mRNA_S-ischiensis_contig8.19704.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19704.1
Unique NamemRNA_S-ischiensis_contig8.19704.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3261226..3261746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19704.1prot_S-ischiensis_contig8.19704.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3261366..3261701 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.5354807-UTR-S-ischiensis_contig8:3261225..32613651622817268.5354807-UTR-S-ischiensis_contig8:3261225..3261365Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3261226..3261365 +
1695740982.0976226-UTR-S-ischiensis_contig8:3261225..32613651695740982.0976226-UTR-S-ischiensis_contig8:3261225..3261365Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3261226..3261365 +
1622817268.5564306-UTR-S-ischiensis_contig8:3261701..32617461622817268.5564306-UTR-S-ischiensis_contig8:3261701..3261746Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3261702..3261746 +
1695740982.1249428-UTR-S-ischiensis_contig8:3261701..32617461695740982.1249428-UTR-S-ischiensis_contig8:3261701..3261746Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3261702..3261746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.5461032-CDS-S-ischiensis_contig8:3261365..32617011622817268.5461032-CDS-S-ischiensis_contig8:3261365..3261701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3261366..3261701 +
1695740982.1102417-CDS-S-ischiensis_contig8:3261365..32617011695740982.1102417-CDS-S-ischiensis_contig8:3261365..3261701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3261366..3261701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19704.1

>prot_S-ischiensis_contig8.19704.1 ID=prot_S-ischiensis_contig8.19704.1|Name=mRNA_S-ischiensis_contig8.19704.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
MCTDIAASVVNMVLQLCFGEEGCLACPQTLQERLGSFFFVSEPPGPRRRA
VLPAQPCVPRADVLARTCRAVLRLRPGRWPVVHKLTYTRAQANAYRDLLP
PRSSPHDHRGR*
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mRNA from alignment at S-ischiensis_contig8:3261226..3261746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19704.1 ID=mRNA_S-ischiensis_contig8.19704.1|Name=mRNA_S-ischiensis_contig8.19704.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=521bp|location=Sequence derived from alignment at S-ischiensis_contig8:3261226..3261746+ (Schizocladia ischiensis KU_0333)
CTCTCCTCCGCCCGCTCCGGCTTCATGATGCCCTCACCTCTTCCTGGGGC
ACCACGGGGGTCTGACCTCCACCGCCGCCACCATCGCCCCACCGACCGAC
GGATGGGCCAACCAACCTAACGGGGCGACTGAACCTCCTGATGTGCACAG
ACATCGCCGCCAGCGTAGTCAACATGGTGCTTCAACTTTGTTTTGGGGAG
GAAGGGTGCCTCGCCTGCCCCCAGACCCTCCAGGAAAGGCTCGGTTCGTT
TTTTTTTGTTTCCGAGCCGCCCGGCCCACGCCGCCGGGCCGTTTTGCCTG
CCCAGCCTTGTGTCCCCCGGGCGGACGTCCTGGCCCGCACGTGCCGGGCC
GTGCTCAGGCTCAGACCCGGGCGTTGGCCGGTAGTACACAAGCTTACATA
TACTCGAGCACAAGCGAACGCTTATAGGGATTTATTACCGCCGCGCAGCA
GTCCTCATGATCACCGGGGGCGATAGTCCCTGACCTGGCGGGTGCTTGGG
GGTTGCGTGGGTGGCGCTCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3261226..3261746+

>mRNA_S-ischiensis_contig8.19704.1 ID=mRNA_S-ischiensis_contig8.19704.1|Name=mRNA_S-ischiensis_contig8.19704.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig8:3261226..3261746+ (Schizocladia ischiensis KU_0333)
ATGTGCACAGACATCGCCGCCAGCGTAGTCAACATGGTGCTTCAACTTTG
TTTTGGGGAGGAAGGGTGCCTCGCCTGCCCCCAGACCCTCCAGGAAAGGC
TCGGTTCGTTTTTTTTTGTTTCCGAGCCGCCCGGCCCACGCCGCCGGGCC
GTTTTGCCTGCCCAGCCTTGTGTCCCCCGGGCGGACGTCCTGGCCCGCAC
GTGCCGGGCCGTGCTCAGGCTCAGACCCGGGCGTTGGCCGGTAGTACACA
AGCTTACATATACTCGAGCACAAGCGAACGCTTATAGGGATTTATTACCG
CCGCGCAGCAGTCCTCATGATCACCGGGGGCGATAGATGTGCACAGACAT
CGCCGCCAGCGTAGTCAACATGGTGCTTCAACTTTGTTTTGGGGAGGAAG
GGTGCCTCGCCTGCCCCCAGACCCTCCAGGAAAGGCTCGGTTCGTTTTTT
TTTGTTTCCGAGCCGCCCGGCCCACGCCGCCGGGCCGTTTTGCCTGCCCA
GCCTTGTGTCCCCCGGGCGGACGTCCTGGCCCGCACGTGCCGGGCCGTGC
TCAGGCTCAGACCCGGGCGTTGGCCGGTAGTACACAAGCTTACATATACT
CGAGCACAAGCGAACGCTTATAGGGATTTATTACCGCCGCGCAGCAGTCC
TCATGATCACCGGGGGCGATAG
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