mRNA_S-ischiensis_contig8.19635.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: D7FL71_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL71_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 1.110e-14 Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 2
Query: 71 TASTPNARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
T +T + A+R+ SG + +A L+ WY LT +YSVYN A+LQ+FPFP+T++TAE G GV+++LP W LG++R P L M Q
Sbjct: 44 TDATSTPKTAKRRGFGSGPVGIAVATLA---WYGLTVVYSVYNTAVLQVFPFPLTVLTAELGAGVLLILPAWTLGVIRTPNLRMSQ 126
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2K1IU74_PHYPA (TPT domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IU74_PHYPA) HSP 1 Score: 59.3 bits (142), Expect = 5.370e-8 Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = 2
Query: 5 SASPEGLGKMETDAGPGSRTISTASTPNARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
S+S +GLG E DAG G ++ P+ R S L L G+WY +++YNK +L++FP+P+T+ + +F VG ++ L W GL + PQ+ + Q
Sbjct: 95 SSSSDGLGG-EADAGSGLESVQAGGVPS--------RESKLAETLQLGSLFGLWYMFNICFNIYNKQVLKVFPYPITITSLQFAVGAVIALLTWFSGLHKRPQISLAQ 193
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2G5F1W8_AQUCA (TPT domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F1W8_AQUCA) HSP 1 Score: 57.4 bits (137), Expect = 2.380e-7 Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 2
Query: 86 NARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
N R + S L + L + +G+WY LT ++++YNK +L ++PFP+T+ T FG+G ++VL W L + P++ Q
Sbjct: 85 NEEEVERPSTTSTLIKTLELGVLIGLWYILTIMFNIYNKQVLTVYPFPLTISTLHFGMGTVIVLLMWTFNLHKKPKISRSQ 165
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2G5F1J2_AQUCA (TPT domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5F1J2_AQUCA) HSP 1 Score: 57.4 bits (137), Expect = 2.520e-7 Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 2
Query: 86 NARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
N R + S L + L + +G+WY LT ++++YNK +L ++PFP+T+ T FG+G ++VL W L + P++ Q
Sbjct: 85 NEEEVERPSTTSTLIKTLELGVLIGLWYILTIMFNIYNKQVLTVYPFPLTISTLHFGMGTVIVLLMWTFNLHKKPKISRSQ 165
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: W1NXM4_AMBTC (TPT domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NXM4_AMBTC) HSP 1 Score: 56.2 bits (134), Expect = 6.420e-7 Identity = 31/90 (34.44%), Postives = 53/90 (58.89%), Query Frame = 2
Query: 47 GPGSRTISTASTPNARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQL 316
GP R ++AS P + ++ + S L + L G+WY +++YNK +L++FPFP+T+ T +F VG ++VL W GL + P++
Sbjct: 75 GPDFRVGASASVPESADSKSSS--SSLIQTLQLGALFGLWYLFNIYFNIYNKQVLKVFPFPITITTLQFAVGTVLVLIMWSTGLYKKPKI 162
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: UPI001CC5812C (phosphoenolpyruvate/phosphate translocator 1, chloroplastic-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC5812C) HSP 1 Score: 55.1 bits (131), Expect = 1.640e-6 Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 2
Query: 53 GSRTISTASTPNARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
G + +T A A+ S L R L L G+WY +++YNK +L++FPFP+T+ T +F G ++V+ W L L + P++ Q
Sbjct: 80 GKKNFEVEATSIPESAGESAKSSNLIRTLQLGLLFGLWYLFNIYFNIYNKQVLKVFPFPVTVTTFQFFTGTVLVILMWTLNLYKRPKISSSQ 171
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2P2PJ03_RHIMU (TPT domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2PJ03_RHIMU) HSP 1 Score: 55.1 bits (131), Expect = 1.640e-6 Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2
Query: 119 SGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
SGL R L G+WY L ++++NK +L+++PFP T+ +FG G +++L W L + P+L Q
Sbjct: 103 SGLVRTLQLGSMFGIWYLLNIYFNIFNKQVLEMYPFPATVTAFQFGFGTLMILTMWTFNLYKRPKLTRSQ 172
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2J6KRQ9_LACSA (TPT domain-containing protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KRQ9_LACSA) HSP 1 Score: 54.3 bits (129), Expect = 3.040e-6 Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 2
Query: 128 GRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
GR L GVWY L ++++NK +L++FP+PMT+ T +FG G +++L W L L P++ Q
Sbjct: 96 GRNLQLAAMFGVWYLLNIYFNIFNKQVLKVFPYPMTVTTFQFGCGTVMILIMWALKLHPRPKIYKSQ 162
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A067FQH8_CITSI (TPT domain-containing protein n=4 Tax=Citrus TaxID=2706 RepID=A0A067FQH8_CITSI) HSP 1 Score: 54.3 bits (129), Expect = 3.040e-6 Identity = 24/61 (39.34%), Postives = 41/61 (67.21%), Query Frame = 2
Query: 125 LGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRP 307
L R + +L +G+WY ++++YNK +L+++ FP+T+ T +FGVG ++VL W L RP
Sbjct: 102 LSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRP 162
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2G5CD44_AQUCA (TPT domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CD44_AQUCA) HSP 1 Score: 54.3 bits (129), Expect = 3.040e-6 Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 2
Query: 158 GVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
G+WY +++YNK +L++FPFP+T+ T +F VG ++V W L L + PQ+ Q
Sbjct: 113 GLWYLFNIYFNIYNKQVLKVFPFPVTITTVQFAVGTVIVFFMWALNLHKKPQITTSQ 169 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19635.1 >prot_S-ischiensis_contig8.19635.1 ID=prot_S-ischiensis_contig8.19635.1|Name=mRNA_S-ischiensis_contig8.19635.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=99bp METDAGPGSRTISTASTPNARPARRQARISGLGRLLMAVLSVGVWYALTAback to top mRNA from alignment at S-ischiensis_contig8:2703601..2704324+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19635.1 ID=mRNA_S-ischiensis_contig8.19635.1|Name=mRNA_S-ischiensis_contig8.19635.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=724bp|location=Sequence derived from alignment at S-ischiensis_contig8:2703601..2704324+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:2703601..2704324+ >mRNA_S-ischiensis_contig8.19635.1 ID=mRNA_S-ischiensis_contig8.19635.1|Name=mRNA_S-ischiensis_contig8.19635.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=594bp|location=Sequence derived from alignment at S-ischiensis_contig8:2703601..2704324+ (Schizocladia ischiensis KU_0333)back to top |