mRNA_S-ischiensis_contig8.19671.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19671.1
Unique NamemRNA_S-ischiensis_contig8.19671.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3146217..3147464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19671.1prot_S-ischiensis_contig8.19671.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3146217..3147464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.6621633-CDS-S-ischiensis_contig8:3146216..31463181622817262.6621633-CDS-S-ischiensis_contig8:3146216..3146318Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3146217..3146318 +
1695740978.6113234-CDS-S-ischiensis_contig8:3146216..31463181695740978.6113234-CDS-S-ischiensis_contig8:3146216..3146318Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3146217..3146318 +
1622817262.673013-CDS-S-ischiensis_contig8:3146700..31467491622817262.673013-CDS-S-ischiensis_contig8:3146700..3146749Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3146701..3146749 +
1695740978.6232626-CDS-S-ischiensis_contig8:3146700..31467491695740978.6232626-CDS-S-ischiensis_contig8:3146700..3146749Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3146701..3146749 +
1622817262.683777-CDS-S-ischiensis_contig8:3147315..31474641622817262.683777-CDS-S-ischiensis_contig8:3147315..3147464Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3147316..3147464 +
1695740978.6412613-CDS-S-ischiensis_contig8:3147315..31474641695740978.6412613-CDS-S-ischiensis_contig8:3147315..3147464Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3147316..3147464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19671.1

>prot_S-ischiensis_contig8.19671.1 ID=prot_S-ischiensis_contig8.19671.1|Name=mRNA_S-ischiensis_contig8.19671.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
SHSPSGNPGHPMAKNGSLAWEPDLTRDLMSRLQEGAEVSRAFLEAHSRTP
ADAMWAATGALRVLAEALPEAADASAAAALRLLSLLVVDNGAHGWVDVA*
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mRNA from alignment at S-ischiensis_contig8:3146217..3147464+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19671.1 ID=mRNA_S-ischiensis_contig8.19671.1|Name=mRNA_S-ischiensis_contig8.19671.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1248bp|location=Sequence derived from alignment at S-ischiensis_contig8:3146217..3147464+ (Schizocladia ischiensis KU_0333)
AGCCACTCTCCTTCGGGCAACCCTGGACACCCAATGGCGAAGAACGGCTC
GCTCGCTTGGGAACCAGACCTGACGAGGGACCTGATGTCGCGTTTGCAAG
AGGTGAATGGCGTCTCTTGTGGGTCATAGCCCCCCGACAGTCCGTCCGCC
TTGCACCCACATGGCGGCTGAGAACGTGCCTTGGGACGCTACTCACGAAG
CAATCGGACACACCAAGGCCGGCCCAGCAGGCCGCAGACGCTTCCAGTAC
ACCTTCCTTCAAGCGACGAACCTCAAGTGCAATCGAAAACCTGTGTATGC
CGCTGTCGCCGGGCTCGGACTGCTCAGACTGGGCCCTGCATCGCCAGGGG
CTCCCACACCACCCTATGAACCGATACTGCAGATTTACCCACGTGACAGT
GACCTGCCCCTCACTGCCAGCTTTCGGCCAGTGTTTTTACACCCACGCGT
CTGCACCTTGCCCTCCGCTCGCCGTGCATGTCAGGGGGCAGAGGTTTCGC
GAGCCTTCCTGGAGGCTCATTCTCGGACTCCAGGTAAGAGGGGCCCCAAC
ACCTCTGCAGGAGCGGGCCCAGGGGTCCCCCGACCCCCTCAGCGAAACAG
ATGAGGTTTGCCTGAACCGGCCTGGAGATGCCAGCAAGGGCCGGTTGGTA
GGACGTGGCGTGACATGATGATGTCAACCTACTGTACAGCTATTCGGTGG
TAGCCTCACGTCACACAAGGCAGAAATCCGTGCGTGTCACCCCGTTTCGG
CTGGAAGAGACAGAGAGGCCCTGAAAACCAGCGGCACCGGCCTAGAGGTC
TGGAATTGGTACGAGTACAGCCTGTCTAGAAAATGTCACTTCGCCGCTTC
CGCGCTTCCCCCTGCCTCCCCCTATCCGCCCCGCCGTGTGCCCAGCACAC
CTTCTAAACCTGTCTCCTTCCCACTGGCCCCAGGCATGCCGTGCTCCCGT
TCTCTCCCTGATGTCTCTGCCTGCGTGCCTGCCTGCCTGCCTGCCTGTCT
GTGTGTCTGTCTGTGTGTCTGCCTGTCTGCCTGTCCATCTGTCTGTCTGT
TCCTCTCTCCCTTTCCCGACTCCGGTCCGGCACTGCCTCGCCCTCTCAGC
GGACGCTATGTGGGCCGCAACGGGGGCTCTGCGAGTGTTGGCGGAGGCGT
TGCCCGAGGCAGCGGACGCCTCCGCGGCCGCGGCCCTGCGCCTCCTGTCC
CTCCTGGTGGTGGACAATGGGGCCCACGGGTGGGTTGATGTGGCGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3146217..3147464+

>mRNA_S-ischiensis_contig8.19671.1 ID=mRNA_S-ischiensis_contig8.19671.1|Name=mRNA_S-ischiensis_contig8.19671.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig8:3146217..3147464+ (Schizocladia ischiensis KU_0333)
AGCCACTCTCCTTCGGGCAACCCTGGACACCCAATGGCGAAGAACGGCTC
GCTCGCTTGGGAACCAGACCTGACGAGGGACCTGATGTCGCGTTTGCAAG
AGAGCCACTCTCCTTCGGGCAACCCTGGACACCCAATGGCGAAGAACGGC
TCGCTCGCTTGGGAACCAGACCTGACGAGGGACCTGATGTCGCGTTTGCA
AGAGGGGGCAGAGGTTTCGCGAGCCTTCCTGGAGGCTCATTCTCGGACTC
CAGGGGGCAGAGGTTTCGCGAGCCTTCCTGGAGGCTCATTCTCGGACTCC
AGCGGACGCTATGTGGGCCGCAACGGGGGCTCTGCGAGTGTTGGCGGAGG
CGTTGCCCGAGGCAGCGGACGCCTCCGCGGCCGCGGCCCTGCGCCTCCTG
TCCCTCCTGGTGGTGGACAATGGGGCCCACGGGTGGGTTGATGTGGCGTG
ACGGACGCTATGTGGGCCGCAACGGGGGCTCTGCGAGTGTTGGCGGAGGC
GTTGCCCGAGGCAGCGGACGCCTCCGCGGCCGCGGCCCTGCGCCTCCTGT
CCCTCCTGGTGGTGGACAATGGGGCCCACGGGTGGGTTGATGTGGCGTGA
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