mRNA_S-ischiensis_contig8.19699.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19699.1
Unique NamemRNA_S-ischiensis_contig8.19699.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3242793..3244460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.195433-CDS-S-ischiensis_contig8:3242792..32429341622817263.195433-CDS-S-ischiensis_contig8:3242792..3242934Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3242793..3242934 -
1695740979.023526-CDS-S-ischiensis_contig8:3242792..32429341695740979.023526-CDS-S-ischiensis_contig8:3242792..3242934Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3242793..3242934 -
1622817263.206275-CDS-S-ischiensis_contig8:3244239..32444601622817263.206275-CDS-S-ischiensis_contig8:3244239..3244460Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3244240..3244460 -
1695740979.0348718-CDS-S-ischiensis_contig8:3244239..32444601695740979.0348718-CDS-S-ischiensis_contig8:3244239..3244460Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3244240..3244460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19699.1prot_S-ischiensis_contig8.19699.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3242793..3244460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19699.1

>prot_S-ischiensis_contig8.19699.1 ID=prot_S-ischiensis_contig8.19699.1|Name=mRNA_S-ischiensis_contig8.19699.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp
MSRSPAPAEPAAAAAAGGGAPAPFLSAMSSFSSSVPAGTSPSAAALMRLP
GSVARRLQGWRTLTSEGPAAWVARATAAPMPVRPKDTPPRAAVGSSRSGS
GSGGGWARDDDEEVGDGGGGG
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mRNA from alignment at S-ischiensis_contig8:3242793..3244460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19699.1 ID=mRNA_S-ischiensis_contig8.19699.1|Name=mRNA_S-ischiensis_contig8.19699.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1668bp|location=Sequence derived from alignment at S-ischiensis_contig8:3242793..3244460- (Schizocladia ischiensis KU_0333)
ATGTCGCGGTCGCCGGCGCCCGCGGAGCCTGCGGCGGCGGCGGCCGCCGG
GGGGGGGGCGCCAGCACCTTTTCTATCGGCCATGTCGTCTTTTTCGTCGT
CGGTGCCGGCGGGGACGTCGCCGTCGGCGGCGGCGCTGATGCGGCTGCCC
GGGAGCGTTGCGCGGCGGCTTCAGGGGTGGAGGACGCTGACGTCGGAGGG
GCCGGCGGCGTGGGTGGCGCGGTGAGTGCTTGCTTGGTGTGTGAGCGCCT
ACCAAAAGCGCGGTGCTGCGAGTGGCCGGGGACCTGCTCTCCGCCTCAAA
AGTACAGTACGAGAAGCGCTTTGTTAAGTAATCAAGCCTCGCCCGTGTGT
GCGTGTTTGTACGCGTGTGTGCGTGTGTTTTTTTGGGGGGGAGGGGCGGA
AGTGGGAGGGAGGGAGGGTGGGGGGGCGGGGGCTGCAGGGAGAGAAGCAC
GAGGGGACGCATGAGAGGGTCCTAAACGGCAATTGCAAGTGCTATGAACT
GGTGCCGGTTTTTACCGGTCGGTACCAGTTAGCTGGTTTAAACGGTTCAC
CAACCCGCGGCCACTCGTGTAGCCGGAGCGGGTGAAATTACCGTGATTCG
TTGATTTTGGCAATACTTTAGCCGTTACCGGCAACCGGTTAACACTGATC
GGTCACGCGACCAGCTAACAGTTCAACTGGTAGGCCTTGCCAGTTCACAA
CTCTAGCAATTGCAAGGCCCTGAGGGTTACACCCCACCGCAAAAAGACCA
CAGGGGGGGTCACAGGTCCGGCCGGTCTTGACTACGGGCCGGGCCGGATC
GGGTCGAGCCTCGGACAGCTACCACGGGTCGGGCCAAGGCCGGGCCCAAC
GGGTAAAAACATTCTCGGGCGGGGCAGGCCCGGTCTCTACCCGCAAGAGT
GACATTAAATTAGGAATACAATACAGTAGTACTTCCCTAAATTGGACACG
GAGGGTACGGTGTATAAATTGCTCCGTTCGCCCGATTTGTACTAGCTGAA
CACCGCCCGCTCATTCCATGCACGGTTTGTGAGCCGCATTTCCAATATAC
CGACCCTCGGATCGAGCTGAATATGTGGATTTTTCAATGGCCGGGGTTCC
GGTGCCACTGAACGCCACCCCAGACCATAGTGTCAGGGGGGGCGACCGCC
TCATCGTCCTGTTACTGGATTGCGGTACAGTACTGTGCAATGTACAACGT
TCGAGCGCCTCTGTCAGCTGTGACGGCCGTGCCACGGTGTACTACGTAGC
ACTGTAGGCGTGTTTTTTCAGCGAGGAGTTAGCCTGAGCGTAAGTAACAC
CATCTCCTCTCCTCCGAGTCTGTCAACCCTTTTGCCCCTGGTAAATTGGA
CTTGCATGCTAAAACCCTATGATTATACGGATGCTAGGGGCAAAAGGGTT
AAGGTTCAACTGACTGCAGCAGCCACGAAAACAGCCTGAGTTGCGGCGGC
AAACCGCAAAACTCTAAAGTTTGGGCTGGCCCTGCACCCACCCAATTGTG
CCCACCCACCCACCCCCCCAATGCAGGGCGACAGCTGCACCCATGCCCGT
CCGGCCCAAAGACACGCCCCCGAGGGCCGCCGTGGGATCCAGCCGCTCCG
GCAGTGGCAGCGGGGGCGGGTGGGCCCGCGATGATGACGAAGAAGTCGGA
GACGGCGGTGGAGGAGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3242793..3244460-

>mRNA_S-ischiensis_contig8.19699.1 ID=mRNA_S-ischiensis_contig8.19699.1|Name=mRNA_S-ischiensis_contig8.19699.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig8:3242793..3244460- (Schizocladia ischiensis KU_0333)
ATGTCGCGGTCGCCGGCGCCCGCGGAGCCTGCGGCGGCGGCGGCCGCCGG
GGGGGGGGCGCCAGCACCTTTTCTATCGGCCATGTCGTCTTTTTCGTCGT
CGGTGCCGGCGGGGACGTCGCCGTCGGCGGCGGCGCTGATGCGGCTGCCC
GGGAGCGTTGCGCGGCGGCTTCAGGGGTGGAGGACGCTGACGTCGGAGGG
GCCGGCGGCGTGGGTGGCGCGATGTCGCGGTCGCCGGCGCCCGCGGAGCC
TGCGGCGGCGGCGGCCGCCGGGGGGGGGGCGCCAGCACCTTTTCTATCGG
CCATGTCGTCTTTTTCGTCGTCGGTGCCGGCGGGGACGTCGCCGTCGGCG
GCGGCGCTGATGCGGCTGCCCGGGAGCGTTGCGCGGCGGCTTCAGGGGTG
GAGGACGCTGACGTCGGAGGGGCCGGCGGCGTGGGTGGCGCGGGCGACAG
CTGCACCCATGCCCGTCCGGCCCAAAGACACGCCCCCGAGGGCCGCCGTG
GGATCCAGCCGCTCCGGCAGTGGCAGCGGGGGCGGGTGGGCCCGCGATGA
TGACGAAGAAGTCGGAGACGGCGGTGGAGGAGGAGGCGACAGCTGCACCC
ATGCCCGTCCGGCCCAAAGACACGCCCCCGAGGGCCGCCGTGGGATCCAG
CCGCTCCGGCAGTGGCAGCGGGGGCGGGTGGGCCCGCGATGATGACGAAG
AAGTCGGAGACGGCGGTGGAGGAGGA
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