mRNA_S-ischiensis_contig8.19663.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19663.1
Unique NamemRNA_S-ischiensis_contig8.19663.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2973660..2975211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size331
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19663.1prot_S-ischiensis_contig8.19663.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2973660..2975211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.5137436-CDS-S-ischiensis_contig8:2973659..29737681622817262.5137436-CDS-S-ischiensis_contig8:2973659..2973768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2973660..2973768 +
1695740978.5306065-CDS-S-ischiensis_contig8:2973659..29737681695740978.5306065-CDS-S-ischiensis_contig8:2973659..2973768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2973660..2973768 +
1622817262.5248914-CDS-S-ischiensis_contig8:2973992..29740821622817262.5248914-CDS-S-ischiensis_contig8:2973992..2974082Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2973993..2974082 +
1695740978.539964-CDS-S-ischiensis_contig8:2973992..29740821695740978.539964-CDS-S-ischiensis_contig8:2973992..2974082Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2973993..2974082 +
1622817262.5362694-CDS-S-ischiensis_contig8:2975080..29752111622817262.5362694-CDS-S-ischiensis_contig8:2975080..2975211Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2975081..2975211 +
1695740978.5528073-CDS-S-ischiensis_contig8:2975080..29752111695740978.5528073-CDS-S-ischiensis_contig8:2975080..2975211Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2975081..2975211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19663.1

>prot_S-ischiensis_contig8.19663.1 ID=prot_S-ischiensis_contig8.19663.1|Name=mRNA_S-ischiensis_contig8.19663.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
QGGGGLPAVGAEEARQRGGRAEPPHGRAQRGRGQHAGAQDSVPGDPRRLP
GRPGGHEEGAAHTHIPDLLGRAPHALSPGGGEEGAHGAPQEHPPSAAPKM
ISRIGYCPRG
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mRNA from alignment at S-ischiensis_contig8:2973660..2975211+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19663.1 ID=mRNA_S-ischiensis_contig8.19663.1|Name=mRNA_S-ischiensis_contig8.19663.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1552bp|location=Sequence derived from alignment at S-ischiensis_contig8:2973660..2975211+ (Schizocladia ischiensis KU_0333)
CAAGGTGGTGGAGGCCTTCCTGCAGTCGGAGCGGAGGAGGCACGCCAGCG
AGGTGGCCGCGCAGAGCCGCCTCATGGCCGCGCACAGCGGGGCCGTGGTC
AACACGCAGGTACAGTAGCCAGGGTTGGCACTTAGAGGCTATTTTAGGGC
ATCACCGATGTCAGTTTGGCGAAACAGCACTTAGCAAAGGATGAGCAGGC
TTAAATTGACCAATGCAAAACTGGGAACGACAGGTAAAGGCGGTAGCCAG
GCATGTGCGGCGCCTCCCCTTCCACCTTGAGGAAGGGTTCGAGTACTGAC
GCTGCCTGTGCCCATCTTATAATCCCCGGGCAGGTGCTCAAGACTCTGTT
CCGGGGGACCCACGAAGACTTCCTGGCCGCCCTGGAGGGCATGAAGAAGG
AGCAGCCCACACACATATTCCAGGTGGGGGGCGGCGGTGGCCGGCCCCTT
GCAGGGGCGACAGCCGCTGTTGTGGAATACCTCCAAGTACAGTACTATGT
AGCGCAGTGGTGCGTGTAGGGACAAAGGATATTCCTTTTGCTACGAAATA
TGTTTCGGTCGAAGTACGAGCAATATCAATATCAGCGGTGCTGCCGCTGT
GCAGTAGAGCCAGCTGCCCGGCTAGCTCCGCTTCGTGCTTCCAGGGTTGT
TGGCATGTGAGCGCCGCTTGCCGCGGTACCCGCTCGAGGCTCTTGGCATT
TGTGCGGCTTCAAAAGATTGGCGCCAGGGCCCCGCCCGCTTCTTGTGCTA
GTGTAGCTGCTTTGGTGCACAGAATCATTGCCATCTTTTGCCCGCGCTGA
GTACTCACGACGAGCGCTGCCCGTAGCGCTACTTGCAGTACTCGTACAAG
CAGTACTGGCTTACGGTGAGATGCCGGCAGTCAGCGCCATCTGCACCAAC
TGTTTGCGACGAGCGCAGCCAGCCATGCTTACCAAACCAGCGCCACGACT
GCCGCCTCTACTCACTAAGTAGCCACGAGCGCTGTCCCCCGCACCTACTA
TAGATGTGCTTGGAAGTACCGTACAACCTGATGTAAGTACATCTGCACGC
CACACCAGCTATAGATTTGCTTGGAAGTACCGTACAACCTGATGTAAGTA
CATCTGCACGCCGCGCCTGCTATAGATTTGCTTGGAAGTACCGTACAACC
TGATGTGCATCTGCACGCCACACCTACTATAGGTGTGCTTGCCACGAGCG
CTGGCTGTCTCCCACATCCACTACCGTTCTATAGATGCCCCCACACCTAC
TGTAAACAGCGATTTGTAATCGAAAAATAGGTACGAGTATGTTAGGTGCG
GCATTTGCTACGTGCCACTGTATGCGCACCGCCTGCCACCCTAACCATGT
CCTCTGTGCGGAATCCTTCCAGTGACCCACGCACGCACCGTCAATCGACC
CGTCCGTCCGCACCGGCCCAGATCTTCTCGGGAGAGCCCCGCATGCGCTT
TCACCTGGAGGTGGAGAAGAGGGTGCGCACGGCGCTCCTCAAGAGCACCC
GCCGTCCGCTGCCCCCAAGATGATCTCGAGGATTGGCTATTGCCCTCGGG
GG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2973660..2975211+

>mRNA_S-ischiensis_contig8.19663.1 ID=mRNA_S-ischiensis_contig8.19663.1|Name=mRNA_S-ischiensis_contig8.19663.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig8:2973660..2975211+ (Schizocladia ischiensis KU_0333)
CAAGGTGGTGGAGGCCTTCCTGCAGTCGGAGCGGAGGAGGCACGCCAGCG
AGGTGGCCGCGCAGAGCCGCCTCATGGCCGCGCACAGCGGGGCCGTGGTC
AACACGCAGCAAGGTGGTGGAGGCCTTCCTGCAGTCGGAGCGGAGGAGGC
ACGCCAGCGAGGTGGCCGCGCAGAGCCGCCTCATGGCCGCGCACAGCGGG
GCCGTGGTCAACACGCAGGTGCTCAAGACTCTGTTCCGGGGGACCCACGA
AGACTTCCTGGCCGCCCTGGAGGGCATGAAGAAGGAGCAGCCCACACACA
TATTCCAGGTGCTCAAGACTCTGTTCCGGGGGACCCACGAAGACTTCCTG
GCCGCCCTGGAGGGCATGAAGAAGGAGCAGCCCACACACATATTCCAGAT
CTTCTCGGGAGAGCCCCGCATGCGCTTTCACCTGGAGGTGGAGAAGAGGG
TGCGCACGGCGCTCCTCAAGAGCACCCGCCGTCCGCTGCCCCCAAGATGA
TCTCGAGGATTGGCTATTGCCCTCGGGGGATCTTCTCGGGAGAGCCCCGC
ATGCGCTTTCACCTGGAGGTGGAGAAGAGGGTGCGCACGGCGCTCCTCAA
GAGCACCCGCCGTCCGCTGCCCCCAAGATGATCTCGAGGATTGGCTATTG
CCCTCGGGGG
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