mRNA_S-ischiensis_contig8.19707.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19707.1
Unique NamemRNA_S-ischiensis_contig8.19707.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3272242..3272589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.5849996-CDS-S-ischiensis_contig8:3272241..32725891622817268.5849996-CDS-S-ischiensis_contig8:3272241..3272589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3272242..3272589 +
1695740982.1389415-CDS-S-ischiensis_contig8:3272241..32725891695740982.1389415-CDS-S-ischiensis_contig8:3272241..3272589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3272242..3272589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19707.1prot_S-ischiensis_contig8.19707.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3272242..3272589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19707.1

>prot_S-ischiensis_contig8.19707.1 ID=prot_S-ischiensis_contig8.19707.1|Name=mRNA_S-ischiensis_contig8.19707.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=116bp
MAEVFPPPSHPGSALRCFEVVSDADAPPLASVSRGTTAAHAAAALLPQPS
PFLLAATRQEPPKPEDIADKPLLDFCTGHVSHLPRVPKKKEEEGKEKGKE
TGKGKGKPEAAGRGGG
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mRNA from alignment at S-ischiensis_contig8:3272242..3272589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19707.1 ID=mRNA_S-ischiensis_contig8.19707.1|Name=mRNA_S-ischiensis_contig8.19707.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=348bp|location=Sequence derived from alignment at S-ischiensis_contig8:3272242..3272589+ (Schizocladia ischiensis KU_0333)
ATGGCGGAAGTGTTCCCCCCCCCCTCCCACCCCGGCTCTGCGTTACGCTG
TTTTGAGGTCGTGAGTGATGCGGACGCGCCTCCCTTGGCATCCGTTTCCC
GTGGTACAACCGCAGCGCATGCAGCAGCAGCACTGCTTCCCCAACCCTCC
CCCTTTCTTCTCGCGGCGACTAGACAGGAGCCCCCCAAGCCGGAAGACAT
TGCGGACAAGCCCCTCCTCGACTTCTGCACGGGACACGTCAGCCATCTCC
CACGCGTTCCCAAGAAGAAGGAAGAGGAGGGCAAGGAGAAGGGGAAGGAG
ACGGGAAAGGGAAAGGGCAAGCCCGAGGCTGCCGGCCGCGGCGGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3272242..3272589+

>mRNA_S-ischiensis_contig8.19707.1 ID=mRNA_S-ischiensis_contig8.19707.1|Name=mRNA_S-ischiensis_contig8.19707.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=696bp|location=Sequence derived from alignment at S-ischiensis_contig8:3272242..3272589+ (Schizocladia ischiensis KU_0333)
ATGGCGGAAGTGTTCCCCCCCCCCTCCCACCCCGGCTCTGCGTTACGCTG
TTTTGAGGTCGTGAGTGATGCGGACGCGCCTCCCTTGGCATCCGTTTCCC
GTGGTACAACCGCAGCGCATGCAGCAGCAGCACTGCTTCCCCAACCCTCC
CCCTTTCTTCTCGCGGCGACTAGACAGGAGCCCCCCAAGCCGGAAGACAT
TGCGGACAAGCCCCTCCTCGACTTCTGCACGGGACACGTCAGCCATCTCC
CACGCGTTCCCAAGAAGAAGGAAGAGGAGGGCAAGGAGAAGGGGAAGGAG
ACGGGAAAGGGAAAGGGCAAGCCCGAGGCTGCCGGCCGCGGCGGGGGCAT
GGCGGAAGTGTTCCCCCCCCCCTCCCACCCCGGCTCTGCGTTACGCTGTT
TTGAGGTCGTGAGTGATGCGGACGCGCCTCCCTTGGCATCCGTTTCCCGT
GGTACAACCGCAGCGCATGCAGCAGCAGCACTGCTTCCCCAACCCTCCCC
CTTTCTTCTCGCGGCGACTAGACAGGAGCCCCCCAAGCCGGAAGACATTG
CGGACAAGCCCCTCCTCGACTTCTGCACGGGACACGTCAGCCATCTCCCA
CGCGTTCCCAAGAAGAAGGAAGAGGAGGGCAAGGAGAAGGGGAAGGAGAC
GGGAAAGGGAAAGGGCAAGCCCGAGGCTGCCGGCCGCGGCGGGGGC
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