mRNA_S-ischiensis_contig8.19618.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19618.1
Unique NamemRNA_S-ischiensis_contig8.19618.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2568782..2572244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1099
Cds size702
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19618.1prot_S-ischiensis_contig8.19618.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2568782..2571847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.3845625-CDS-S-ischiensis_contig8:2568781..25691021622817261.3845625-CDS-S-ischiensis_contig8:2568781..2569102Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2568782..2569102 -
1695740977.7814777-CDS-S-ischiensis_contig8:2568781..25691021695740977.7814777-CDS-S-ischiensis_contig8:2568781..2569102Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2568782..2569102 -
1622817261.3993561-CDS-S-ischiensis_contig8:2569822..25700481622817261.3993561-CDS-S-ischiensis_contig8:2569822..2570048Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2569823..2570048 -
1695740977.7954028-CDS-S-ischiensis_contig8:2569822..25700481695740977.7954028-CDS-S-ischiensis_contig8:2569822..2570048Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2569823..2570048 -
1622817261.411221-CDS-S-ischiensis_contig8:2571692..25718471622817261.411221-CDS-S-ischiensis_contig8:2571692..2571847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2571693..2571847 -
1695740977.8068984-CDS-S-ischiensis_contig8:2571692..25718471695740977.8068984-CDS-S-ischiensis_contig8:2571692..2571847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2571693..2571847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.4222229-UTR-S-ischiensis_contig8:2571847..25722441622817261.4222229-UTR-S-ischiensis_contig8:2571847..2572244Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2571848..2572244 -
1695740977.8157744-UTR-S-ischiensis_contig8:2571847..25722441695740977.8157744-UTR-S-ischiensis_contig8:2571847..2572244Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2571848..2572244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19618.1

>prot_S-ischiensis_contig8.19618.1 ID=prot_S-ischiensis_contig8.19618.1|Name=mRNA_S-ischiensis_contig8.19618.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=234bp
MGGFSKSRRNRAPSNGPVEDGGHQPNKPAPARDNTKGKRGRKSKASKPED
SRSSASSKEAFLSRGSSKERFVSRGSSTERRVVSEEAGNGGGDAGGLEGG
GDAAAGAAAGRWRGLLPSFSARDLAYQVAGAVTSRVSGGGGEAASSPPSP
PALSHEGSGVGDGSQGLATKPAAAAASSSPSSSRGGGGSGGFFSFSLFGG
GSTGGGSAGDPLGSSSKGAGATAAAAAGSGVGAA
back to top

mRNA from alignment at S-ischiensis_contig8:2568782..2572244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19618.1 ID=mRNA_S-ischiensis_contig8.19618.1|Name=mRNA_S-ischiensis_contig8.19618.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3463bp|location=Sequence derived from alignment at S-ischiensis_contig8:2568782..2572244- (Schizocladia ischiensis KU_0333)
GCACCCTCTTATGGAAGGAATTCATGCAGGACGCAGGGTATCGCGGTGGT
TTAAGAGCAGTATACGGATTGCTGGAGACGTCTCTTGTCGTCCACTGTGA
CTGGGCACGTCTCTTTCTCGACTCCCCTCTCATCCGTCTAGGCGGTGTTG
GTGTCGCGTAGGCGAAAACAGGACCAGAGACAGGGTTACGTCGCAGCCGG
CGACTTCGCGCGCTCAGAGCGCGGTTTTTGGTTTCGCTTCCACGGGGTTG
GTTTAGTTGGGCCAGACCACAGGAGGGCAGCTTACGGCAGGTGTGTCTCG
CACCCGCCGCGCGGTCGTCGTCTCCGCGGTCCGGAACCTGTAGTGTGCCG
GTGAGTGCAGTGGGTGGGGGCCTGGAAAGCCGCCCATCACAGACCAGATG
GGAGGTTTCAGCAAGTCACGCCGCAATCGGGCCCCTAGTAACGGGCCAGT
GGAGGATGGAGGGCACCAGCCGAACAAGCCCGCGCCGGCTCGAGACAACA
CAAAGGGGAAAAGGGGGCGGAAATCCAAGGCTAGCAAGCCAGAAGACTCC
AGGTATGCATGAATTTGCTGTGCGCATGGATTTACTTCGTGAAGGCCCGG
GCGCGGGTCTTTCTTTCTTGGCCCCGGGCGGGTTCTCTCACGTGGCATTC
CACGTAGAAACCCTAATTTTTTGGGGGACACCGGTTCACTAAGCTAGAGG
GGTTGGAAAACATACGACATAGGAATTAAGTAAGGACATCGTGAGTCTTA
ATTCGCGAATCTTAGTCCGCTGATGGTTGACACCGTTTCAGTCAGCGTCC
AACCGTAGGCGTTGGGGGAGTGGAACCCGCGCGCCAGGCTTGGGAGACAG
CGTGTTCTTTGAAGGGGTTATGGAAAGTACGTACCGGAGATTTTGATGAA
AAAAGTACTCACCGTAGCGGACAAACGGCCCTAAATGTTTGAGGGCTTCG
CATCTGTATACCTGAACACCCACGCAGTAATGTGTGAGGAGTTTGGGGAA
AACGCCCAAGGCGGTCCTCCTCGAGCCCACGGACAACAGACACTGCGCGT
TTGGGCGATTCACGCCGTCACCCATGTCGGCAGGTTGCATGTTTTCCCTT
TATAGTACCTCGAAGTACGTACAGTAGTAGATTGCGCGCTCAACGGCAAG
TGCAGCAGTATACTGGGCCGATGGTCGGTGGCGTGCACAGGACGGGGTGT
CCCCTGTCCGACGCGAGTGCACGCACGCAGTCAAAAGCGGGTTGGCAACC
TTTGTGTCGTTTTAGCCTGTTCGAAACGGTGGTGCGACTTGTGAGTAGAG
TTGTGAAACCGAAGCCGTTTTAGCCAACCAGTTCAGGCATCAGGTTCGAC
CGAAACAAGACGACCGAGGGTGTGCCCTTTTCTTTTCTTACCGAGGGGCC
GTTATTGTTTCTTCTCTTGTATCTTTTTTTCTTCTCCTCCTGTGCCAGTT
AGCTGTCGCACAGTGACGATACCGTTGTTGCCAATTCCTGGGGACACTGT
TGGAGAAAAACCGGGAAAAGCCTGCTTAGAAAGTTAACTGGTTCGAGTAT
GCAAAAACTACTTCCAACTACAGTACTGTAGTAACAACCGATCGACCCGA
ACCCGGCCAAATCAGTTACCCCGTTAAACCGGTAACGGCTGCCAGTGCAC
AACTGTACTTGTGAGACTTCAGCAGCGCAGGAGGCTGGACGGCCCCATCG
GGCGGGTTTTCCCCCACCTTCCTTGCACCCCCCCCGGGGGGGTGACCACC
GCCACCTCTGGTTGACTGTAACTGCCTCTCCGTGCCCTCCTCTCTGTCCT
CGTAGCCAACTCAGTTGCTATACTACAATTGTCGTATATATCGAGGCCAT
GCTCTGCTATATGGGCATTCCGTTGCACACCCGTATCCTAGGACGGTATA
TGTATGCGTGTACTCGCGTTGTGCTTGCCGTAGTCCCGAGACCATTGACC
ACTACAGCGCTGTTGACCACGGAGCATCCTATATATATATGAAGTATGTA
TGTATACCCGTATGTACTCACTTGACTTATCTTCCGATGGGTTGTAGCTG
TGCCTGCATACTTTGTAGTCGACGGCGGCGCAAAGTAGAGCAAATTTCGG
AGCTCGTGCCCTCCCCCGTCCAGACCATTGACCCCTTCCCCCCTGGCGCG
CATGCGCGCGCGCGCGCGCGCGCACACACACACACACACACAGCAGGAGC
AGCGCCTCCAGCAAGGAAGCGTTCCTCAGCCGGGGCTCCAGCAAGGAGCG
CTTCGTCAGTAGGGGATCCAGCACGGAGCGCCGGGTCGTGTCCGAGGAGG
CGGGCAACGGTGGCGGGGATGCCGGTGGCCTCGAGGGCGGCGGCGATGCA
GCTGCGGGCGCGGCGGCGGGGCGTTGGCGGGGGCTGCTGCCGTCGTTCTC
CGCCAGGGACCTTGCCTACCAGGTGTGGGAGGACTGCTGGAAGGCGTGTT
GTGTGTTGCTTGTGTGTCTGTCTGTCTGTCTGTCTGTGTGTCTATGTCTT
TATGTATGTATGTCTGTCTGCCTGCTGTGTGTCTGTTGTCTGTCTGTCTG
TCTGTCTGCCGACCTGCCTGCCTGCCCGTCGGCCTGCCTGCCTGTCTGTA
TGTATGTGTGTATGCATGTCTTGTCTGTCTGTCGGCCTGCCTGCCTGACT
GTCGGCTATGGTCCAACTGGTGCGAGTATGTGGGAATCCTCGCACCGTGC
TTGCCGTGCTGCACTGTCGTCTCGACACCATTGGCCACGTACGTGGTGCT
TGGAAGGCATGAGAGTGTGAGCGCGTCCCTCCGCCGCCGCCGCCGCCAGC
GCCGCAGACAGCTGGCGTCTCACATGTCGGGGCGCTGTGTTCTGCAGTCC
GTACATACGTAGCTCTGGAAGAGGCCCAACGCATTGATGGGATGTGGCAC
TTGCCAGGCACTTGCACGCCAGTATATATATGTACTCACTGGCTTGTCTT
GCGACATGAGCGTGCGTGCAATGCCGACAGCCCTAAGTCAAAACTTCGGG
TTTGCCCTCCCCCAGTACTCAGGACACTCTCTACCAGAAGTGACCTACTG
TAGCGATTTTCGTGTCCCCTGTTGCCGTCCCGAGCTGAAACGCCCCCGCT
CCCATTCCCCCCGCCGCCGCCACCGCCACGCCTCCCTCATAGGTCGCCGG
AGCTGTGACATCCAGGGTCTCGGGTGGGGGCGGGGAGGCTGCCTCCTCTC
CGCCTTCCCCGCCCGCGCTCAGCCATGAAGGCAGCGGTGTTGGGGATGGC
AGCCAAGGCTTGGCGACAAAGCCCGCCGCCGCCGCTGCCTCTTCCTCGCC
CTCATCCTCCCGCGGCGGCGGTGGCAGCGGCGGATTCTTCAGCTTCAGCC
TCTTTGGAGGTGGCAGCACCGGCGGTGGCAGCGCTGGCGACCCGCTGGGG
TCATCATCCAAAGGTGCCGGGGCGACAGCGGCGGCGGCGGCTGGGTCAGG
CGTGGGAGCGGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:2568782..2572244-

>mRNA_S-ischiensis_contig8.19618.1 ID=mRNA_S-ischiensis_contig8.19618.1|Name=mRNA_S-ischiensis_contig8.19618.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1404bp|location=Sequence derived from alignment at S-ischiensis_contig8:2568782..2572244- (Schizocladia ischiensis KU_0333)
ATGGGAGGTTTCAGCAAGTCACGCCGCAATCGGGCCCCTAGTAACGGGCC
AGTGGAGGATGGAGGGCACCAGCCGAACAAGCCCGCGCCGGCTCGAGACA
ACACAAAGGGGAAAAGGGGGCGGAAATCCAAGGCTAGCAAGCCAGAAGAC
TCCAGATGGGAGGTTTCAGCAAGTCACGCCGCAATCGGGCCCCTAGTAAC
GGGCCAGTGGAGGATGGAGGGCACCAGCCGAACAAGCCCGCGCCGGCTCG
AGACAACACAAAGGGGAAAAGGGGGCGGAAATCCAAGGCTAGCAAGCCAG
AAGACTCCAGGAGCAGCGCCTCCAGCAAGGAAGCGTTCCTCAGCCGGGGC
TCCAGCAAGGAGCGCTTCGTCAGTAGGGGATCCAGCACGGAGCGCCGGGT
CGTGTCCGAGGAGGCGGGCAACGGTGGCGGGGATGCCGGTGGCCTCGAGG
GCGGCGGCGATGCAGCTGCGGGCGCGGCGGCGGGGCGTTGGCGGGGGCTG
CTGCCGTCGTTCTCCGCCAGGGACCTTGCCTACCAGGAGCAGCGCCTCCA
GCAAGGAAGCGTTCCTCAGCCGGGGCTCCAGCAAGGAGCGCTTCGTCAGT
AGGGGATCCAGCACGGAGCGCCGGGTCGTGTCCGAGGAGGCGGGCAACGG
TGGCGGGGATGCCGGTGGCCTCGAGGGCGGCGGCGATGCAGCTGCGGGCG
CGGCGGCGGGGCGTTGGCGGGGGCTGCTGCCGTCGTTCTCCGCCAGGGAC
CTTGCCTACCAGGTCGCCGGAGCTGTGACATCCAGGGTCTCGGGTGGGGG
CGGGGAGGCTGCCTCCTCTCCGCCTTCCCCGCCCGCGCTCAGCCATGAAG
GCAGCGGTGTTGGGGATGGCAGCCAAGGCTTGGCGACAAAGCCCGCCGCC
GCCGCTGCCTCTTCCTCGCCCTCATCCTCCCGCGGCGGCGGTGGCAGCGG
CGGATTCTTCAGCTTCAGCCTCTTTGGAGGTGGCAGCACCGGCGGTGGCA
GCGCTGGCGACCCGCTGGGGTCATCATCCAAAGGTGCCGGGGCGACAGCG
GCGGCGGCGGCTGGGTCAGGCGTGGGAGCGGCGGTCGCCGGAGCTGTGAC
ATCCAGGGTCTCGGGTGGGGGCGGGGAGGCTGCCTCCTCTCCGCCTTCCC
CGCCCGCGCTCAGCCATGAAGGCAGCGGTGTTGGGGATGGCAGCCAAGGC
TTGGCGACAAAGCCCGCCGCCGCCGCTGCCTCTTCCTCGCCCTCATCCTC
CCGCGGCGGCGGTGGCAGCGGCGGATTCTTCAGCTTCAGCCTCTTTGGAG
GTGGCAGCACCGGCGGTGGCAGCGCTGGCGACCCGCTGGGGTCATCATCC
AAAGGTGCCGGGGCGACAGCGGCGGCGGCGGCTGGGTCAGGCGTGGGAGC
GGCG
back to top