mRNA_S-ischiensis_contig8.19650.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19650.1
Unique NamemRNA_S-ischiensis_contig8.19650.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2858490..2859566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size199
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.8497093-CDS-S-ischiensis_contig8:2858489..28585641622817261.8497093-CDS-S-ischiensis_contig8:2858489..2858564Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2858490..2858564 +
1695740978.0845735-CDS-S-ischiensis_contig8:2858489..28585641695740978.0845735-CDS-S-ischiensis_contig8:2858489..2858564Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2858490..2858564 +
1622817261.8624122-CDS-S-ischiensis_contig8:2859442..28595651622817261.8624122-CDS-S-ischiensis_contig8:2859442..2859565Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2859443..2859565 +
1695740978.0956001-CDS-S-ischiensis_contig8:2859442..28595651695740978.0956001-CDS-S-ischiensis_contig8:2859442..2859565Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2859443..2859565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19650.1prot_S-ischiensis_contig8.19650.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2858490..2859565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19650.1

>prot_S-ischiensis_contig8.19650.1 ID=prot_S-ischiensis_contig8.19650.1|Name=mRNA_S-ischiensis_contig8.19650.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=66bp
GGGDRIGEKKAEGAGVSAAEQWTLKLALPDGRKVVLRLPSSTTLSDLKQR
VAAETGIAPADQALAV
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mRNA from alignment at S-ischiensis_contig8:2858490..2859566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19650.1 ID=mRNA_S-ischiensis_contig8.19650.1|Name=mRNA_S-ischiensis_contig8.19650.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1077bp|location=Sequence derived from alignment at S-ischiensis_contig8:2858490..2859566+ (Schizocladia ischiensis KU_0333)
GGGGGGGGAGACAGGATTGGAGAGAAGAAGGCTGAGGGGGCGGGGGTCTC
AGCAGCGGAGCAGTGGACTCTGAAGGTCAGACTTTTTCGGATGCCTGGAC
GTGCTTTGAGAGACATGCTGCCTTCATTCAGTCCTCTGTGCTCCTTAAAA
GTGTTTGGGGTACGTGGCTTCCGTGTACGAGTACTGCTGTACTGCACTGG
TGCTGCTGCTCAAGCGCACCGTGCATAGTACAGTGTCGTGCCTGTGCTTT
TACGTGGGCTGTGCCAATGTGATGGCCAGTGACGCCCTGCAAGGCGTGCG
TCAATTCAAGCATTCACAAGTACTTGCACACAGCGGTCGTCGAGCTGAGG
GCCCTTCTCAATGCTGCCAATACATATCTATATTCAGCACTTTTTTGGGG
GGGGCCGAAAGTGCCACCAATGGAAGAAATACTTGCGGAACGGTGTTGTT
CTTGCGACCGAGCGCCCCACCCCCCGGGGGCGGGAGGCAGGTCACTCACC
GGCAAAGAAGAAGGCCGCGGGGGCACACACCAGGCGACGGCCGCCAATTT
GGAACAACCATAATTGAACCGTCGCTTGTCAAGTGCCTGTTCCGCCAAAA
AAGGCCAGAGTTTTGGCGTCGATAGGACCGGCCACAAGTGCTCGGTTTTC
CGGTTCTCCTTCGTCGCCCCTTCACCGCCCCGCTCCCCCTCCTCCCCCTC
CCCCTCCCCTATCCCCATCCTCCCCTTCCCCCTCCCGCTACCCTACACGT
TGCCCTTGCCCTTGCCCTCCCCCCTCCCCTTCTCCTGCTCCTCCTCCTGC
TTACCCCCTCCACCCCCCCCCCCCCCTCTCCCCCTTCTCCTGCTCCTGCC
CCTGCTAACCCCCTCCACCCCTCCCCACCCCCCCCCTCCCCCTTCTCCTG
CTCCTCCTCCTGCTAACCCCCTCCACCCCCCTCCCCCAAAAAAAAAAAAA
CAGCTGGCGCTACCGGACGGCCGGAAAGTGGTCCTCCGCCTTCCCTCATC
CACCACTCTCAGTGACCTCAAGCAGAGGGTTGCCGCCGAGACAGGCATCG
CACCCGCAGATCAGGCACTTGCTGTGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2858490..2859566+

>mRNA_S-ischiensis_contig8.19650.1 ID=mRNA_S-ischiensis_contig8.19650.1|Name=mRNA_S-ischiensis_contig8.19650.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=396bp|location=Sequence derived from alignment at S-ischiensis_contig8:2858490..2859566+ (Schizocladia ischiensis KU_0333)
GGGGGGGGAGACAGGATTGGAGAGAAGAAGGCTGAGGGGGCGGGGGTCTC
AGCAGCGGAGCAGTGGACTCTGAAGGGGGGGGGAGACAGGATTGGAGAGA
AGAAGGCTGAGGGGGCGGGGGTCTCAGCAGCGGAGCAGTGGACTCTGAAG
CTGGCGCTACCGGACGGCCGGAAAGTGGTCCTCCGCCTTCCCTCATCCAC
CACTCTCAGTGACCTCAAGCAGAGGGTTGCCGCCGAGACAGGCATCGCAC
CCGCAGATCAGGCACTTGCTGTGCTGGCGCTACCGGACGGCCGGAAAGTG
GTCCTCCGCCTTCCCTCATCCACCACTCTCAGTGACCTCAAGCAGAGGGT
TGCCGCCGAGACAGGCATCGCACCCGCAGATCAGGCACTTGCTGTG
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