mRNA_S-ischiensis_contig8.19716.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19716.1
Unique NamemRNA_S-ischiensis_contig8.19716.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: D7FUQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ5_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 5.080e-73
Identity = 123/194 (63.40%), Postives = 140/194 (72.16%), Query Frame = 2 
Query:  251 ETWRREAEKWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQGGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPWMAY 832
            E W+  A  W+ WDPN  TRA V+  ++ GD +      MGKRLAFGT+GLRG MGPG+ R+NDLVVIQT+QGL RYLE   GE  +  GVVIG DHR QGG+SS GFA LAASVF+S G+RV L    V TP+VA  V    ACAGVMVTASHNP+ DNGYKVYW NG+QIIPPHD GIAASI   LEPW  Y
Sbjct:   97 EVWQA-ARTWVNWDPNEWTRAIVQGWIENGDLDSARRGLMGKRLAFGTSGLRGVMGPGFCRINDLVVIQTSQGLCRYLEKEGGEEFKSRGVVIGRDHRQQGGLSSAGFANLAASVFISRGFRVFLMDGTVATPLVAFGVSQTKACAGVMVTASHNPKKDNGYKVYWGNGSQIIPPHDAGIAASIARNLEPWQLY 289
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: A0A6H5K128_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K128_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.210e-68
Identity = 122/193 (63.21%), Postives = 140/193 (72.54%), Query Frame = 2 
Query:  251 ETWRREAEKWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQGGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPWMA 829
            E W+  A  W+ WDPN  TRA V+  ++ GD +      MGKRLAFGT+GLRG MGPG+ R+NDLVVIQT+QGL RYLE   GE  +  GVVIG DHR QGG+SS GFA LAA+VF+S G+RV L    V TP+VA  V    ACAGVMVTASHNP+ DNGYKVYW NG+QIIPPHD GIAASI   LEPW A
Sbjct:   96 EVWQA-ARTWVKWDPNEWTRAIVQGWIENGDLDSARRGLMGKRLAFGTSGLRGEMGPGFCRINDLVVIQTSQGLCRYLEKEGGEEFKSRGVVIGRDHRQQGGLSSAGFANLAAAVFISRGFRVFLMDGTVATPLVAFGVSHTKACAGVMVTASHNPKKDNGYKVYWGNGSQIIPPHDAGIAASIARNLEPWQA 287
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: A0A812Z5I6_9DINO (Pgm2 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Z5I6_9DINO)

HSP 1 Score: 212 bits (539), Expect = 4.430e-65
Identity = 105/189 (55.56%), Postives = 133/189 (70.37%), Query Frame = 2 
Query:  257 WRREAEKWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQGGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPW 823
            WR  AE W  WDPN +T+A + +LL AG++ +L  + +G RL FGTAGLRGPMG G  RMNDLVV+QTTQG+  YL+  A    ++ GV IG DHRA GG +S  FA  AA VFL  G+ V+L+ + V TP+V  C+  +   AG+M+TASHNP+ DNGYK+YW+N AQIIPPHD  IAA I+E L PW
Sbjct:   10 WRLWAETWARWDPNQATKAELLQLLAAGEDAELRRV-LGSRLEFGTAGLRGPMGMGSCRMNDLVVLQTTQGVCAYLKEVADSDAKQRGVCIGFDHRAGGGCNSRSFAECAARVFLEEGFTVYLYRDFVATPMVPWCMEQRRCVAGIMITASHNPKADNGYKLYWSNAAQIIPPHDAKIAALIEENLAPW 197
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: A0A5D6XYC6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYC6_9STRA)

HSP 1 Score: 228 bits (582), Expect = 2.720e-64
Identity = 116/192 (60.42%), Postives = 138/192 (71.88%), Query Frame = 2 
Query:  257 WRREAEKWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQGGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPWMAY 832
            W   A++W+AWD N  TRAAV+ LLDAGD  QL  +F G RL FGTAGLR  MGPG   MNDLVV+QTTQG+ +YL    GE  +  G  IG+DHRA+  +SS+ FA LAA+V ++ G RV+L+   V TP+V  C+  KG   GVMVTASHNP+ DNGYKVYWANG+QIIPPHD GIAASI E L PW AY
Sbjct:  865 WIAAAQQWVAWDMNAGTRAAVQALLDAGDVAQLRALFDG-RLEFGTAGLRAAMGPGTKMMNDLVVVQTTQGICKYLTREFGERSKSMGFAIGYDHRAKDSLSSKRFAELAAAVCVAHGIRVYLYEGFVATPLVPFCIEQKGCAGGVMVTASHNPKADNGYKVYWANGSQIIPPHDEGIAASILENLAPWHAY 1055
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: A0A2D4C2D5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2D5_PYTIN)

HSP 1 Score: 213 bits (541), Expect = 6.710e-62
Identity = 109/189 (57.67%), Postives = 133/189 (70.37%), Query Frame = 2 
Query:  269 AEKWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREA-GVVIGHDHRAQGGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPWMAY 832
            A++WL WD N  T+A V++ +DA D   L  +F G RL FGTAGLR  MGPG   MNDLV+IQTTQG+ RYL    GE   +  GV IG+DHRA G ++S+ FA L A+V + AG++V+L+   V TP+V  C+  K   AGVMVTASHNP+ DNGYKVYWANG+QIIPPHD GIAASI E L PW  Y
Sbjct:   11 AQQWLEWDVNHGTKALVQQYVDARDMPMLRKLFNG-RLEFGTAGLRAAMGPGTTAMNDLVIIQTTQGICRYLVQVFGEAEAQRRGVAIGYDHRAAGTLNSKRFAELTAAVCVHAGFKVYLYEGFVATPLVPFCIERKQCVAGVMVTASHNPKADNGYKVYWANGSQIIPPHDAGIAASILENLAPWTTY 198
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: A0A662WHP8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHP8_9STRA)

HSP 1 Score: 209 bits (533), Expect = 9.230e-60
Identity = 107/197 (54.31%), Postives = 133/197 (67.51%), Query Frame = 2 
Query:  251 ETWRREAEKWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQGGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVA---HCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPWMAY 832
            E W   A++WL WD N  T+A V  L+ A D  +L  +F G R+AFGTAGLR  MGPG   MNDLVVIQTTQG+ +YL    G+  +  GVV+G+DHR QG ++S+ FA L A+V +  G +V L+   V TP+V     C+  KG  AGVMVTASHNP+ DNGYKVYW+NG+QIIPPHD GIAA I+  L PW  Y
Sbjct:    7 EQWLAAAQQWLDWDVNAGTKALVAALIAARDTSRLCELF-GTRVAFGTAGLRAVMGPGPAAMNDLVVIQTTQGICKYLTRVFGDQAKSMGVVVGYDHRQQGSLNSKRFAELTAAVCVHYGIKVFLYEGFVATPLVVCAPFCIEQKGCAAGVMVTASHNPKADNGYKVYWSNGSQIIPPHDAGIAAEIESNLAPWRVY 202
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: Q6DFA0_XENLA (Pgm2l1-prov protein n=4 Tax=Xenopus TaxID=8353 RepID=Q6DFA0_XENLA)

HSP 1 Score: 209 bits (532), Expect = 1.180e-59
Identity = 105/184 (57.07%), Postives = 133/184 (72.28%), Query Frame = 2 
Query:  278 WLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQ--GGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPW 823
            W+ WD NP T A V++++  G +E+L   F G R+ FGTAGLR  MGPG  +MNDL +IQTTQG  RYLE +  +  +E GVVIG+D RA    G SS+ FARLAA+ F+S G +V++F ++ PTP V + V     CAG+MVTASHNP+ DNGYKVYW NGAQIIPPHD+GIA SI++ LEPW
Sbjct:   20 WIKWDKNPKTLALVKQMVADGKKEELQACF-GSRMEFGTAGLRAAMGPGISQMNDLTIIQTTQGFCRYLEKNISD-LKERGVVIGYDARAHPASGGSSKRFARLAATTFVSQGIKVYMFSDITPTPFVPYAVTHLNLCAGIMVTASHNPKQDNGYKVYWENGAQIIPPHDSGIAQSIEKNLEPW 201
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: UPI00085430A1 (phosphoglucomutase-2 n=2 Tax=Ranoidea TaxID=30352 RepID=UPI00085430A1)

HSP 1 Score: 208 bits (529), Expect = 3.010e-59
Identity = 110/189 (58.20%), Postives = 131/189 (69.31%), Query Frame = 2 
Query:  263 REAEKWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQ--GGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPW 823
            R AE WL  D NP T   V++L+   ++E+L   F G R+ FGTAGLR  MGPG  RMNDL +IQTTQG  RYLE    +  +E GVVIG+D RA    G SS+ FARLAA+ F+S G  V+LF  + PTP V + V     CAG+MVTASHNP+ DNGYKVYW NGAQIIPPHDTGIA SI+E L+PW
Sbjct:   11 RAAEHWLKCDKNPKTSELVKQLVSEKNKEELKKCF-GARMEFGTAGLRAAMGPGVSRMNDLTIIQTTQGFCRYLEKSISD-LKERGVVIGYDARAHPASGGSSKRFARLAATAFISQGVPVYLFSSITPTPFVPYTVTHLNLCAGIMVTASHNPKQDNGYKVYWENGAQIIPPHDTGIAQSIEENLDPW 197
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: W2LLC0_PHYPR (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2LLC0_PHYPR)

HSP 1 Score: 207 bits (527), Expect = 6.210e-59
Identity = 102/194 (52.58%), Postives = 131/194 (67.53%), Query Frame = 2 
Query:  251 ETWRREAEKWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQGGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPWMAY 832
            E W  EA++W  WD N  T+A V +L+ A D  ++  +F G R+AFGTAGLR  MGPG   MNDLVVIQ +QG+ +YL    G+  +  GV +G+DHR    +SS+ FA L A+V L  G++V+L+   V TP+V  C+  KG  AGVMVTASHNP+ DNGYKVYW+NG+QIIPPHD GIA+ I   L PW  Y
Sbjct:    7 EQWLAEAQQWAEWDVNAGTKAQVEQLVAAKDVARIRELF-GSRVAFGTAGLRAVMGPGPAAMNDLVVIQASQGICKYLTQQFGDRAKSMGVALGYDHRQHETLSSKRFAELTAAVCLHYGFKVYLYEGFVATPLVPFCIEQKGCAAGVMVTASHNPKADNGYKVYWSNGSQIIPPHDEGIASEIMTNLAPWRLY 199
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BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Match: A0A1S3QPS8_SALSA (phosphoglucomutase-2 n=12 Tax=Salmonidae TaxID=8015 RepID=A0A1S3QPS8_SALSA)

HSP 1 Score: 207 bits (526), Expect = 9.310e-59
Identity = 108/185 (58.38%), Postives = 129/185 (69.73%), Query Frame = 2 
Query:  275 KWLAWDPNPSTRAAVRELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQGLVRYLELHAGEGRREAGVVIGHDHRAQ--GGVSSEGFARLAASVFLSAGYRVHLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQIIPPHDTGIAASIKECLEPW 823
            +WL +D NP T A V+ L++ G  E+L   F G R+ FGTAGLR  MGPG   MNDL +IQTTQG  +YLE   GEG +E GVV+G D RA    G SS+ FA LAA+VF+S G  VHLF ++ PTP V   V   G CAGVMVTASHNP+ DNGYKVYW NGAQI+PPHD GI+ +I+  LEPW
Sbjct:   19 QWLQFDKNPQTVALVQGLVEDGAVEELRRCF-GSRMEFGTAGLRAAMGPGISCMNDLTIIQTTQGFCKYLEHCFGEGLKERGVVVGFDARAHPPSGGSSKRFASLAAAVFISRGVPVHLFCDITPTPFVPFAVSHLGLCAGVMVTASHNPKQDNGYKVYWENGAQIVPPHDKGISVAIEANLEPW 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUQ5_ECTSI5.080e-7363.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K128_9PHAE1.210e-6863.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812Z5I6_9DINO4.430e-6555.56Pgm2 protein (Fragment) n=1 Tax=Symbiodinium sp. C... [more]
A0A5D6XYC6_9STRA2.720e-6460.42Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4C2D5_PYTIN6.710e-6257.67Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662WHP8_9STRA9.230e-6054.31Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
Q6DFA0_XENLA1.180e-5957.07Pgm2l1-prov protein n=4 Tax=Xenopus TaxID=8353 Rep... [more]
UPI00085430A13.010e-5958.20phosphoglucomutase-2 n=2 Tax=Ranoidea TaxID=30352 ... [more]
W2LLC0_PHYPR6.210e-5952.58Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]
A0A1S3QPS8_SALSA9.310e-5958.38phosphoglucomutase-2 n=12 Tax=Salmonidae TaxID=801... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3331167..3335179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.1
Seed ortholog evalue6.2e-61
Seed eggNOG ortholog2880.D7FUQ5
Preferred nameGPM2
KEGG rclassRC00408
KEGG koko:K01835,ko:K15779
KEGG ReactionR00959,R01057,R02749,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
GOsGO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006139,GO:0006148,GO:0006152,GO:0006166,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008617,GO:0008973,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019318,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042451,GO:0042454,GO:0042455,GO:0043094,GO:0043101,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046102,GO:0046115,GO:0046128,GO:0046129,GO:0046130,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
EggNOG free text desc.alginic acid metabolic process
EggNOG OGsCOG1109@1,KOG1220@2759
EC5.4.2.2,5.4.2.7
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha-D-phosphohexomutase, alpha/beta/alpha domain II
Ec32 orthologEc-19_004310.1
Exons4
Model size871
Cds size852
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19716.1prot_S-ischiensis_contig8.19716.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3331186..3335179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817298.822693-UTR-S-ischiensis_contig8:3331166..33311851622817298.822693-UTR-S-ischiensis_contig8:3331166..3331185Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3331167..3331185 +
1695741006.722194-UTR-S-ischiensis_contig8:3331166..33311851695741006.722194-UTR-S-ischiensis_contig8:3331166..3331185Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3331167..3331185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817298.835161-CDS-S-ischiensis_contig8:3331185..33315361622817298.835161-CDS-S-ischiensis_contig8:3331185..3331536Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3331186..3331536 +
1695741006.7362232-CDS-S-ischiensis_contig8:3331185..33315361695741006.7362232-CDS-S-ischiensis_contig8:3331185..3331536Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3331186..3331536 +
1622817298.8482988-CDS-S-ischiensis_contig8:3331685..33318651622817298.8482988-CDS-S-ischiensis_contig8:3331685..3331865Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3331686..3331865 +
1695741006.7511673-CDS-S-ischiensis_contig8:3331685..33318651695741006.7511673-CDS-S-ischiensis_contig8:3331685..3331865Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3331686..3331865 +
1622817298.860034-CDS-S-ischiensis_contig8:3333837..33340261622817298.860034-CDS-S-ischiensis_contig8:3333837..3334026Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3333838..3334026 +
1695741006.7613494-CDS-S-ischiensis_contig8:3333837..33340261695741006.7613494-CDS-S-ischiensis_contig8:3333837..3334026Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3333838..3334026 +
1622817298.870919-CDS-S-ischiensis_contig8:3335047..33351791622817298.870919-CDS-S-ischiensis_contig8:3335047..3335179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3335048..3335179 +
1695741006.771271-CDS-S-ischiensis_contig8:3335047..33351791695741006.771271-CDS-S-ischiensis_contig8:3335047..3335179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3335048..3335179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19716.1

>prot_S-ischiensis_contig8.19716.1 ID=prot_S-ischiensis_contig8.19716.1|Name=mRNA_S-ischiensis_contig8.19716.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=284bp
MPGAMRHLFCVFVGRAGMKSQAQVAGGVIVGLGVALSLAVAVKALPSRLN
GSRSSRCTPRALRANAVPGEAKTSERRETWRREAEKWLAWDPNPSTRAAV
RELLDAGDEEQLTNMFMGKRLAFGTAGLRGPMGPGYGRMNDLVVIQTTQG
LVRYLELHAGEGRREAGVVIGHDHRAQGGVSSEGFARLAASVFLSAGYRV
HLFGELVPTPVVAHCVRLKGACAGVMVTASHNPRTDNGYKVYWANGAQII
PPHDTGIAASIKECLEPWMAYGRPRRGGSREGSG
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mRNA from alignment at S-ischiensis_contig8:3331167..3335179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19716.1 ID=mRNA_S-ischiensis_contig8.19716.1|Name=mRNA_S-ischiensis_contig8.19716.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4013bp|location=Sequence derived from alignment at S-ischiensis_contig8:3331167..3335179+ (Schizocladia ischiensis KU_0333)
CTTCGACCCGTGCTCTCTTATGCCGGGAGCAATGCGCCATCTTTTCTGTG
TCTTTGTGGGTCGTGCAGGCATGAAAAGCCAGGCACAGGTGGCCGGCGGG
GTGATCGTGGGCTTGGGAGTCGCTCTTTCTCTCGCCGTGGCCGTAAAAGC
ACTCCCATCGCGACTGAACGGCAGCAGAAGTAGTAGATGCACGCCTCGAG
CTCTCCGGGCGAACGCTGTCCCTGGAGAGGCAAAGACCAGCGAGCGGCGC
GAGACTTGGAGACGAGAAGCTGAAAAGTGGTTGGCATGGGACCCCAACCC
TTCCACTCGCGCCGCGGTGCGGGAACTGCTGGATGCAGGCGACGAGGAGC
AGCTCACGAACATGTTCATGGTGAGAAAGACCAGGCATGCAGGTTGCTTT
GTAGCACCAGGTGTGCTTGGTCGTCCAGCTACCTGGAAAAGCTCCTGAAC
TTTTGGCCCTCAGCTGCTGAAAAGCTCGCAACTGCCCCGTCCCGGCCCGT
CATCCCCCCGTCCACGCAGGGCAAGCGTCTGGCCTTCGGCACCGCGGGCC
TGCGAGGGCCCATGGGCCCGGGCTACGGGAGGATGAACGATCTCGTGGTC
ATTCAAACCACTCAGGGCCTCGTCCGCTACCTGGAGCTGCACGCGGGGGA
GGGCCGCCGTGAAGCCGGCGTGGTAATCGGGCATGACCACCGGGCGCAGG
TGAGAGAGATGGTCCTGACTTTGGAAGGCGTTGCCCCCCCAGTTTCTCCG
CCGCAGATCTGGTTCGCCTGCGCCGGCGCACCTCCGGGGGCACCCTCAAT
CCTCGGGCTGCCAGATTGCCGGACGGAATACGCCTGGGTTGTCTGAGCGT
GCTTTGCCTGTGCGCCAGTGTCTCTGAGTGGCCTTGTGCATCCAACATTC
GATGGAGAGCGCATGCCTGCGTCGGACGCACCCTTCTGATAGCGAGTCAC
AGGACGCTGATCGAGGCGCCTGTAACGGTACGGTTGGGAGGAAGCGCTCG
CCTCGGGCCTGGTGTAGCCCAGAGACCGACGGGCTCCCGCTTCGCGTCAC
GACCGCCACAGCGACACTCGCGTAGATCACTACGTACGAAGCCTCGCTCG
GCTTGTCAGGCGTTAATACAGCTCTATAAATAAGGTACTTCGAATATGTG
TGTATACTTCGAAGCATGAGTGTGCTGTACTGTACTGTGCTACATAGTAC
TGTGCTGCACTGCGCTGTACGGTACTACCCGACTACTGTAAACTACTCTG
GCACCCTGTGTTTGCACGTGTATGTTCAATGGTCTCGGGACTACGGCAAG
CACAACTTGAGTGTATATATACTACTGTATATGCCTAGCCGACAAACAAC
TCGTACGCCGAGTGAAGCCTCGTAGTCGATGAAGCGCTGTGGTTTGCCGG
AGTGACCGAGCCTGTGAGTATTGCGCACGCATTCATCGAGAAAGCCAATT
GAGTACCGTAATTGTCGGAGAGATGTTGCCCCCATGGGACAATTTTTGGA
GAATATTTCTTGCCGGAAGGTCCCGGATTGTCCCGAAAGCCCTCGGAAAA
GTTCCCCCAGGTCCTGAGGGTGATTTTCCGAGTTTCCTGCGCAAATCCGA
CCAGTATTCGGCGAGAAAAGTTCTCCCGAACATTGGCATGGGGGGGCCAG
ATCTCTCCGGCGGCTACGGTACTCACACACATATATACAGTACTGCTTAC
TGCAGTAGCGGGGGAGACTTGAGTTCCGAGAACCCAACTAGTTAGCGGAC
TCAGTTTCAAGACACCCGAGTAGCTAAGAGACTCGGATTCCGATGCGAAT
CGGAGAGAACGGCCCTCTAGACGGGGGCTGTAGGATGAAGGCGGCGGCAA
CAGATCGGCCTCTTCTTCTTTGTTGGGGTGTTGTGTACTGAACCCCCCCG
ACAGCATTTTCGACTTTATAACTACAGCAGTTCCTCTGTAGAGTAGAGCA
CTCTACTATTCCTACTGCTCCACCCCCGCCCCTTCCCGACACTCCCCCCT
TCCCTGGCGAGCTAAGGGAGGCGTTTACCACTGTTGAGGCCTTTGCTGAC
CAACGTGGCCTGCCGCTCGCCCTGCGTTTCTCCTGTTGCTGCCGCTGCTC
TGTCTCAGTCGAGGCGCTGTCGGTGTTAATGGTCTCGGGACTACGGCAAG
CACAGCGTGCGTTCACATATGTACTTCGTACTTCGAAGTGTATACACCGT
ATGCTCCCGAGTACTACTGTACTGTACTCGTGCTACTGTACTACTGTACT
TGCCACTGTACTGCACTCGGAAGTGCGTACAACCGCCAAGTTACCCGTGG
CACTTGTAGATGTGGGGGATATTTGCCTCAAAATCGGGAAGTTGACGGGT
GAGGAGAGCCCGGCACAGAAGGGGCGGCGGGCAACAGCAAGAGGGCATAG
CCTCTACTTCCGCCCCGAAAACAGGACACAGTGCTCCGTCCCATGTTGTA
GGTCACCCCTGTCATGCGATGTGATGTGATGTCAAACTACAGCACTTTAG
AGTGCACATCACATCACATCACATCACATCCCATAGGGCCACCCCCGTGG
GACGCGTGGCCAACGGCGATATGGCTACGGCAGGCGGCAACTCATGAGTG
CCCCCCCCCCCCTTCTGCACCGCCACGGCGGGGTCGTGCATACAAAAATA
ACACGAAAACAACAAACAAAGGGAGGCGTGTCCTCCGAGGGGTTTGCACG
CCTGGCTGCGTCCGTGTTCTTGTCGGCGGGGTACCGGGTGCACCTGTTTG
GGGAGCTGGTGCCGACGCCGGTGGTGGCGCACTGCGTGCGCCTCAAGGGG
GCGTGCGCGGGGGTCATGGTGACGGCCTCGCACAACCCCAGGACGGACAA
CGGCTACAAGGTGTGAGAAGGGTTCGTGTGTGTGTGTGTGTGTGTGTGCA
CGCGCGTGCGTGCGTGCATGGGTGTGTTTGTGCGTGTGCATGTGTGCGTG
TGTGAGTTTGTTTGTTATCTACTGTAGTCTACATGCCCGTGTGCCCTGCG
TGGATCGGGTCTCGTTATTTTTTGTCACGCGCGTCTGTGCTCGCACTGCT
TAGGTACTCACGGAGCATGTTCGTACGGTGCTTCCGAGTACTTAGTATTC
AAGCGCTTTGCTACACCTTGTGCATGGTTGTGGCCCTTGTCAGAGGTGTG
CCCCCCCCCCGCTGGCTCTGTCAGGGGAGGGAGGGGGCCTTCTCCATCCC
AGTCGAGGCGCTATACTTAGGGGTGAATGGTGTCGGGATGACGGCAGGCA
CTGTTAGGTGCGAGTACACACACACACATGCTTAAAAGTATATGCATGTA
CTCCTATGTATGCACGCTGCTGCTGCGTGTCATCGAACGATCGGCTCGGT
AAATCCGGAGCTTTCCCGTGTCCTTTCCCGGGGCCGACGCGATCGGCTTG
TTTTAGGGATTGACCGGCGAAAGGATATCTACTACTGTACGAGTACTGTG
CCACTGTACAATACTCAAACTATACGTGCGATTGCAGATTGTTCATTTAT
CGAGTGTTTTGCCCTCAAATGTTGCGAGCCGTGTGCACAATGACCTTGTG
ACACACACAGGATACGAGCATATAGGAAGTACTTATGGTACAAGCAGTGG
TGGCTACCCAGGCCCCCATCCCCTTCCACTAGTAGTACCCACCCCGCCCA
CCCCCAAATGCCCCGCCCCCAGGCTCTCCACCGCCACCACCACCACCTTG
TGCCATCTCCGCTGCTCCAAATACGCGCCGTTCCCCCTCCTCCCCCCTCT
TCCTTCCTTCCATGCCCCTCCCGCCCTCTGTCCCTCTCTCTCTCCTCTTC
TCGCCCACTCCCTCCCCTCCCGCCCTCCCGCACACTCCCCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCCCCCCCCCAGGTTTACTGGGCAAACGGTG
CCCAGATCATCCCCCCACACGACACCGGCATCGCAGCGTCCATTAAGGAG
TGCCTAGAGCCCTGGATGGCCTACGGACGTCCCCGTAGAGGTGGCAGCCG
TGAGGGCAGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3331167..3335179+

>mRNA_S-ischiensis_contig8.19716.1 ID=mRNA_S-ischiensis_contig8.19716.1|Name=mRNA_S-ischiensis_contig8.19716.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1704bp|location=Sequence derived from alignment at S-ischiensis_contig8:3331167..3335179+ (Schizocladia ischiensis KU_0333)
ATGCCGGGAGCAATGCGCCATCTTTTCTGTGTCTTTGTGGGTCGTGCAGG
CATGAAAAGCCAGGCACAGGTGGCCGGCGGGGTGATCGTGGGCTTGGGAG
TCGCTCTTTCTCTCGCCGTGGCCGTAAAAGCACTCCCATCGCGACTGAAC
GGCAGCAGAAGTAGTAGATGCACGCCTCGAGCTCTCCGGGCGAACGCTGT
CCCTGGAGAGGCAAAGACCAGCGAGCGGCGCGAGACTTGGAGACGAGAAG
CTGAAAAGTGGTTGGCATGGGACCCCAACCCTTCCACTCGCGCCGCGGTG
CGGGAACTGCTGGATGCAGGCGACGAGGAGCAGCTCACGAACATGTTCAT
GATGCCGGGAGCAATGCGCCATCTTTTCTGTGTCTTTGTGGGTCGTGCAG
GCATGAAAAGCCAGGCACAGGTGGCCGGCGGGGTGATCGTGGGCTTGGGA
GTCGCTCTTTCTCTCGCCGTGGCCGTAAAAGCACTCCCATCGCGACTGAA
CGGCAGCAGAAGTAGTAGATGCACGCCTCGAGCTCTCCGGGCGAACGCTG
TCCCTGGAGAGGCAAAGACCAGCGAGCGGCGCGAGACTTGGAGACGAGAA
GCTGAAAAGTGGTTGGCATGGGACCCCAACCCTTCCACTCGCGCCGCGGT
GCGGGAACTGCTGGATGCAGGCGACGAGGAGCAGCTCACGAACATGTTCA
TGGGCAAGCGTCTGGCCTTCGGCACCGCGGGCCTGCGAGGGCCCATGGGC
CCGGGCTACGGGAGGATGAACGATCTCGTGGTCATTCAAACCACTCAGGG
CCTCGTCCGCTACCTGGAGCTGCACGCGGGGGAGGGCCGCCGTGAAGCCG
GCGTGGTAATCGGGCATGACCACCGGGCGCAGGGCAAGCGTCTGGCCTTC
GGCACCGCGGGCCTGCGAGGGCCCATGGGCCCGGGCTACGGGAGGATGAA
CGATCTCGTGGTCATTCAAACCACTCAGGGCCTCGTCCGCTACCTGGAGC
TGCACGCGGGGGAGGGCCGCCGTGAAGCCGGCGTGGTAATCGGGCATGAC
CACCGGGCGCAGGGAGGCGTGTCCTCCGAGGGGTTTGCACGCCTGGCTGC
GTCCGTGTTCTTGTCGGCGGGGTACCGGGTGCACCTGTTTGGGGAGCTGG
TGCCGACGCCGGTGGTGGCGCACTGCGTGCGCCTCAAGGGGGCGTGCGCG
GGGGTCATGGTGACGGCCTCGCACAACCCCAGGACGGACAACGGCTACAA
GGGAGGCGTGTCCTCCGAGGGGTTTGCACGCCTGGCTGCGTCCGTGTTCT
TGTCGGCGGGGTACCGGGTGCACCTGTTTGGGGAGCTGGTGCCGACGCCG
GTGGTGGCGCACTGCGTGCGCCTCAAGGGGGCGTGCGCGGGGGTCATGGT
GACGGCCTCGCACAACCCCAGGACGGACAACGGCTACAAGGTTTACTGGG
CAAACGGTGCCCAGATCATCCCCCCACACGACACCGGCATCGCAGCGTCC
ATTAAGGAGTGCCTAGAGCCCTGGATGGCCTACGGACGTCCCCGTAGAGG
TGGCAGCCGTGAGGGCAGCGGCGTTTACTGGGCAAACGGTGCCCAGATCA
TCCCCCCACACGACACCGGCATCGCAGCGTCCATTAAGGAGTGCCTAGAG
CCCTGGATGGCCTACGGACGTCCCCGTAGAGGTGGCAGCCGTGAGGGCAG
CGGC
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