mRNA_S-ischiensis_contig8.19674.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19674.1
Unique NamemRNA_S-ischiensis_contig8.19674.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3152204..3154119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size222
Cds size222
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19674.1prot_S-ischiensis_contig8.19674.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3152204..3154119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.72111-CDS-S-ischiensis_contig8:3152203..31522281622817262.72111-CDS-S-ischiensis_contig8:3152203..3152228Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3152204..3152228 +
1695740978.6538315-CDS-S-ischiensis_contig8:3152203..31522281695740978.6538315-CDS-S-ischiensis_contig8:3152203..3152228Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3152204..3152228 +
1622817262.7354689-CDS-S-ischiensis_contig8:3152777..31528941622817262.7354689-CDS-S-ischiensis_contig8:3152777..3152894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3152778..3152894 +
1695740978.6653543-CDS-S-ischiensis_contig8:3152777..31528941695740978.6653543-CDS-S-ischiensis_contig8:3152777..3152894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3152778..3152894 +
1622817262.7485123-CDS-S-ischiensis_contig8:3154039..31541191622817262.7485123-CDS-S-ischiensis_contig8:3154039..3154119Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3154040..3154119 +
1695740978.6772726-CDS-S-ischiensis_contig8:3154039..31541191695740978.6772726-CDS-S-ischiensis_contig8:3154039..3154119Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3154040..3154119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19674.1

>prot_S-ischiensis_contig8.19674.1 ID=prot_S-ischiensis_contig8.19674.1|Name=mRNA_S-ischiensis_contig8.19674.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
SRAHEGGSGPAAIGGGPAGAPPGGICSGRRPGGRGRRAGGRDLRRREGSP
CRPAKADCPAGTFHRIRAHIKDSG
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mRNA from alignment at S-ischiensis_contig8:3152204..3154119+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19674.1 ID=mRNA_S-ischiensis_contig8.19674.1|Name=mRNA_S-ischiensis_contig8.19674.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1916bp|location=Sequence derived from alignment at S-ischiensis_contig8:3152204..3154119+ (Schizocladia ischiensis KU_0333)
AGCCGTGCCCACGAGGGAGGCTCAGGTACGAGAAACAGTGTATATGTACT
CACATATATATACTGCGTAGTGTGTGCTCACATAGTGCTTGCCGTAGTCC
CGAGACCATTGACCATGCTCCTCGGTCGAGACGGAGCAGACACAGTGCGG
CAGTGCAAACCTTGTGCAAAGCATGGTCCTCTGGTACTGTAGTGAACTCA
ACGACGCGTCGCTGTTGGGGCGCTGTTTTGTTTTCGCCCCCTTCCTATCC
AGGGGAGGTTCGCTGCAGCCAGGCGCCAATGAATTCGACCGCCGACCGCG
TCTAAACCAGGCGTCAAGTCCAGGACCCATACTGTACATTTTCAGCCAGT
AGAACCGCACAAGCCCAAACACACCGACCTAGGTATGCAATTCGGCAAAC
CCGGCCCAACCATGCCCACCAATGATTTCGAACGCCTACTTGTACAGTCG
TCTCAACCAGGCGTACCTTCCAGGGAAGAAGGAAAAAAAAGAAAAAAAAT
CTGCCAAGCGGCTCAATCCCCCCCGCTCCCCCGTCCCGGCGGTGCTGTCC
TCTGTACTCGTATATGCTTTTCAGGACCTGCTGCAATTGGTGGAGGCCCA
GCAGGGGCGCCTCCAGGAGGCATTTGCAGTGGACGGCGTCCGGGGGGGAG
AGGACGGCGAGCAGGCGGAAGAGATCTCCGTCGCCGTGAGGGTGCGTGCG
TGCACGTGTGTGTGTTTGTGTGTGTGTGCGCGCGCGCGCGTGTGTGTTTG
TATGTGTGTACAGCAGGTGCAGTACGTACGGGCGGGTGCGGTGTGCTTGT
GTGCATGTGTGTGTGTATGTGTGTGGTGTGTGTGTGTGTGCGTGTGCGTG
TGTGCATGCGCGCGCGTGTTTTTACGTGTGCAGCTGCAGTTAAGTGCGGG
CGGGTGTGGTGTGCTTGTGTGCACGTATGTGTGTGTGTGTGTTTTTGTCC
AAGCGTTTGCGAGTGTGTGCCTGCTGCGCAGCACACGTGTGCATGGGCGG
GTGGGAGGGCCTGCACGGCGTTTTTTTGCTTGCTTCACACTCGCCGGTGG
TTTTTTCCGCCCCATTTGTCACCTCCCGGAACCCCTCTCCCAGTCGGTCT
TGTTCTGCATATGGTTGCATGACACTTCTATCGTACTTCGAAGTACTTCC
ATACTTGCAAATGTATGAGCACTGTCTTGGACATTCTTCATGGTGCACGA
GTGGCCGTACCATTCATTGGGGTTTTGAACTGGCAAGGCCCACGATTTCA
ACTGGAAACCAGCTACTGTAAGTCCCTGTTGTTGACTGATTCACCAACTG
CATAGTTTGCGCGATGCCGGGCATTTATTTTTGCAGGAGAAAGTCGGCAA
TAAGGGCCATCGCGTCCGTGCTTCGGCGCTACCCGATACGGCAAATTGAA
CGAAATTTTCACAGCGGGCAGAAACGAAAAATGGTATAGCCTGTGGTCGG
CTACCCGGTTGAACCGTTTGACTGAAACAACCGATAACACAGGCATGACT
GAAACAACCGATAACACAGGCACTACTGTACTATCATTCCTACTTCGAAC
TTACTACAGCGCTCTTCCAGCTACAAACACAAGGCCACCTGCACTCACAC
GGCGGCCCGCAAGAACCCAGCACCTCACCTCTCCTCACCCACATGCCCAC
TACTCCTGCGCTTCGTCCTCGTGCCCCTCCACCTTTTCCACCGCCACAGC
CCTCCCCCTGCGTCTGGCCTCCTCTCCTCTGCCTTCCCCTCCTCCTCCTT
CTCCTCCTCCTCCTCCTCTTCTCGCCGGTGTTCCTCACGCCTGCCCCCTC
TTCCCCTTCCCCTTGCCCTTGGCCCCACCCGAACAGGAAGCCCGTGCAGG
CCTGCAAAGGCTGATTGCCCAGCTGGGACGTTCCACAGGATCAGAGCCCA
CATCAAAGATAGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3152204..3154119+

>mRNA_S-ischiensis_contig8.19674.1 ID=mRNA_S-ischiensis_contig8.19674.1|Name=mRNA_S-ischiensis_contig8.19674.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig8:3152204..3154119+ (Schizocladia ischiensis KU_0333)
AGCCGTGCCCACGAGGGAGGCTCAGAGCCGTGCCCACGAGGGAGGCTCAG
GACCTGCTGCAATTGGTGGAGGCCCAGCAGGGGCGCCTCCAGGAGGCATT
TGCAGTGGACGGCGTCCGGGGGGGAGAGGACGGCGAGCAGGCGGAAGAGA
TCTCCGTCGCCGTGAGGGACCTGCTGCAATTGGTGGAGGCCCAGCAGGGG
CGCCTCCAGGAGGCATTTGCAGTGGACGGCGTCCGGGGGGGAGAGGACGG
CGAGCAGGCGGAAGAGATCTCCGTCGCCGTGAGGGAAGCCCGTGCAGGCC
TGCAAAGGCTGATTGCCCAGCTGGGACGTTCCACAGGATCAGAGCCCACA
TCAAAGATAGTGGCGAAGCCCGTGCAGGCCTGCAAAGGCTGATTGCCCAG
CTGGGACGTTCCACAGGATCAGAGCCCACATCAAAGATAGTGGC
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