mRNA_S-ischiensis_contig8.19664.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19664.1
Unique NamemRNA_S-ischiensis_contig8.19664.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2975339..2975944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19664.1prot_S-ischiensis_contig8.19664.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2975545..2975850 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.2130578-UTR-S-ischiensis_contig8:2975338..29755441622817268.2130578-UTR-S-ischiensis_contig8:2975338..2975544Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2975339..2975544 +
1695740981.9134192-UTR-S-ischiensis_contig8:2975338..29755441695740981.9134192-UTR-S-ischiensis_contig8:2975338..2975544Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2975339..2975544 +
1622817268.2382703-UTR-S-ischiensis_contig8:2975850..29759441622817268.2382703-UTR-S-ischiensis_contig8:2975850..2975944Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2975851..2975944 +
1695740981.9408612-UTR-S-ischiensis_contig8:2975850..29759441695740981.9408612-UTR-S-ischiensis_contig8:2975850..2975944Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2975851..2975944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.2258654-CDS-S-ischiensis_contig8:2975544..29758501622817268.2258654-CDS-S-ischiensis_contig8:2975544..2975850Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2975545..2975850 +
1695740981.9277384-CDS-S-ischiensis_contig8:2975544..29758501695740981.9277384-CDS-S-ischiensis_contig8:2975544..2975850Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2975545..2975850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19664.1

>prot_S-ischiensis_contig8.19664.1 ID=prot_S-ischiensis_contig8.19664.1|Name=mRNA_S-ischiensis_contig8.19664.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
MVSFDVSMWVEYLLCIAVSGGSPPLGGGTPGASEHTGSDCKAWVCLHTMV
VHGRHGLYHGCSTALQQPHCTCARVEDLITCDWSSSTSSVLYFARLNTAA
R*
back to top

mRNA from alignment at S-ischiensis_contig8:2975339..2975944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19664.1 ID=mRNA_S-ischiensis_contig8.19664.1|Name=mRNA_S-ischiensis_contig8.19664.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig8:2975339..2975944+ (Schizocladia ischiensis KU_0333)
CCGGAAGCCCGTCTTCCTGCTTTACAGTGTGGCGGTGGCACTGCGGGCCG
GTACGAAAGGTCGATGTTTTGGCCAAGCGCTGGCATACACAAACAATTGC
ATAGTGCGGTGGAAGTACAGCTGTAAGTAGAGTTTCCAGGCTGAAGTTTG
TGCCGTGCGCAGCGCTGCAGAGGTGGCAGCTGTTTGTGCACACACGGGCT
GGTGAAATGGTGTCCTTCGATGTGAGTATGTGGGTAGAGTATCTGTTGTG
TATTGCCGTGAGTGGCGGTTCCCCCCCCCTGGGGGGGGGCACGCCAGGGG
CCTCGGAACACACTGGCAGCGACTGCAAGGCTTGGGTTTGCTTGCACACC
ATGGTTGTCCACGGGAGGCACGGCCTCTACCACGGCTGCAGTACTGCACT
GCAGCAACCGCACTGTACTTGTGCACGTGTAGAGGACCTAATTACTTGCG
ACTGGAGCAGTAGTACAAGTTCTGTACTCTACTTTGCCCGTCTAAATACT
GCAGCTAGGTAGCAGCGAAACTCTGTGTTTGCACGTATGCACTAAAATTG
CTGATCTGACGACGCCCGGTAGGCCGATCGTGAGGCTCAACTAACAAAGA
TTCGTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:2975339..2975944+

>mRNA_S-ischiensis_contig8.19664.1 ID=mRNA_S-ischiensis_contig8.19664.1|Name=mRNA_S-ischiensis_contig8.19664.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig8:2975339..2975944+ (Schizocladia ischiensis KU_0333)
ATGGTGTCCTTCGATGTGAGTATGTGGGTAGAGTATCTGTTGTGTATTGC
CGTGAGTGGCGGTTCCCCCCCCCTGGGGGGGGGCACGCCAGGGGCCTCGG
AACACACTGGCAGCGACTGCAAGGCTTGGGTTTGCTTGCACACCATGGTT
GTCCACGGGAGGCACGGCCTCTACCACGGCTGCAGTACTGCACTGCAGCA
ACCGCACTGTACTTGTGCACGTGTAGAGGACCTAATTACTTGCGACTGGA
GCAGTAGTACAAGTTCTGTACTCTACTTTGCCCGTCTAAATACTGCAGCT
AGGTAGATGGTGTCCTTCGATGTGAGTATGTGGGTAGAGTATCTGTTGTG
TATTGCCGTGAGTGGCGGTTCCCCCCCCCTGGGGGGGGGCACGCCAGGGG
CCTCGGAACACACTGGCAGCGACTGCAAGGCTTGGGTTTGCTTGCACACC
ATGGTTGTCCACGGGAGGCACGGCCTCTACCACGGCTGCAGTACTGCACT
GCAGCAACCGCACTGTACTTGTGCACGTGTAGAGGACCTAATTACTTGCG
ACTGGAGCAGTAGTACAAGTTCTGTACTCTACTTTGCCCGTCTAAATACT
GCAGCTAGGTAG
back to top