mRNA_S-ischiensis_contig8.19635.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19635.1
Unique NamemRNA_S-ischiensis_contig8.19635.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: D7FL71_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL71_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.110e-14
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 2
Query:   71 TASTPNARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
            T +T   + A+R+   SG   + +A L+   WY LT +YSVYN A+LQ+FPFP+T++TAE G GV+++LP W LG++R P L M Q
Sbjct:   44 TDATSTPKTAKRRGFGSGPVGIAVATLA---WYGLTVVYSVYNTAVLQVFPFPLTVLTAELGAGVLLILPAWTLGVIRTPNLRMSQ 126          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2K1IU74_PHYPA (TPT domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IU74_PHYPA)

HSP 1 Score: 59.3 bits (142), Expect = 5.370e-8
Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    5 SASPEGLGKMETDAGPGSRTISTASTPNARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
            S+S +GLG  E DAG G  ++     P+        R S L   L      G+WY     +++YNK +L++FP+P+T+ + +F VG ++ L  W  GL + PQ+ + Q
Sbjct:   95 SSSSDGLGG-EADAGSGLESVQAGGVPS--------RESKLAETLQLGSLFGLWYMFNICFNIYNKQVLKVFPYPITITSLQFAVGAVIALLTWFSGLHKRPQISLAQ 193          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2G5F1W8_AQUCA (TPT domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F1W8_AQUCA)

HSP 1 Score: 57.4 bits (137), Expect = 2.380e-7
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 2
Query:   86 NARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
            N     R +  S L + L   + +G+WY LT ++++YNK +L ++PFP+T+ T  FG+G ++VL  W   L + P++   Q
Sbjct:   85 NEEEVERPSTTSTLIKTLELGVLIGLWYILTIMFNIYNKQVLTVYPFPLTISTLHFGMGTVIVLLMWTFNLHKKPKISRSQ 165          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2G5F1J2_AQUCA (TPT domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5F1J2_AQUCA)

HSP 1 Score: 57.4 bits (137), Expect = 2.520e-7
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 2
Query:   86 NARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
            N     R +  S L + L   + +G+WY LT ++++YNK +L ++PFP+T+ T  FG+G ++VL  W   L + P++   Q
Sbjct:   85 NEEEVERPSTTSTLIKTLELGVLIGLWYILTIMFNIYNKQVLTVYPFPLTISTLHFGMGTVIVLLMWTFNLHKKPKISRSQ 165          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: W1NXM4_AMBTC (TPT domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NXM4_AMBTC)

HSP 1 Score: 56.2 bits (134), Expect = 6.420e-7
Identity = 31/90 (34.44%), Postives = 53/90 (58.89%), Query Frame = 2
Query:   47 GPGSRTISTASTPNARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQL 316
            GP  R  ++AS P +  ++  +  S L + L      G+WY     +++YNK +L++FPFP+T+ T +F VG ++VL  W  GL + P++
Sbjct:   75 GPDFRVGASASVPESADSKSSS--SSLIQTLQLGALFGLWYLFNIYFNIYNKQVLKVFPFPITITTLQFAVGTVLVLIMWSTGLYKKPKI 162          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: UPI001CC5812C (phosphoenolpyruvate/phosphate translocator 1, chloroplastic-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC5812C)

HSP 1 Score: 55.1 bits (131), Expect = 1.640e-6
Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 2
Query:   53 GSRTISTASTPNARPARRQARISGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
            G +     +T     A   A+ S L R L   L  G+WY     +++YNK +L++FPFP+T+ T +F  G ++V+  W L L + P++   Q
Sbjct:   80 GKKNFEVEATSIPESAGESAKSSNLIRTLQLGLLFGLWYLFNIYFNIYNKQVLKVFPFPVTVTTFQFFTGTVLVILMWTLNLYKRPKISSSQ 171          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2P2PJ03_RHIMU (TPT domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2PJ03_RHIMU)

HSP 1 Score: 55.1 bits (131), Expect = 1.640e-6
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2
Query:  119 SGLGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
            SGL R L      G+WY L   ++++NK +L+++PFP T+   +FG G +++L  W   L + P+L   Q
Sbjct:  103 SGLVRTLQLGSMFGIWYLLNIYFNIFNKQVLEMYPFPATVTAFQFGFGTLMILTMWTFNLYKRPKLTRSQ 172          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2J6KRQ9_LACSA (TPT domain-containing protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KRQ9_LACSA)

HSP 1 Score: 54.3 bits (129), Expect = 3.040e-6
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 2
Query:  128 GRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
            GR L      GVWY L   ++++NK +L++FP+PMT+ T +FG G +++L  W L L   P++   Q
Sbjct:   96 GRNLQLAAMFGVWYLLNIYFNIFNKQVLKVFPYPMTVTTFQFGCGTVMILIMWALKLHPRPKIYKSQ 162          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A067FQH8_CITSI (TPT domain-containing protein n=4 Tax=Citrus TaxID=2706 RepID=A0A067FQH8_CITSI)

HSP 1 Score: 54.3 bits (129), Expect = 3.040e-6
Identity = 24/61 (39.34%), Postives = 41/61 (67.21%), Query Frame = 2
Query:  125 LGRLLMAVLSVGVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRP 307
            L R +  +L +G+WY    ++++YNK +L+++ FP+T+ T +FGVG ++VL  W   L RP
Sbjct:  102 LSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRP 162          
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Match: A0A2G5CD44_AQUCA (TPT domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CD44_AQUCA)

HSP 1 Score: 54.3 bits (129), Expect = 3.040e-6
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 2
Query:  158 GVWYALTALYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ 328
            G+WY     +++YNK +L++FPFP+T+ T +F VG ++V   W L L + PQ+   Q
Sbjct:  113 GLWYLFNIYFNIYNKQVLKVFPFPVTITTVQFAVGTVIVFFMWALNLHKKPQITTSQ 169          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL71_ECTSI1.110e-1447.67TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2K1IU74_PHYPA5.370e-833.33TPT domain-containing protein n=1 Tax=Physcomitriu... [more]
A0A2G5F1W8_AQUCA2.380e-734.57TPT domain-containing protein n=1 Tax=Aquilegia co... [more]
A0A2G5F1J2_AQUCA2.520e-734.57TPT domain-containing protein n=2 Tax=Thalictroide... [more]
W1NXM4_AMBTC6.420e-734.44TPT domain-containing protein n=1 Tax=Amborella tr... [more]
UPI001CC5812C1.640e-632.61phosphoenolpyruvate/phosphate translocator 1, chlo... [more]
A0A2P2PJ03_RHIMU1.640e-635.71TPT domain-containing protein n=1 Tax=Rhizophora m... [more]
A0A2J6KRQ9_LACSA3.040e-638.81TPT domain-containing protein n=2 Tax=Lactuca TaxI... [more]
A0A067FQH8_CITSI3.040e-639.34TPT domain-containing protein n=4 Tax=Citrus TaxID... [more]
A0A2G5CD44_AQUCA3.040e-640.35TPT domain-containing protein n=2 Tax=Thalictroide... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2703601..2704324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D7FL71
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size328
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19635.1prot_S-ischiensis_contig8.19635.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2703632..2704324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.229069-UTR-S-ischiensis_contig8:2703600..27036311622817294.229069-UTR-S-ischiensis_contig8:2703600..2703631Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2703601..2703631 +
1695741003.020036-UTR-S-ischiensis_contig8:2703600..27036311695741003.020036-UTR-S-ischiensis_contig8:2703600..2703631Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2703601..2703631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.2414272-CDS-S-ischiensis_contig8:2703631..27038141622817294.2414272-CDS-S-ischiensis_contig8:2703631..2703814Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2703632..2703814 +
1695741003.0366492-CDS-S-ischiensis_contig8:2703631..27038141695741003.0366492-CDS-S-ischiensis_contig8:2703631..2703814Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2703632..2703814 +
1622817294.2517707-CDS-S-ischiensis_contig8:2704210..27043241622817294.2517707-CDS-S-ischiensis_contig8:2704210..2704324Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2704211..2704324 +
1695741003.0534558-CDS-S-ischiensis_contig8:2704210..27043241695741003.0534558-CDS-S-ischiensis_contig8:2704210..2704324Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2704211..2704324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19635.1

>prot_S-ischiensis_contig8.19635.1 ID=prot_S-ischiensis_contig8.19635.1|Name=mRNA_S-ischiensis_contig8.19635.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=99bp
METDAGPGSRTISTASTPNARPARRQARISGLGRLLMAVLSVGVWYALTA
LYSVYNKALLQLFPFPMTLVTAEFGVGVMVVLPGWVLGLVRPPQLIMKQ
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mRNA from alignment at S-ischiensis_contig8:2703601..2704324+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19635.1 ID=mRNA_S-ischiensis_contig8.19635.1|Name=mRNA_S-ischiensis_contig8.19635.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=724bp|location=Sequence derived from alignment at S-ischiensis_contig8:2703601..2704324+ (Schizocladia ischiensis KU_0333)
CCTGAGTGCCAGCCCCGAGGGCTTGGGGAAGATGGAGACCGACGCTGGCC CCGGAAGTCGCACCATTAGCACCGCCTCGACCCCTAATGCACGGCCGGCT CGGAGACAGGCCCGAATATCGGGGTTAGGGCGATTGTTGATGGCGGTTTT GTCAGTGGGTGTCTGGTACGCGCTCACGGCGCTCTACAGCGTGTACAACA AGGCACTGCTGCAGGTCGGTCGCCACGTTGTCCAGGCTGAAGCTGAACTT GTCTTCCGTGTCTGTCGGCCCCTCAGCTGCAAGGATACCTTCGCTTGCAC CCCTGGCTAAGCGGCCAAAACAGGTCAACCCGCAAAACCGTTTCTGGGGG AGGTGGAGGTTCTCCGTTTCTGCGTCGTCCGCCTGGTTGACCCGGGAGCC ACCACGCCGACATTGGCTGCGTATCTTGCCTTTCTTGCCTTTTGGTTCAC TCAGGCTGGTCTAACCCCGGGCTGGCCCCCTGACTGTAGCCTGACCCGCC CGGGTTCCCTGCTCCCCCGTACTACTGAAGTATTTGGTGGGGTAGCTGGT TTGCAATAACCGAAACATCGGAGCCCGCCCGCCCGATTTGCCCCCGCCCC CCCTGCACAGCTTTTCCCTTTCCCTATGACACTGGTCACGGCCGAGTTTG GGGTGGGAGTCATGGTGGTGCTCCCCGGCTGGGTGCTGGGCTTGGTGAGG CCGCCGCAGCTCATCATGAAACAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2703601..2704324+

>mRNA_S-ischiensis_contig8.19635.1 ID=mRNA_S-ischiensis_contig8.19635.1|Name=mRNA_S-ischiensis_contig8.19635.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=594bp|location=Sequence derived from alignment at S-ischiensis_contig8:2703601..2704324+ (Schizocladia ischiensis KU_0333)
ATGGAGACCGACGCTGGCCCCGGAAGTCGCACCATTAGCACCGCCTCGAC
CCCTAATGCACGGCCGGCTCGGAGACAGGCCCGAATATCGGGGTTAGGGC
GATTGTTGATGGCGGTTTTGTCAGTGGGTGTCTGGTACGCGCTCACGGCG
CTCTACAGCGTGTACAACAAGGCACTGCTGCAGATGGAGACCGACGCTGG
CCCCGGAAGTCGCACCATTAGCACCGCCTCGACCCCTAATGCACGGCCGG
CTCGGAGACAGGCCCGAATATCGGGGTTAGGGCGATTGTTGATGGCGGTT
TTGTCAGTGGGTGTCTGGTACGCGCTCACGGCGCTCTACAGCGTGTACAA
CAAGGCACTGCTGCAGCTTTTCCCTTTCCCTATGACACTGGTCACGGCCG
AGTTTGGGGTGGGAGTCATGGTGGTGCTCCCCGGCTGGGTGCTGGGCTTG
GTGAGGCCGCCGCAGCTCATCATGAAACAGCTTTTCCCTTTCCCTATGAC
ACTGGTCACGGCCGAGTTTGGGGTGGGAGTCATGGTGGTGCTCCCCGGCT
GGGTGCTGGGCTTGGTGAGGCCGCCGCAGCTCATCATGAAACAG
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