contig8.19719.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1812bp|location=Sequence derived from alignment at S-ischiensis_contig8:3348019..3351061+ (Schizocladia ischiensis KU_0333)
ATGGACAACAGCCAGGCGGGCGCGCCCCTTCTCCAAAGTGACAACCCCCT
GCACGAAGCAGGAGCTATACTCTCCCTAGTCTTCGAGTACACCCCAACGA
AGGGGTTCTTGTTCATGGGCGGGGTGTCGCGTGCTTGGCGGGCATTGTGG
GTGGAATCGCGCCGGCCCATCACGAGTTTGGCCCAGGCCACGGCTTCTTT
GCCCCGCCTGCAATGGGCGAGGGCGTTCGGGTGGCCGGTGCATTGGGACC
TTCGCATTTGCCCGCAGGCCGCAGAGGCAGGGAACCTTGAGGTCTTAAAG
TGGGCCAGGGCAAACGGTGGCCCCTGGAACGACACCTGTTCCGCGGCCGC
CCGGGCTGGCCATCTTGAGGTGCTGCAGTGGGCCAGGGCCAATGGGTGCC
CCTGGGATGAGATGACCTGCTCTTGCGCCGCAAAGGAGGGGCATCTCAGG
GTACTGCAGTGGGTCAGGGCCAGCGGGTGTCCCTGGGACAAGTGGACCTG
CTGTTGGGCCGCTAGAGGAGGCCATCTCGAGGTATTGCAGTGGGCAAGGG
CTAATGGGTGCCCCTGGGACGTGGTCACCTGCTGTTGGGCCGCTAGATGG
GGACATCTCGAGGTACTGCAGTGGGCCAGGGCTAACGGTTGCCCCTGGGA
TGCAATGATCTGCTCTTGGGCCGCTAGTGAGGGGCATCTTGAGGTACTGC
AGTGGGCCAGGGCTAACGGGTGCCCGTGGCATGAGGGCACCTGTGCCTCG
GCCGCTGCACGGGGACATCTCGAGGTACTGCAGTGGGCAAGGGCTAGCGG
CTGCCCCTGGGACCACAGGACTGTAGAGCATGCCCGAATGCATGGGCATG
AAAATGTGGTGGAGTGGGCCAGGGCCAACGGTTGTCCAGAGGATGGCGAG
GAATGAATGGACAACAGCCAGGCGGGCGCGCCCCTTCTCCAAAGTGACAA
CCCCCTGCACGAAGCAGGAGCTATACTCTCCCTAGTCTTCGAGTACACCC
CAACGAAGGGGTTCTTGTTCATGGGCGGGGTGTCGCGTGCTTGGCGGGCA
TTGTGGGTGGAATCGCGCCGGCCCATCACGAGTTTGGCCCAGGCCACGGC
TTCTTTGCCCCGCCTGCAATGGGCGAGGGCGTTCGGGTGGCCGGTGCATT
GGGACCTTCGCATTTGCCCGCAGGCCGCAGAGGCAGGGAACCTTGAGGTC
TTAAAGTGGGCCAGGGCAAACGGTGGCCCCTGGAACGACACCTGTTCCGC
GGCCGCCCGGGCTGGCCATCTTGAGGTGCTGCAGTGGGCCAGGGCCAATG
GGTGCCCCTGGGATGAGATGACCTGCTCTTGCGCCGCAAAGGAGGGGCAT
CTCAGGGTACTGCAGTGGGTCAGGGCCAGCGGGTGTCCCTGGGACAAGTG
GACCTGCTGTTGGGCCGCTAGAGGAGGCCATCTCGAGGTATTGCAGTGGG
CAAGGGCTAATGGGTGCCCCTGGGACGTGGTCACCTGCTGTTGGGCCGCT
AGATGGGGACATCTCGAGGTACTGCAGTGGGCCAGGGCTAACGGTTGCCC
CTGGGATGCAATGATCTGCTCTTGGGCCGCTAGTGAGGGGCATCTTGAGG
TACTGCAGTGGGCCAGGGCTAACGGGTGCCCGTGGCATGAGGGCACCTGT
GCCTCGGCCGCTGCACGGGGACATCTCGAGGTACTGCAGTGGGCAAGGGC
TAGCGGCTGCCCCTGGGACCACAGGACTGTAGAGCATGCCCGAATGCATG
GGCATGAAAATGTGGTGGAGTGGGCCAGGGCCAACGGTTGTCCAGAGGAT
GGCGAGGAATGA
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