mRNA_S-ischiensis_contig8.19705.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19705.1
Unique NamemRNA_S-ischiensis_contig8.19705.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: A0A6H5JXK0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.520e-28
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   52 YSEDFCAVCLDEYGGGDALLQLTCGHLFHEPCIDNWLQRNSVCPCCRADLDRLAEVAEVFPGADKSLLQDVLARTGGDANAAINLLLSHPTDEASGRGAG 351
            YS++ C+VCLD+Y  GD LLQ+TCGH+FH  CID+WL  + VCPCCR DLD+LA+V ++FP   K  LQ+ L R GG+   A+ +LL+ P  + S   AG
Sbjct:  268 YSDNSCSVCLDDYEEGDELLQVTCGHVFHRACIDHWLMAHRVCPCCRTDLDKLAQVVQLFPQISKRSLQNALTRAGGNIVLAVEILLTRPGGDGSTPDAG 367
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: D7G9H7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H7_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.270e-27
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   52 YSEDFCAVCLDEYGGGDALLQLTCGHLFHEPCIDNWLQRNSVCPCCRADLDRLAEVAEVFPGADKSLLQDVLARTGGDANAAINLLLSHPTDEASGRGAG 351
            YS++ C+VCLD+Y  GD LLQ+TCGH+FH  CID+WL+ + VCPCCR DLD+LA+V ++FP   K  LQ+ L R  G+   A+  LL+ P  + S   AG
Sbjct:  188 YSDNSCSVCLDDYEEGDELLQVTCGHVFHRACIDHWLKAHRVCPCCRTDLDKLAQVVQLFPQISKRSLQNALTRAEGNIVLAVEFLLTRPGGDGSTPDAG 287
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: T0SF38_SAPDV (RING-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SF38_SAPDV)

HSP 1 Score: 71.2 bits (173), Expect = 1.280e-11
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   46 HAYSEDFCAVCLDEYGGGDALLQLTCGHLFHEPCIDNWLQRNSVCPCCRADLDRLAEVAEVFPGAD 243
            H  ++D C +CL ++  G+ L QL+CGHLFH  CID WL +N  CP C+ DL   A+  +  P AD
Sbjct:  433 HGSADDVCPICLVDFAVGERLRQLSCGHLFHPQCIDEWLHKNFTCPMCKRDL---AQPTDTPPTAD 495
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: A0A4S8KBG1_MUSBA (RING-type domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8KBG1_MUSBA)

HSP 1 Score: 68.2 bits (165), Expect = 1.820e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   67 CAVCLDEYGGGDALLQLT-CGHLFHEPCIDNWLQRNSVCPCCRADL 201
            CAVCL E+GGGDAL  +T CGH FH  CID WL  ++ CP CR+DL
Sbjct:  117 CAVCLTEFGGGDALRTMTGCGHAFHADCIDPWLAGHATCPVCRSDL 162
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: S8D213_9LAMI (RING-type domain-containing protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D213_9LAMI)

HSP 1 Score: 65.5 bits (158), Expect = 5.380e-11
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   58 EDFCAVCLDEYGGGDALLQLTCGHLFHEPCIDNWLQRNSVCPCCR 192
            +D CAVCL+++ G  AL+QL CGH FH  C+  WL  N+ CPCCR
Sbjct:   65 QDSCAVCLEQFDGYGALMQLPCGHRFHAHCLRPWLDTNADCPCCR 109
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: A0A067D706_SAPPC (RING-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D706_SAPPC)

HSP 1 Score: 68.6 bits (166), Expect = 1.120e-10
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   46 HAYSEDFCAVCLDEYGGGDALLQLTCGHLFHEPCIDNWLQRNSVCPCCRADL 201
            H  ++D C +CL E+  G+ L QL+C HLFH  CID WL++N  CP C+ DL
Sbjct:  439 HGSADDVCPICLVEFTVGERLRQLSCAHLFHPDCIDEWLRKNFTCPMCKRDL 490
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: UPI001FB00434 (E3 ubiquitin-protein ligase RNF128a isoform X1 n=3 Tax=Hippoglossus TaxID=8266 RepID=UPI001FB00434)

HSP 1 Score: 67.4 bits (163), Expect = 2.460e-10
Identity = 34/95 (35.79%), Postives = 44/95 (46.32%), Query Frame = 1 
Query:   64 FCAVCLDEYGGGDALLQLTCGHLFHEPCIDNWLQRNSVCPCCRADL---------------DRLAEVAEVFPGADKSLLQDVLARTGGDANAAIN 303
             CAVC++ Y  GD +  LTCGH+FH+PCI+ WL     CP C+ D+               D   E   V   A    L DV     G ++ AIN
Sbjct:  264 MCAVCIESYRAGDVVTVLTCGHIFHKPCIEPWLLERRTCPMCKCDILKALGIEEERKESISDYSPEEVTVITVAGGEALYDVPLTGPGSSDPAIN 358
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: UPI0020088C57 (uncharacterized protein n=2 Tax=Purpureocillium takamizusanense TaxID=2060973 RepID=UPI0020088C57)

HSP 1 Score: 65.9 bits (159), Expect = 2.970e-10
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   67 CAVCLDEYGGGDALLQLTCGHLFHEPCIDNWLQ-RNSVCPCCRADLD 204
            C++C +++  GD L +LTCGHLFH PCID WLQ R   CP CR DL+
Sbjct:  151 CSICTEDFVEGDELRRLTCGHLFHMPCIDPWLQDRARTCPLCRVDLE 197
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BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: A0A067BVF5_SAPPC (RING-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BVF5_SAPPC)

HSP 1 Score: 64.3 bits (155), Expect = 3.340e-10
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   34 PLQQH-AYSEDFCAVCL---DEYGGGDALLQLTCGHLFHEPCIDNWLQRNSVCPCCRAD 198
            PL  H A +ED C +C+   DE    DA+L+LTCGH FHE C+ +WL +   CP CR +
Sbjct:   83 PLHSHTAPTEDACPICMCEFDELSDDDAVLELTCGHAFHESCLVHWLDKKMTCPLCRCE 141
[Close]
BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Match: A0A1V9ZFM0_9STRA (RING-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFM0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.850e-10
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   55 SEDFCAVCLDEYGGGDALLQLTCGHLFHEPCIDNWLQRNSVCPCCRADLD 204
            S D C +CL ++ G D +  L C HLFH PCID WL++N  CP C+ D++
Sbjct:  450 SADMCPICLADFKGEDEIRDLPCKHLFHVPCIDEWLRKNKTCPMCKLDIE 499
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXK0_9PHAE1.520e-2852.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G9H7_ECTSI2.270e-2751.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
T0SF38_SAPDV1.280e-1145.45RING-type domain-containing protein n=1 Tax=Saprol... [more]
A0A4S8KBG1_MUSBA1.820e-1163.04RING-type domain-containing protein n=2 Tax=Musa T... [more]
S8D213_9LAMI5.380e-1155.56RING-type domain-containing protein n=1 Tax=Genlis... [more]
A0A067D706_SAPPC1.120e-1050.00RING-type domain-containing protein n=1 Tax=Saprol... [more]
UPI001FB004342.460e-1035.79E3 ubiquitin-protein ligase RNF128a isoform X1 n=3... [more]
UPI0020088C572.970e-1057.45uncharacterized protein n=2 Tax=Purpureocillium ta... [more]
A0A067BVF5_SAPPC3.340e-1047.46RING-type domain-containing protein n=1 Tax=Saprol... [more]
A0A1V9ZFM0_9STRA3.850e-1048.00RING-type domain-containing protein n=1 Tax=Achlya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3265777..3266561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue9.2e-24
Seed eggNOG ortholog2880.D7G9H7
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-28_000960.1
Exons2
Model size446
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817298.4481764-CDS-S-ischiensis_contig8:3265777..32660301622817298.4481764-CDS-S-ischiensis_contig8:3265777..3266030Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3265778..3266030 -
1695741006.4275289-CDS-S-ischiensis_contig8:3265777..32660301695741006.4275289-CDS-S-ischiensis_contig8:3265777..3266030Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3265778..3266030 -
1622817298.4616723-CDS-S-ischiensis_contig8:3266370..32665611622817298.4616723-CDS-S-ischiensis_contig8:3266370..3266561Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3266371..3266561 -
1695741006.4417708-CDS-S-ischiensis_contig8:3266370..32665611695741006.4417708-CDS-S-ischiensis_contig8:3266370..3266561Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3266371..3266561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19705.1prot_S-ischiensis_contig8.19705.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3265778..3266561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19705.1

>prot_S-ischiensis_contig8.19705.1 ID=prot_S-ischiensis_contig8.19705.1|Name=mRNA_S-ischiensis_contig8.19705.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
EGEGGRQKQQHPLQQHAYSEDFCAVCLDEYGGGDALLQLTCGHLFHEPCI
DNWLQRNSVCPCCRADLDRLAEVAEVFPGADKSLLQDVLARTGGDANAAI
NLLLSHPTDEASGRGAGGGDSSSSNSSSNTSRSSSGRISGDALGGGEQ
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mRNA from alignment at S-ischiensis_contig8:3265777..3266561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19705.1 ID=mRNA_S-ischiensis_contig8.19705.1|Name=mRNA_S-ischiensis_contig8.19705.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=785bp|location=Sequence derived from alignment at S-ischiensis_contig8:3265777..3266561- (Schizocladia ischiensis KU_0333)
GAGGGGGAGGGAGGGCGGCAGAAGCAGCAGCACCCGCTGCAGCAGCATGC
CTATTCGGAGGACTTTTGTGCGGTGTGCCTGGACGAGTACGGGGGTGGCG
ACGCGCTGCTGCAGCTGACGTGCGGGCACCTGTTCCACGAGCCGTGCATT
GACAACTGGCTGCAGCGCAACTCCGTCTGCCCCTGCTGCCGGTGGGTGGG
AGGCGGCGGCTCTCTTTCGCTGTTTCTCTCTTCCCCCTCTGCTCTCTCTG
TTCTCTCCTGTCTCTTCTCCCATCTCTCTCCTCTCTCTCTCTCTCTTCTC
TTTTTTCCCCCCCCCCGTCCCCCCCCCCCCCCCCCAATCCCCTCCTGCCC
CCCCCCCCCCACCCCCCTTATTTCTGTATCTGCCAGGCCTGTTCTGCCTG
CAGTAACTGTCTCCTCACCTCTGCCAACGCAGCCCTCTCCGTCTCTTCGC
CCCCCTCTCACCCGCCTCCGTTCCGTTCCGTTCCCTCTCTCCTCCCCTCC
CCTCCCCTCCCTGGCGTCCGTACTTAACCAGAGCGGACCTGGACCGCTTG
GCCGAGGTGGCCGAGGTGTTCCCGGGGGCCGACAAGTCCCTCCTGCAGGA
CGTGCTGGCCCGCACCGGCGGCGACGCCAACGCCGCCATCAACCTCCTCC
TCTCCCACCCTACGGACGAGGCCAGCGGTCGTGGCGCCGGCGGCGGCGAC
AGCAGCAGCAGCAACAGCAGCAGCAACACCAGCCGCAGCAGTAGCGGCAG
AATCAGCGGTGACGCCTTGGGGGGGGGGGAACAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3265777..3266561-

>mRNA_S-ischiensis_contig8.19705.1 ID=mRNA_S-ischiensis_contig8.19705.1|Name=mRNA_S-ischiensis_contig8.19705.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig8:3265777..3266561- (Schizocladia ischiensis KU_0333)
GAGGGGGAGGGAGGGCGGCAGAAGCAGCAGCACCCGCTGCAGCAGCATGC
CTATTCGGAGGACTTTTGTGCGGTGTGCCTGGACGAGTACGGGGGTGGCG
ACGCGCTGCTGCAGCTGACGTGCGGGCACCTGTTCCACGAGCCGTGCATT
GACAACTGGCTGCAGCGCAACTCCGTCTGCCCCTGCTGCCGGAGGGGGAG
GGAGGGCGGCAGAAGCAGCAGCACCCGCTGCAGCAGCATGCCTATTCGGA
GGACTTTTGTGCGGTGTGCCTGGACGAGTACGGGGGTGGCGACGCGCTGC
TGCAGCTGACGTGCGGGCACCTGTTCCACGAGCCGTGCATTGACAACTGG
CTGCAGCGCAACTCCGTCTGCCCCTGCTGCCGAGCGGACCTGGACCGCTT
GGCCGAGGTGGCCGAGGTGTTCCCGGGGGCCGACAAGTCCCTCCTGCAGG
ACGTGCTGGCCCGCACCGGCGGCGACGCCAACGCCGCCATCAACCTCCTC
CTCTCCCACCCTACGGACGAGGCCAGCGGTCGTGGCGCCGGCGGCGGCGA
CAGCAGCAGCAGCAACAGCAGCAGCAACACCAGCCGCAGCAGTAGCGGCA
GAATCAGCGGTGACGCCTTGGGGGGGGGGGAACAGAGCGGACCTGGACCG
CTTGGCCGAGGTGGCCGAGGTGTTCCCGGGGGCCGACAAGTCCCTCCTGC
AGGACGTGCTGGCCCGCACCGGCGGCGACGCCAACGCCGCCATCAACCTC
CTCCTCTCCCACCCTACGGACGAGGCCAGCGGTCGTGGCGCCGGCGGCGG
CGACAGCAGCAGCAGCAACAGCAGCAGCAACACCAGCCGCAGCAGTAGCG
GCAGAATCAGCGGTGACGCCTTGGGGGGGGGGGAACAG
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