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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 574 |
| Cds size | 552 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817297.394302-UTR-S-ischiensis_contig8:3161978..3162000 | 1622817297.394302-UTR-S-ischiensis_contig8:3161978..3162000 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3161979..3162000 + |
| 1695741005.7479281-UTR-S-ischiensis_contig8:3161978..3162000 | 1695741005.7479281-UTR-S-ischiensis_contig8:3161978..3162000 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3161979..3162000 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817297.408681-CDS-S-ischiensis_contig8:3162000..3162269 | 1622817297.408681-CDS-S-ischiensis_contig8:3162000..3162269 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3162001..3162269 + |
| 1695741005.7589724-CDS-S-ischiensis_contig8:3162000..3162269 | 1695741005.7589724-CDS-S-ischiensis_contig8:3162000..3162269 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3162001..3162269 + |
| 1622817297.4196265-CDS-S-ischiensis_contig8:3163634..3163764 | 1622817297.4196265-CDS-S-ischiensis_contig8:3163634..3163764 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3163635..3163764 + |
| 1695741005.7691278-CDS-S-ischiensis_contig8:3163634..3163764 | 1695741005.7691278-CDS-S-ischiensis_contig8:3163634..3163764 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3163635..3163764 + |
| 1622817297.4308448-CDS-S-ischiensis_contig8:3164791..3164944 | 1622817297.4308448-CDS-S-ischiensis_contig8:3164791..3164944 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3164792..3164944 + |
| 1695741005.7792423-CDS-S-ischiensis_contig8:3164791..3164944 | 1695741005.7792423-CDS-S-ischiensis_contig8:3164791..3164944 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3164792..3164944 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19677.1 >prot_S-ischiensis_contig8.19677.1 ID=prot_S-ischiensis_contig8.19677.1|Name=mRNA_S-ischiensis_contig8.19677.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp
MLCPQGAGVSPPPSPPPPQAMPLPPAQPTGLPPPPPQTWPTKESSGGSGH
HGRGGSHSAGVGGGWGGGWCAPSQLEKALPGVERVLERDRRALEGIFMHY
ALDQRQQSRPPAGTCRGANTRVLPLIRLYTLCKDFSLVPGLASRDDAFTV
YARLAYPDERGITLESVISREAAGAAEKEGLGLG back to topmRNA from alignment at S-ischiensis_contig8:3161979..3164944+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19677.1 ID=mRNA_S-ischiensis_contig8.19677.1|Name=mRNA_S-ischiensis_contig8.19677.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2966bp|location=Sequence derived from alignment at S-ischiensis_contig8:3161979..3164944+ (Schizocladia ischiensis KU_0333)
TGCCCTGGCAAAGCTGGCGAAGATGCTGTGCCCGCAAGGGGCAGGGGTGT
CCCCCCCCCCATCTCCTCCACCCCCCCAAGCAATGCCATTGCCACCGGCT
CAGCCCACAGGGCTGCCACCTCCACCACCCCAGACCTGGCCAACAAAGGA
GTCGAGTGGTGGCAGTGGCCACCACGGCAGGGGTGGCAGCCACAGTGCCG
GAGTTGGAGGCGGTTGGGGGGGCGGCTGGTGTGCACCTTCACAACTGGAG
AAGGCTCTGCCTGGGGTGGAGAGGGTACTGGAAAGGGACAGGTACGGTTC
TCGAAGCTGTGCCCTCACTCAGGGCTCATAACCTGTTGAAGTATGTTTAC
CTTGTCTCATGGCAATGCTATGGACCTTGTTGGATTTGTGCCGTTAGAGA
GGGCAGTGAGGCCTGGGGGCCTGTGCTGACTGTGGCAGAAATACCTCAGT
TGCAATGAGGAGTGCTACAAGGGGCTGTATGGAGTCTTGTATAGGGGACA
AGAGGCCATGTGTGTCATTTCAAACATCATGGATACAGATATTCTGACAC
TCACATGGCCATTCGCTGAGCCACTCTCCACGTCGGTGTGAAGAGTTACA
GTTGCAGGGTTCAGGGTGGGTACCATGCCGAGTTGTCGGATACAGTATTG
GCAGTGCTACGGTGTTCCGAAGTTCACTGGCAAAGTATGAGCCTGTCAGG
TTATGAGCCCTGGTTCATGCAATGGGGAAAGATTGTGAGCCCACACCGTG
ACGGCTGGCACCCAGATCCGTGAATTGTCGGATACAGTATTGGCAGTGCT
ACTGTGTTCCGAAGTTCACTGGGAAAGTATGAGCCTGTCAGGTTCTGAGC
CCTGGTTCTGGCAATGGGAAAAGTATGAGCCTGTCAGGTTGTGAGCCCTG
GTTCAGTATGAGCCTGTCAGGTTATGAGCCCTGGTTCATGCAGTGGGAAA
AGACTGTGAGCCCACGTCATAACAGCTGGCACCCAGATCCGTTTGTGTGA
CCAGCTTTTGGCCTGCGGTTGTGACATTGCCTAGACCTTGGTCGAGCCGT
AACGTCCAAGGCTCCCTTTTCTCTGGAGGCTTGATGTCTAACTGGATCTT
TTCAAGCCTGCAGGCATCTTGCGTTTCATGGCCACCATTGCCCACGATTA
GAAGCAGTGGGGGATTCCACAAATGTGCCCGGTGAAACGCTATTGTCCCC
GAAGTGACCGAACTGCGAAAGGTCCGAGAAAGGTGCATACAATACTCTTG
CATACTTTGTCATATGCCTCCACCGCTCCCTTTGCAGGCATGCATCTTAA
CGGGAGCCCTCTGACTCTCTGCGGTGCACCGCTGGTGTAGGCCAATGCCC
CGATCATTCCTTGCCACACACGCCATTTTGGCTCGGGTGTGAATGTCCAC
ATCTCGCAAACTACAATTGTCGATTGAAAGGGAGGGCATGGGCACACTGG
CAAATATTCACGTAATGGCCTCGAGAAAGCATCTATCCAATGATCCCGTA
CATGCCAGGGTTGGCACTTAACCCCTAAGTGGTGCCCTTTCAGGCCCCTA
ATTAGGGGCAATGAGGGGTAATTAGACGTAAAATGAAGGCTACTTAGGCC
CTATTTTAATCTGTAAGTGCCAACCCTGGTACATGCGGTCCCTGCCATCC
AAGCAGGCGGGCACTGGAGGGGATATTCATGCACTACGCCCTGGACCAGC
GACAACAATCCAGACCACCTGCGGGCACGTGCAGGGGTGCAAACACACGG
GTTTTGCCACTCATCCGCCTTTACACCCTGTGCAAGGTGAGCTGGGCTAT
CTACGTGAAACCTCACAGCTACCTGTAACAGAAAGTAGCAGCTGCTGCAG
CCCTTTGATCTCACTGGAAGTGCTTGCAACCTTCAGGGTTGGGGATAGCT
ACAGTATGTTGGGGATAGCTACAGTATGTGTTTTGTAACTATGTATGATT
CCTCGTGCTCCTCCTCCTCCCCCTGCTCTCCATACTCATCCTTCCTGGTG
AGCTAAGGAAGGGCCACTGTTGAGGGCTTCAGTGACGTGGCCCACACCTC
ACCCTGTGTTCCTGTTAATCCTGCACTAATGTCCACCAAAAAGGACCCAC
TGGCTAGTGTTGTTCCTCCCTTGCAGTTCTTCGCAGTAGCTGGTCGACGC
CATGGCGAATCGGTAAAATTTCCCAGCTTCGCACAGCCCCAGCACGGGCG
CAGCGGTACACCGACGCCGAAACATTTGCAAGGCTTCAAAAACATTGCGG
CACCACTGCACAGGAAACGTGTGTGTTGTACCACCGAACAGTGCCCGTGT
GCTGGCACGCAGCACGGCCCACCTGTCTCCTATAGTTTGCAGCAGCGACA
AACCTGTGCTGCACTCACAACTGGGGTGGATACCACCTCAGCAAACGGGA
GCCTGCCTAATCGAAACAACAGCGTACTGCATCCCTCCAGGGAGGGCTTA
GTCGAAACAACAGTGCATGATTTTTGTGCCCTGCGGGTGAAAAGAAGGGC
TTCTGGTGAGGTCCCCACCTTAGGTTGTTGGGACGGGGCCCGGAACTCAC
ATTCATCAAATTAATTTTAAAAACAGTGTACCTCCATCCCTCCAGGGAGG
GCTTCCTGCATGGCCCCCGGGGGCACCCCAGCCACAAATCAAGCCCGCAC
ATTGCCACGCTACTGTAGAGTACTCCGAAGTAGAGTACGATGTTGTAGCC
AGCGGGCTGATTGAAATGGACGCGACGACCGTGCGCAGCACACGTGCATG
CACACACACACACACACACACACACACACTCACTCACACACACACACACA
CCGCACTTTGCAGGACTTCTCCCTGGTCCCCGGGCTGGCCTCCCGCGACG
ACGCCTTCACGGTGTACGCTCGCCTGGCCTACCCGGATGAACGTGGCATC
ACCCTGGAAAGTGTCATATCCAGGGAGGCGGCGGGGGCGGCCGAGAAGGA
GGGGCTCGGGCTGGGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:3161979..3164944+ >mRNA_S-ischiensis_contig8.19677.1 ID=mRNA_S-ischiensis_contig8.19677.1|Name=mRNA_S-ischiensis_contig8.19677.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig8:3161979..3164944+ (Schizocladia ischiensis KU_0333)
ATGCTGTGCCCGCAAGGGGCAGGGGTGTCCCCCCCCCCATCTCCTCCACC
CCCCCAAGCAATGCCATTGCCACCGGCTCAGCCCACAGGGCTGCCACCTC
CACCACCCCAGACCTGGCCAACAAAGGAGTCGAGTGGTGGCAGTGGCCAC
CACGGCAGGGGTGGCAGCCACAGTGCCGGAGTTGGAGGCGGTTGGGGGGG
CGGCTGGTGTGCACCTTCACAACTGGAGAAGGCTCTGCCTGGGGTGGAGA
GGGTACTGGAAAGGGACAGATGCTGTGCCCGCAAGGGGCAGGGGTGTCCC
CCCCCCCATCTCCTCCACCCCCCCAAGCAATGCCATTGCCACCGGCTCAG
CCCACAGGGCTGCCACCTCCACCACCCCAGACCTGGCCAACAAAGGAGTC
GAGTGGTGGCAGTGGCCACCACGGCAGGGGTGGCAGCCACAGTGCCGGAG
TTGGAGGCGGTTGGGGGGGCGGCTGGTGTGCACCTTCACAACTGGAGAAG
GCTCTGCCTGGGGTGGAGAGGGTACTGGAAAGGGACAGGCGGGCACTGGA
GGGGATATTCATGCACTACGCCCTGGACCAGCGACAACAATCCAGACCAC
CTGCGGGCACGTGCAGGGGTGCAAACACACGGGTTTTGCCACTCATCCGC
CTTTACACCCTGTGCAAGGCGGGCACTGGAGGGGATATTCATGCACTACG
CCCTGGACCAGCGACAACAATCCAGACCACCTGCGGGCACGTGCAGGGGT
GCAAACACACGGGTTTTGCCACTCATCCGCCTTTACACCCTGTGCAAGGA
CTTCTCCCTGGTCCCCGGGCTGGCCTCCCGCGACGACGCCTTCACGGTGT
ACGCTCGCCTGGCCTACCCGGATGAACGTGGCATCACCCTGGAAAGTGTC
ATATCCAGGGAGGCGGCGGGGGCGGCCGAGAAGGAGGGGCTCGGGCTGGG
GGACTTCTCCCTGGTCCCCGGGCTGGCCTCCCGCGACGACGCCTTCACGG
TGTACGCTCGCCTGGCCTACCCGGATGAACGTGGCATCACCCTGGAAAGT
GTCATATCCAGGGAGGCGGCGGGGGCGGCCGAGAAGGAGGGGCTCGGGCT
GGGG back to top
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