mRNA_S-ischiensis_contig8.19643.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19643.1
Unique NamemRNA_S-ischiensis_contig8.19643.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2795059..2796112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1054
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19643.1prot_S-ischiensis_contig8.19643.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2795204..2796058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.1524265-UTR-S-ischiensis_contig8:2795058..27952031622817268.1524265-UTR-S-ischiensis_contig8:2795058..2795203Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2795059..2795203 +
1695740981.8711207-UTR-S-ischiensis_contig8:2795058..27952031695740981.8711207-UTR-S-ischiensis_contig8:2795058..2795203Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2795059..2795203 +
1622817268.1807535-UTR-S-ischiensis_contig8:2796058..27961121622817268.1807535-UTR-S-ischiensis_contig8:2796058..2796112Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2796059..2796112 +
1695740981.9005833-UTR-S-ischiensis_contig8:2796058..27961121695740981.9005833-UTR-S-ischiensis_contig8:2796058..2796112Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2796059..2796112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.1688852-CDS-S-ischiensis_contig8:2795203..27960581622817268.1688852-CDS-S-ischiensis_contig8:2795203..2796058Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2795204..2796058 +
1695740981.885633-CDS-S-ischiensis_contig8:2795203..27960581695740981.885633-CDS-S-ischiensis_contig8:2795203..2796058Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2795204..2796058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19643.1

>prot_S-ischiensis_contig8.19643.1 ID=prot_S-ischiensis_contig8.19643.1|Name=mRNA_S-ischiensis_contig8.19643.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=285bp
MAAWKRTMAAWKRTCGLRQTREVIGNLVDPGPQVPSLQPEVLCLAQSDHP
RMRSPTCSMGYGEPRLHDASKAALKSGAVAAIQTCTKACGFAVPAGGPPP
GPMKSSENVASAQLRLVRLSNARAAGRKKKLSTNACMQVQCAGERSVSSH
ASEVDQLCVPCADGGGGAGGGGRKKGRTLEKKNGHGDRTKHGGSSSTSFV
LPPPLLSTVVPSYCIYVTSTYYNSCRVAPGCFYPRGTARTVKGLRLALPC
NTTYTTRQTPTTVLGSTSQASKRLPARPCTRIQT*
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mRNA from alignment at S-ischiensis_contig8:2795059..2796112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19643.1 ID=mRNA_S-ischiensis_contig8.19643.1|Name=mRNA_S-ischiensis_contig8.19643.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1054bp|location=Sequence derived from alignment at S-ischiensis_contig8:2795059..2796112+ (Schizocladia ischiensis KU_0333)
CCCTCGTCGAATTGGCGCCAATGAATGGGTGCATTGACTCGCAGGGCAGC
CTGAGAAAAAGGCTTGAGGAGGTACAGGGCACGGTCAAGGCCGCGCGTGA
AAGAAGAAGGGCAATCTCCTGTGCCATGGCAGCAGGACGCGGGCCATGGC
AGCCTGGAAGCGAACCATGGCAGCCTGGAAGCGCACTTGTGGCCTGAGAC
AGACTCGGGAAGTGATAGGCAACTTGGTTGATCCAGGCCCCCAAGTACCA
TCTCTCCAGCCTGAGGTACTGTGCTTAGCTCAAAGTGATCATCCACGGAT
GCGGTCACCGACATGCTCCATGGGGTACGGGGAGCCGCGGCTGCACGATG
CATCAAAGGCCGCGCTAAAATCTGGCGCGGTCGCTGCGATACAGACCTGC
ACAAAAGCGTGCGGGTTCGCCGTGCCCGCCGGCGGGCCACCGCCGGGCCC
CATGAAATCATCCGAAAATGTAGCAAGCGCCCAGCTCAGGCTGGTCCGAC
TCAGTAATGCCCGGGCCGCGGGGCGCAAGAAGAAGCTCTCTACAAATGCT
TGCATGCAGGTGCAGTGCGCGGGCGAGCGAAGCGTGTCGTCGCACGCATC
AGAGGTCGACCAACTCTGCGTCCCGTGCGCTGACGGTGGTGGTGGTGCTG
GTGGTGGTGGGCGAAAAAAAGGACGAACTTTGGAAAAAAAAAATGGACAT
GGCGACCGGACGAAACATGGCGGCTCCTCCTCCACGTCGTTCGTCCTCCC
TCCTCCGCTGCTCAGTACAGTAGTACCCTCGTACTGTATATATGTTACTA
GTACTTACTATAACTCTTGTCGAGTCGCACCTGGTTGTTTCTACCCGCGC
GGAACTGCGCGCACCGTAAAAGGCCTCAGGCTAGCTCTCCCCTGCAATAC
AACCTATACTACTCGTCAAACCCCTACCACAGTGCTCGGTAGCACCTCTC
AGGCGTCGAAGCGACTCCCTGCCCGTCCCTGCACACGCATTCAAACTTGA
ACAAACTCCCAAAGGGGCTGAGCTTTCGCCCGGCCAGCATGCCCGGCCAG
AACA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2795059..2796112+

>mRNA_S-ischiensis_contig8.19643.1 ID=mRNA_S-ischiensis_contig8.19643.1|Name=mRNA_S-ischiensis_contig8.19643.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1710bp|location=Sequence derived from alignment at S-ischiensis_contig8:2795059..2796112+ (Schizocladia ischiensis KU_0333)
ATGGCAGCCTGGAAGCGAACCATGGCAGCCTGGAAGCGCACTTGTGGCCT
GAGACAGACTCGGGAAGTGATAGGCAACTTGGTTGATCCAGGCCCCCAAG
TACCATCTCTCCAGCCTGAGGTACTGTGCTTAGCTCAAAGTGATCATCCA
CGGATGCGGTCACCGACATGCTCCATGGGGTACGGGGAGCCGCGGCTGCA
CGATGCATCAAAGGCCGCGCTAAAATCTGGCGCGGTCGCTGCGATACAGA
CCTGCACAAAAGCGTGCGGGTTCGCCGTGCCCGCCGGCGGGCCACCGCCG
GGCCCCATGAAATCATCCGAAAATGTAGCAAGCGCCCAGCTCAGGCTGGT
CCGACTCAGTAATGCCCGGGCCGCGGGGCGCAAGAAGAAGCTCTCTACAA
ATGCTTGCATGCAGGTGCAGTGCGCGGGCGAGCGAAGCGTGTCGTCGCAC
GCATCAGAGGTCGACCAACTCTGCGTCCCGTGCGCTGACGGTGGTGGTGG
TGCTGGTGGTGGTGGGCGAAAAAAAGGACGAACTTTGGAAAAAAAAAATG
GACATGGCGACCGGACGAAACATGGCGGCTCCTCCTCCACGTCGTTCGTC
CTCCCTCCTCCGCTGCTCAGTACAGTAGTACCCTCGTACTGTATATATGT
TACTAGTACTTACTATAACTCTTGTCGAGTCGCACCTGGTTGTTTCTACC
CGCGCGGAACTGCGCGCACCGTAAAAGGCCTCAGGCTAGCTCTCCCCTGC
AATACAACCTATACTACTCGTCAAACCCCTACCACAGTGCTCGGTAGCAC
CTCTCAGGCGTCGAAGCGACTCCCTGCCCGTCCCTGCACACGCATTCAAA
CTTGAATGGCAGCCTGGAAGCGAACCATGGCAGCCTGGAAGCGCACTTGT
GGCCTGAGACAGACTCGGGAAGTGATAGGCAACTTGGTTGATCCAGGCCC
CCAAGTACCATCTCTCCAGCCTGAGGTACTGTGCTTAGCTCAAAGTGATC
ATCCACGGATGCGGTCACCGACATGCTCCATGGGGTACGGGGAGCCGCGG
CTGCACGATGCATCAAAGGCCGCGCTAAAATCTGGCGCGGTCGCTGCGAT
ACAGACCTGCACAAAAGCGTGCGGGTTCGCCGTGCCCGCCGGCGGGCCAC
CGCCGGGCCCCATGAAATCATCCGAAAATGTAGCAAGCGCCCAGCTCAGG
CTGGTCCGACTCAGTAATGCCCGGGCCGCGGGGCGCAAGAAGAAGCTCTC
TACAAATGCTTGCATGCAGGTGCAGTGCGCGGGCGAGCGAAGCGTGTCGT
CGCACGCATCAGAGGTCGACCAACTCTGCGTCCCGTGCGCTGACGGTGGT
GGTGGTGCTGGTGGTGGTGGGCGAAAAAAAGGACGAACTTTGGAAAAAAA
AAATGGACATGGCGACCGGACGAAACATGGCGGCTCCTCCTCCACGTCGT
TCGTCCTCCCTCCTCCGCTGCTCAGTACAGTAGTACCCTCGTACTGTATA
TATGTTACTAGTACTTACTATAACTCTTGTCGAGTCGCACCTGGTTGTTT
CTACCCGCGCGGAACTGCGCGCACCGTAAAAGGCCTCAGGCTAGCTCTCC
CCTGCAATACAACCTATACTACTCGTCAAACCCCTACCACAGTGCTCGGT
AGCACCTCTCAGGCGTCGAAGCGACTCCCTGCCCGTCCCTGCACACGCAT
TCAAACTTGA
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