mRNA_S-ischiensis_contig8.19688.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19688.1
Unique NamemRNA_S-ischiensis_contig8.19688.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3206714..3208060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size474
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19688.1prot_S-ischiensis_contig8.19688.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3206714..3208059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817297.8551953-CDS-S-ischiensis_contig8:3206713..32068751622817297.8551953-CDS-S-ischiensis_contig8:3206713..3206875Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3206714..3206875 +
1695741006.0598462-CDS-S-ischiensis_contig8:3206713..32068751695741006.0598462-CDS-S-ischiensis_contig8:3206713..3206875Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3206714..3206875 +
1622817297.8662658-CDS-S-ischiensis_contig8:3207511..32077011622817297.8662658-CDS-S-ischiensis_contig8:3207511..3207701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3207512..3207701 +
1695741006.069911-CDS-S-ischiensis_contig8:3207511..32077011695741006.069911-CDS-S-ischiensis_contig8:3207511..3207701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3207512..3207701 +
1622817297.878368-CDS-S-ischiensis_contig8:3207940..32080591622817297.878368-CDS-S-ischiensis_contig8:3207940..3208059Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3207941..3208059 +
1695741006.0797362-CDS-S-ischiensis_contig8:3207940..32080591695741006.0797362-CDS-S-ischiensis_contig8:3207940..3208059Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3207941..3208059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19688.1

>prot_S-ischiensis_contig8.19688.1 ID=prot_S-ischiensis_contig8.19688.1|Name=mRNA_S-ischiensis_contig8.19688.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
GGGKGAWAWQVEFCPLAVAAVMALAGELDASSTSANGALEGRRGGQQLPA
LAALADLGKPAASLFAAAAAKVMHTHADPLPFAGLCLDILGGRARARSRG
VVAGASGHGAAAEHACRGLEAYVLRATWACLRQEDAISAAPGRSARGGGR
EAEQEEE
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mRNA from alignment at S-ischiensis_contig8:3206714..3208060+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19688.1 ID=mRNA_S-ischiensis_contig8.19688.1|Name=mRNA_S-ischiensis_contig8.19688.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1347bp|location=Sequence derived from alignment at S-ischiensis_contig8:3206714..3208060+ (Schizocladia ischiensis KU_0333)
GGCGGCGGCAAGGGGGCCTGGGCATGGCAGGTGGAGTTCTGCCCCCTGGC
CGTAGCGGCTGTGATGGCCCTGGCTGGTGAGCTGGATGCCTCCTCCACGT
CCGCGAACGGGGCGCTCGAGGGTCGCCGGGGGGGGCAGCAGCTGCCGGCA
CTCGCGGCGTTGGTGAGTGGGCTGCGGCAGCCTGCCGTTGTTGGTGGATT
GCCGTATCTACTGGCCAATGCTGTCCGCTCGCTCCGATCCCCATGAACCG
ACGGGCGATGCCGTCGGCCGGTTACCGTATGTGCGGCAGCTCCGATTTAA
ATCGTAGGGCATGCAGCGCCTGCAATCGATGTTTTTGCGTGTCTGCCTCC
TCGCCGTCAAGCCGTCGGCTCTCGCCTCCAGGTGGGGGGGGGCCCCAGCG
TTGACGGCGGATGTTCCGTAGGCCGTCATGCTTCTTCCTGATATACCTTT
CCAAGAAAGGCAGTTGGCCCTTGCTGATCCCCCCGCTCCTCTTCCCGCTC
CTGTCATCCTCCTCCCTCCCTTGCCCCCCGCCGCCTCCTCCTCCTCCTCT
TCTTCCTGCTCTTCCTACCCCTCCCCTCCCCCCTGCCCCTCCTCCCTCTT
CTTCCCCCCCTTTCCTGCCCTCCCCCTCCCCCTCCCCCCTCTCCCTCTCC
TCTACCCCCCCGCCCTCCTCTGGCTCCCCCTTGCCCCCTGCGTGCCCCTC
ACCCCCCCCCCCCCCCCCTCCATCTTCCCCATCCCCCGGGGGGGACCGCC
GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCCCGCCTGCAGGC
CGACCTGGGGAAGCCGGCGGCAAGTCTGTTCGCGGCAGCGGCCGCGAAGG
TCATGCACACCCATGCAGACCCTTTGCCCTTCGCGGGCCTGTGCCTGGAC
ATCCTTGGAGGGAGGGCGCGTGCCAGGAGTCGAGGGGTTGTTGCTGGTGC
TTCAGGGCATGGGGCCGCGGCCGAGCACGCCTGCAGAGGTGATGATCTTT
TCTCATTTTTGTTTCCCGCTGTAGTCCCCCGACCAACGGACGGACGGGCG
GGCGGACGGGCGGGCGGACGGGCAGGCGGACGGGCCCCACCCACCCCCGT
TTTGTGCTACTGTAATCGTGTTTTTGCCTTCTACCCTCAACCGTTTTGCT
TGTTACCCTCTTTACCCGAAACCTTTCTGCTTGTTGTACCCTTGGACCCG
CGGTGGCGGCGGCGGCGGCGGCGGCAGGGCTGGAGGCCTACGTTCTACGG
GCCACGTGGGCGTGCCTGCGCCAGGAAGATGCGATCAGCGCCGCCCCTGG
GCGATCTGCCCGGGGTGGCGGGAGGGAGGCGGAGCAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3206714..3208060+

>mRNA_S-ischiensis_contig8.19688.1 ID=mRNA_S-ischiensis_contig8.19688.1|Name=mRNA_S-ischiensis_contig8.19688.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig8:3206714..3208060+ (Schizocladia ischiensis KU_0333)
GGCGGCGGCAAGGGGGCCTGGGCATGGCAGGTGGAGTTCTGCCCCCTGGC
CGTAGCGGCTGTGATGGCCCTGGCTGGTGAGCTGGATGCCTCCTCCACGT
CCGCGAACGGGGCGCTCGAGGGTCGCCGGGGGGGGCAGCAGCTGCCGGCA
CTCGCGGCGTTGGGCGGCGGCAAGGGGGCCTGGGCATGGCAGGTGGAGTT
CTGCCCCCTGGCCGTAGCGGCTGTGATGGCCCTGGCTGGTGAGCTGGATG
CCTCCTCCACGTCCGCGAACGGGGCGCTCGAGGGTCGCCGGGGGGGGCAG
CAGCTGCCGGCACTCGCGGCGTTGGCCGACCTGGGGAAGCCGGCGGCAAG
TCTGTTCGCGGCAGCGGCCGCGAAGGTCATGCACACCCATGCAGACCCTT
TGCCCTTCGCGGGCCTGTGCCTGGACATCCTTGGAGGGAGGGCGCGTGCC
AGGAGTCGAGGGGTTGTTGCTGGTGCTTCAGGGCATGGGGCCGCGGCCGA
GCACGCCTGCAGAGGCCGACCTGGGGAAGCCGGCGGCAAGTCTGTTCGCG
GCAGCGGCCGCGAAGGTCATGCACACCCATGCAGACCCTTTGCCCTTCGC
GGGCCTGTGCCTGGACATCCTTGGAGGGAGGGCGCGTGCCAGGAGTCGAG
GGGTTGTTGCTGGTGCTTCAGGGCATGGGGCCGCGGCCGAGCACGCCTGC
AGAGGGCTGGAGGCCTACGTTCTACGGGCCACGTGGGCGTGCCTGCGCCA
GGAAGATGCGATCAGCGCCGCCCCTGGGCGATCTGCCCGGGGTGGCGGGA
GGGAGGCGGAGCAGGAGGAGGAGGGCTGGAGGCCTACGTTCTACGGGCCA
CGTGGGCGTGCCTGCGCCAGGAAGATGCGATCAGCGCCGCCCCTGGGCGA
TCTGCCCGGGGTGGCGGGAGGGAGGCGGAGCAGGAGGAGGAG
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