mRNA_S-ischiensis_contig8.19660.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19660.1
Unique NamemRNA_S-ischiensis_contig8.19660.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2948042..2949072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.3143854-CDS-S-ischiensis_contig8:2948041..29481571622817262.3143854-CDS-S-ischiensis_contig8:2948041..2948157Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2948042..2948157 +
1695740978.4153898-CDS-S-ischiensis_contig8:2948041..29481571695740978.4153898-CDS-S-ischiensis_contig8:2948041..2948157Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2948042..2948157 +
1622817262.328304-CDS-S-ischiensis_contig8:2948705..29490721622817262.328304-CDS-S-ischiensis_contig8:2948705..2949072Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2948706..2949072 +
1695740978.4254491-CDS-S-ischiensis_contig8:2948705..29490721695740978.4254491-CDS-S-ischiensis_contig8:2948705..2949072Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2948706..2949072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19660.1prot_S-ischiensis_contig8.19660.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2948042..2949072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19660.1

>prot_S-ischiensis_contig8.19660.1 ID=prot_S-ischiensis_contig8.19660.1|Name=mRNA_S-ischiensis_contig8.19660.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=161bp
GVAAAGAVAAVVAAMQAFSRVVEVQEQGCLAVAAAAAGGYYLTDEGIRPE
ERPGSYTDISELGSPYDTVFAALRLARGPGASHRGANETDNEPPETAAAN
TTASMDDEAPELTAAHQQLGHPALAEHACLALANLIGATLTARGPSTTTT
AAAAATPLGPW
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mRNA from alignment at S-ischiensis_contig8:2948042..2949072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19660.1 ID=mRNA_S-ischiensis_contig8.19660.1|Name=mRNA_S-ischiensis_contig8.19660.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1031bp|location=Sequence derived from alignment at S-ischiensis_contig8:2948042..2949072+ (Schizocladia ischiensis KU_0333)
GGGGTGGCGGCGGCAGGAGCGGTGGCAGCAGTTGTGGCGGCGATGCAAGC
TTTCTCGCGGGTGGTGGAGGTGCAGGAGCAGGGCTGCTTGGCGGTGGCGG
CCGCGGCAGCCGGCGGGTGAGAGTAGTTGTTGGTCTTTTGCGCGGTGGGA
AGCGAGATGAAAACAAATGTGACTACCGTAAGTAGTACCTGCTTGGATGC
AATAGAAAGCCACAAGTGAATACTCGAGGTAACACCACAGTTACACGGAC
ACGCTCTCCACGAGCTTGGACTTGTGACTGGGAGGAGAGAGAATGGCGTA
GTGTGATTGGGAGGAGAGGGAACGGCGGAACGCCTGAGTGCAGGTGCACC
AGACTGTCAGGCACACGCGCGGACAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGGGGGGGGTGTTCGCGT
GGATGACAGGCGCGCGTCACAATCCCTGTACAACAACTCGTCACGGCTCA
GCGGAAGAAAGCGCAGTTCTTATTTTTGCCAGGCCAATCGCTTTTCCCGC
CAACTAACACGGCCACAACCACGACCACGAACTGCCACCATCACCACCAC
CACTGCCCCCCCCCTCCCCCCGCAAAAAAAAACCGCCGCACCACCACCTC
CCCTGGTGACCCAGCTACTACCTGACGGACGAAGGAATCCGGCCAGAGGA
GCGCCCTGGCTCCTACACGGATATCTCGGAGCTGGGCAGCCCTTACGACA
CCGTCTTCGCCGCCCTCCGCCTCGCCCGCGGCCCCGGGGCCAGCCATAGG
GGCGCAAACGAAACCGACAACGAACCCCCCGAAACTGCCGCCGCAAACAC
GACTGCCTCCATGGACGATGAAGCTCCCGAGCTCACGGCCGCACACCAAC
AACTGGGGCACCCGGCGCTGGCGGAGCACGCCTGCCTAGCCCTGGCAAAC
CTGATCGGCGCAACTTTGACTGCCCGGGGCCCGTCAACCACCACCACCGC
CGCCGCTGCCGCCACCCCGCTGGGGCCCTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2948042..2949072+

>mRNA_S-ischiensis_contig8.19660.1 ID=mRNA_S-ischiensis_contig8.19660.1|Name=mRNA_S-ischiensis_contig8.19660.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=966bp|location=Sequence derived from alignment at S-ischiensis_contig8:2948042..2949072+ (Schizocladia ischiensis KU_0333)
GGGGTGGCGGCGGCAGGAGCGGTGGCAGCAGTTGTGGCGGCGATGCAAGC
TTTCTCGCGGGTGGTGGAGGTGCAGGAGCAGGGCTGCTTGGCGGTGGCGG
CCGCGGCAGCCGGCGGGGGGTGGCGGCGGCAGGAGCGGTGGCAGCAGTTG
TGGCGGCGATGCAAGCTTTCTCGCGGGTGGTGGAGGTGCAGGAGCAGGGC
TGCTTGGCGGTGGCGGCCGCGGCAGCCGGCGGCTACTACCTGACGGACGA
AGGAATCCGGCCAGAGGAGCGCCCTGGCTCCTACACGGATATCTCGGAGC
TGGGCAGCCCTTACGACACCGTCTTCGCCGCCCTCCGCCTCGCCCGCGGC
CCCGGGGCCAGCCATAGGGGCGCAAACGAAACCGACAACGAACCCCCCGA
AACTGCCGCCGCAAACACGACTGCCTCCATGGACGATGAAGCTCCCGAGC
TCACGGCCGCACACCAACAACTGGGGCACCCGGCGCTGGCGGAGCACGCC
TGCCTAGCCCTGGCAAACCTGATCGGCGCAACTTTGACTGCCCGGGGCCC
GTCAACCACCACCACCGCCGCCGCTGCCGCCACCCCGCTGGGGCCCTGGC
TACTACCTGACGGACGAAGGAATCCGGCCAGAGGAGCGCCCTGGCTCCTA
CACGGATATCTCGGAGCTGGGCAGCCCTTACGACACCGTCTTCGCCGCCC
TCCGCCTCGCCCGCGGCCCCGGGGCCAGCCATAGGGGCGCAAACGAAACC
GACAACGAACCCCCCGAAACTGCCGCCGCAAACACGACTGCCTCCATGGA
CGATGAAGCTCCCGAGCTCACGGCCGCACACCAACAACTGGGGCACCCGG
CGCTGGCGGAGCACGCCTGCCTAGCCCTGGCAAACCTGATCGGCGCAACT
TTGACTGCCCGGGGCCCGTCAACCACCACCACCGCCGCCGCTGCCGCCAC
CCCGCTGGGGCCCTGG
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