mRNA_S-ischiensis_contig8.19612.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19612.1
Unique NamemRNA_S-ischiensis_contig8.19612.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A836CLC3_9STRA (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC3_9STRA)

HSP 1 Score: 293 bits (750), Expect = 3.930e-92
Identity = 158/308 (51.30%), Postives = 194/308 (62.99%), Query Frame = 3
Query:  171 MSYAVNDQRPAGDGYWGNLTASQEVALEELREAVVAADLDLRLVRGDWGRGGSGANTPTEGSGAPGRGAAVAASSSTAPDAVEPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTARTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPARLPPEYGGTAPPL 1094
            ++Y++ D R   +G+ G L+  QE AL EL   V + +LDL LVRG                                    EP  LCLLR+LRANGF    AL QL EN ++R  + V  L+ + A +VLGCDPE +NR++PHW  GEDR+GRPVL KQY GF++ EL  LTT+E MV SHVWEQE  L L+R ++   G IVD+VVVIID GGM +RQV+ DF+ ++K VA VDQ M+PELLG+M IINTP LF YVW MF PLLD+RTR KI + S P  WQP LLEL     LPPEYGGT  PL
Sbjct:   20 LAYSLEDPRHVLEGFHGQLSEPQEGALRELYGLVESLNLDLTLVRGQ---------------------------------PAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 294          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 7.970e-74
Identity = 146/330 (44.24%), Postives = 196/330 (59.39%), Query Frame = 3
Query:  171 MSYAVNDQRPAGDGYWGNLTASQEVALEELREAVVAADLDLRLVRGDWGRGGSGANTPTEGSGAPGRGAAVAASSSTAPDAVEPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTA------------RTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPARLPPEYGGTAPPLVQTPSLSAYL 1124
            + Y  +D R + +GY G+LT  +E AL EL+ A  A  LDL LVRG +G+G                             AVEP  LCLLR+LR N F V  AL QL +   +R +    RL+ ++  ++L C+ E+ N FYP W +G D+LGRP+LA +Y    LWE+TKLTTVE+M + H  EQE +L +LR +T             R G IVDT VV+ID GG+TLR V+K F+R+ K  A +DQ +FPE+LG+  I+NTP+LF YVW+MF+PL+D RTR+KI++ S P  W   L E+ DP +L PEYGGT       PSL+  L
Sbjct:    2 LRYHPDDPRSSLEGYEGSLTQDEEAALAELQSA--AQGLDLGLVRGAYGQG-----------------------FERGDHAVEPLRLCLLRFLRGNAFIVNKALSQLEDCVEYRRQHPTDRLLTKSPHDILACNVEDFNSFYPRWLMGFDKLGRPILATRYGSLRLWEMTKLTTVERMTELHAREQELLLRVLRRRTLEXXXXXXXAAAERAGHIVDTAVVVIDTGGLTLRHVTKAFVRLFKLRAHMDQLLFPEMLGKCFIVNTPSLFSYVWSMFSPLVDERTRSKISIISKPQDWTKALQEIADPDQLSPEYGGTGRRKEDLPSLADAL 306          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A7S1UE19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE19_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.550e-52
Identity = 109/295 (36.95%), Postives = 158/295 (53.56%), Query Frame = 3
Query:  210 GYWGNLTASQEVALEELREAVVAADLDLRLVRGDWGRGGSGANTPTEGSGAPGRGAAVAASSSTAPDAVEPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTARTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPARLPPEYGGTAPPL 1094
            GY G L   QE  L + RE V A  L   L                          A  A    +PD         LR+LRA  + V+ A+ ++  +  WR +     ++     ++LGCDPE VNR++PHW LG DR  RP+L KQY  F +W L + TT+E+++  HVW Q++ + +++ K  R G  ++T  +++DV GM L QV++DFLR+++ +A +DQ  FPE LG + I+N P +F  VW    P LD  T +KI + S    W P L+EL +P  LP +YGGT PPL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLAAAL--------------------------AQLAEFDESPD------YAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A6U4K456_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K456_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.730e-50
Identity = 109/295 (36.95%), Postives = 158/295 (53.56%), Query Frame = 3
Query:  210 GYWGNLTASQEVALEELREAVVAADLDLRLVRGDWGRGGSGANTPTEGSGAPGRGAAVAASSSTAPDAVEPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTARTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPARLPPEYGGTAPPL 1094
            GY G L   QE  L + RE V A  L   L                          A  A    +PD         LR+LRA  + V+ A+ ++  +  WR +     ++     ++LGCDPE VNR++PHW LG DR  RP+L KQY  F +W L + TT+E+++  HVW Q++ + +++ K  R G  ++T  +++DV GM L QV++DFLR+++ +A +DQ  FPE LG + I+N P +F  VW    P LD  T +KI + S    W P L+EL +P  LP +YGGT PPL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLAAAL--------------------------AQLAEFDESPD------YAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A6U4K475_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K475_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.800e-50
Identity = 109/295 (36.95%), Postives = 158/295 (53.56%), Query Frame = 3
Query:  210 GYWGNLTASQEVALEELREAVVAADLDLRLVRGDWGRGGSGANTPTEGSGAPGRGAAVAASSSTAPDAVEPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTARTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPARLPPEYGGTAPPL 1094
            GY G L   QE  L + RE V A  L   L                          A  A    +PD         LR+LRA  + V+ A+ ++  +  WR +     ++     ++LGCDPE VNR++PHW LG DR  RP+L KQY  F +W L + TT+E+++  HVW Q++ + +++ K  R G  ++T  +++DV GM L QV++DFLR+++ +A +DQ  FPE LG + I+N P +F  VW    P LD  T +KI + S    W P L+EL +P  LP +YGGT PPL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLAAAL--------------------------AQLAEFDESPD------YAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A6H5JC33_9PHAE (CRAL_TRIO_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC33_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.110e-45
Identity = 100/233 (42.92%), Postives = 133/233 (57.08%), Query Frame = 3
Query:  171 MSYAVNDQRPAGDGYWGNLTASQEVALEELREAVVAADLDLRLVRGDWGRGGSGANTPTEGSGAPGRGAAVAASSSTAPDAVEPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTA-----------RTGVIVDTVVVIIDVGGMTLRQVS 836
            + Y  +D R + +GY G+LT  +E AL ELR A  A  LDL +VRG +G+G  G +                        AVEP  LCLLR+LR N F V  AL QL +   +R +    RL++++  ++L C+ E+ N FYP W +G D+LGRP+LA QY    LWE+TKLTTVE+M + H  EQE +L +LR +T            R G IVDT VV+ID GG+TLR VS
Sbjct:    2 LRYHPDDPRSSLEGYEGSLTQDEEAALAELRSA--AQGLDLGMVRGAYGQGFEGGD-----------------------HAVEPLRLCLLRFLRGNAFDVNKALSQLEDCVEYRRQHPTDRLLSKSPHDILACNLEDFNSFYPRWLMGFDKLGRPILATQYGSLRLWEMTKLTTVERMTELHAREQELLLRVLRRRTLEGGGGEGAAAERAGHIVDTAVVVIDTGGLTLRHVS 209          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A7S0GY37_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GY37_9EUKA)

HSP 1 Score: 170 bits (431), Expect = 1.180e-44
Identity = 83/223 (37.22%), Postives = 134/223 (60.09%), Query Frame = 3
Query:  417 EPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTARTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPARLPPEYGGTA 1085
            E + L LLR+LRA  F V+ A + L+++ +WR +K+V  L  +T REVLGCDP+ ++   P W  G D+ GRPV+ K +  F +WE+TK T++EK++D H+W+ E  + L R  + +   IV+TV V++D     L   +K+  + L  +++VD   FPE +GR++++N P L    W +    LD +T+ K+ +  GP  ++P L +    + L  EYGG A
Sbjct:  101 ETQDLILLRFLRARNFEVKKAYKLLSDDIAWRKDKDVKSLKKKTEREVLGCDPKLMHTHLPVWHQGCDKQGRPVIYKIFGNFQIWEVTKHTSLEKLIDHHLWQMESYMDLTRENSKKFRHIVETVTVVVDAKDWRLSLFTKEATKFLYRISKVDSDHFPERMGRLIVVNAPYLLSVAWKVIRGWLDPKTQKKVQIVRGPNEYEPILKDWISESSLCDEYGGKA 323          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A6H5KCF8_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF8_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.390e-42
Identity = 112/309 (36.25%), Postives = 159/309 (51.46%), Query Frame = 3
Query:  210 GYWGNLTASQEVALEELREAVVAADLDLRLVRGDWGRGGSGANTPTEGSGAPGRGAAVAASSSTAPDAVEPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEV-----NRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTARTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPARLPPEYGGTAPPLVQTPSLSAY 1121
            GY   L+ S E AL  LR+ +    +++  + GD G                     +A + S  P   E E L LLR+LR N + V+    QL  + SWR E  V     R   EV GC  +E         YPH+ +G DR GRP+L ++Y  F   +L + TT+  ++  H WEQE    LLR  +ARTG +V+T  VI+D  GM++ QV++DFL +L+ ++ +D+T +P   G + +INTP LFG  W      L   T+A + +      W+  L E  DPA LP +YGGTAP L  TP L A+
Sbjct:   92 GYARRLSPSHEAALGGLRQWLTRESVNISPLLGDVG---------------------LALAVSCPP---EEEDLVLLRFLRHNAWDVELTRAQLEASLSWRIETGVASNARREPWEVSGCASKEAFEELCRTHYPHYTIGTDRAGRPILVQKYGNFDTSKLQEFTTLPGLLRYHAWEQENNADLLRRASARTGYLVETYAVIMDFKGMSMGQVNRDFLWLLRKLSEMDRTHYPGRGGVIFVINTPPLFGLAWQGIRGFLT--TQATVHIFGVEKEWKAALAEAVDPAVLPLDYGGTAPHLADTPLLPAF 374          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A7S0LSP1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSP1_9EUKA)

HSP 1 Score: 162 bits (410), Expect = 1.200e-41
Identity = 92/238 (38.66%), Postives = 136/238 (57.14%), Query Frame = 3
Query:  423 ESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLT--TVEKMVDSHVWEQERVLGLLRGKTARTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPAR-LPPEYGGTAPPLVQTPSLSAYLE 1127
            ESL LLRYLRAN F V+   + +  N  WR  + +  L+ +   ++LGC   ++  F+PHW  G D+ GRP+L KQ   F + E+ KL     E M+  H+WEQE    L   ++ +T  I++TV V++DV G+TL  +S DF  ++  + ++DQ M+PE LG++LIIN P++F  ++ +  PLLD  T AKI +     T    LL+       LP  Y GT PPL  T ++  Y E
Sbjct:   81 ESLLLLRYLRANNFNVKKTKKHIVTNIEWRKSQNIPELMKQNPEDILGCKLADLVGFFPHWHSGYDKTGRPLLFKQQGAFDIKEIKKLCGGNFESMLRYHIWEQEVASRLCYEQSLKTRTIIETVTVVLDVKGLTLSSISSDFRAMMNGIIKMDQDMYPETLGKILIINAPSVFPMIFGLLKPLLDPITAAKINIKG---TDHKALLDSSIGLEFLPENYCGTLPPL--TSAVHPYAE 313          
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Match: A0A7S3HMX7_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMX7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 5.650e-41
Identity = 80/235 (34.04%), Postives = 135/235 (57.45%), Query Frame = 3
Query:  417 EPESLCLLRYLRANGFAVQGALQQLTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPVLAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTARTGVIVDTVVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALFGYVWAMFTPLLDARTRAKITV-ASGPATWQPTLLELCDPARLPPEYGGTAPPLVQTPSLSA 1118
            E   L +LR+LRA  ++V+ AL  + E+ +WR +     L   +A+EVL CD E++  ++P W  G D+  RPV  +++  F +W + KLTT+E+++  H WE E+ L  +   + ++G  ++T V++ID  G  L+  + D    +K +A  D   +PE LG +++IN P++  + W +    LD+ T+ KI + +S P  WQP L    D  ++P +YGGTAP L    ++ A
Sbjct:   39 EETFLKILRFLRARKYSVKNALAMIREDINWRAQNNRLDLPKESAQEVLNCDIEKLYDYFPVWFQGYDKQMRPVSYRKFGKFEIWNVLKLTTMERLIRFHAWETEQALRSMYSLSRKSGYNIETFVIVIDASGWNLKLATSDAFAFIKGMAVTDSDHYPERLGTLVLINAPSMLSFAWRVIQGFLDSVTKEKIKILSSDPQEWQPVLRHYIDNDQIPRQYGGTAPDLTSEEAIGA 273          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLC3_9STRA3.930e-9251.30CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
D8LG14_ECTSI7.970e-7444.24CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
A0A7S1UE19_9STRA2.550e-5236.95Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6U4K456_9STRA1.730e-5036.95Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4K475_9STRA2.800e-5036.95Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6H5JC33_9PHAE1.110e-4542.92CRAL_TRIO_N domain-containing protein n=1 Tax=Ecto... [more]
A0A7S0GY37_9EUKA1.180e-4437.22Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6H5KCF8_9PHAE2.390e-4236.25CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S0LSP1_9EUKA1.200e-4138.66Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S3HMX7_9STRA5.650e-4134.04Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2535681..2538049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.0
Seed ortholog evalue7e-68
Seed eggNOG ortholog2880.D8LG14
KEGG koko:K19996
EggNOG free text desc.cholestenol delta-isomerase activity
EggNOG OGsKOG1471@1,KOG1471@2759,KOG4826@1,KOG4826@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size1667
Cds size1479
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817292.2109547-UTR-S-ischiensis_contig8:2535680..25357181622817292.2109547-UTR-S-ischiensis_contig8:2535680..2535718Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2535681..2535718 +
1695741001.3919477-UTR-S-ischiensis_contig8:2535680..25357181695741001.3919477-UTR-S-ischiensis_contig8:2535680..2535718Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2535681..2535718 +
1622817292.2871394-UTR-S-ischiensis_contig8:2537899..25380491622817292.2871394-UTR-S-ischiensis_contig8:2537899..2538049Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2537900..2538049 +
1695741001.4526467-UTR-S-ischiensis_contig8:2537899..25380491695741001.4526467-UTR-S-ischiensis_contig8:2537899..2538049Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2537900..2538049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817292.2226374-CDS-S-ischiensis_contig8:2535718..25359221622817292.2226374-CDS-S-ischiensis_contig8:2535718..2535922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2535719..2535922 +
1695741001.4033368-CDS-S-ischiensis_contig8:2535718..25359221695741001.4033368-CDS-S-ischiensis_contig8:2535718..2535922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2535719..2535922 +
1622817292.2341814-CDS-S-ischiensis_contig8:2536055..25363371622817292.2341814-CDS-S-ischiensis_contig8:2536055..2536337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2536056..2536337 +
1695741001.4135458-CDS-S-ischiensis_contig8:2536055..25363371695741001.4135458-CDS-S-ischiensis_contig8:2536055..2536337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2536056..2536337 +
1622817292.2489119-CDS-S-ischiensis_contig8:2536574..25368801622817292.2489119-CDS-S-ischiensis_contig8:2536574..2536880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2536575..2536880 +
1695741001.42376-CDS-S-ischiensis_contig8:2536574..25368801695741001.42376-CDS-S-ischiensis_contig8:2536574..2536880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2536575..2536880 +
1622817292.2629812-CDS-S-ischiensis_contig8:2537182..25377251622817292.2629812-CDS-S-ischiensis_contig8:2537182..2537725Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2537183..2537725 +
1695741001.43395-CDS-S-ischiensis_contig8:2537182..25377251695741001.43395-CDS-S-ischiensis_contig8:2537182..2537725Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2537183..2537725 +
1622817292.275269-CDS-S-ischiensis_contig8:2537755..25378991622817292.275269-CDS-S-ischiensis_contig8:2537755..2537899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2537756..2537899 +
1695741001.4446228-CDS-S-ischiensis_contig8:2537755..25378991695741001.4446228-CDS-S-ischiensis_contig8:2537755..2537899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2537756..2537899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19612.1prot_S-ischiensis_contig8.19612.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2535719..2537899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19612.1

>prot_S-ischiensis_contig8.19612.1 ID=prot_S-ischiensis_contig8.19612.1|Name=mRNA_S-ischiensis_contig8.19612.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=493bp
MPAWDVPSPITRGMAMPGQHSRESTELEWPPAAAQGGAQAKVPPMSYAVN
DQRPAGDGYWGNLTASQEVALEELREAVVAADLDLRLVRGDWGRGGSGAN
TPTEGSGAPGRGAAVAASSSTAPDAVEPESLCLLRYLRANGFAVQGALQQ
LTENASWRTEKEVGRLVARTAREVLGCDPEEVNRFYPHWCLGEDRLGRPV
LAKQYKGFLLWELTKLTTVEKMVDSHVWEQERVLGLLRGKTARTGVIVDT
VVVIIDVGGMTLRQVSKDFLRVLKAVARVDQTMFPELLGRMLIINTPALF
GYVWAMFTPLLDARTRAKITVASGPATWQPTLLELCDPARLPPEYGGTAP
PLVQTPSLSAYLEQKQPPLNRDPDAAAADGGSSDLKAALGDALSAPPGTE
QLRRAAAAAAVVAPEEEEKEEEEEPRLYSRLTRPRSWSSQCRPPPPASGS
GWPGGAGAGPRSGPGPVAAAIARHCRTWTRRNSWTPWQSWRI*
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mRNA from alignment at S-ischiensis_contig8:2535681..2538049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19612.1 ID=mRNA_S-ischiensis_contig8.19612.1|Name=mRNA_S-ischiensis_contig8.19612.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2369bp|location=Sequence derived from alignment at S-ischiensis_contig8:2535681..2538049+ (Schizocladia ischiensis KU_0333)
GTTCGAGCCCGCAGGGGGTGCATGCCCACGTGACTCGAATGCCCGCCTGG GACGTTCCCTCCCCAATCACGCGAGGGATGGCCATGCCAGGACAGCACAG CAGGGAGAGCACCGAGCTGGAATGGCCGCCCGCTGCGGCTCAGGGAGGAG CCCAGGCCAAAGTCCCCCCCATGTCGTACGCCGTTAACGACCAACGCCCC GCAGGCGATGGGTACTGGGGGAATCTGACCGCCTCTCAGGAGGTAAGAAG GGGGCGTGGTGAATATGCTGTAGGGCTTCCTCCGGCCGGAGCTCGACAGC GGGTACGGTAGGACTCTTGAGAGGGCAATAGCCTCACTGCCCTCCCCAAC TGCCGGCTCGTTTGCGCCTTCCCAGGTGGCATTGGAGGAACTCAGGGAGG CAGTCGTGGCGGCAGACCTGGACTTGCGTTTAGTACGCGGAGACTGGGGC AGAGGGGGCTCGGGCGCGAACACACCAACCGAGGGAAGCGGGGCGCCAGG CAGAGGCGCCGCCGTCGCCGCCTCCTCCTCCACCGCCCCAGATGCCGTCG AGCCCGAGAGCCTGTGCCTGCTGCGCTATCTCCGCGCGAATGGCTTCGCG GTCCAGGGGGCCCTGCAGCAGCTGACGGAGAACGCCTCCTGGCGGACGGA GAAGGAGGTGGGCCTAACCATGGTACAAAATTGCGATCGCTGTTTTTGGT GCCCGGGCCGCCCTATGCAGGACGCATCGGATGACCGTGAAATTTTGAAA CATGAAAGAGCTCGATGAGCACGTTCATTTGCGCTAATTATAGTTTTCGT GTCACAACATCACATGGACCGAGCAACAGGTCAATCGATATTCGACGAAA CTATTTGGGGAAAAAAACAGTTGCACTTTCGTACCATGGCTAAGGTGGGC CGGCTCGTGGCGCGGACGGCGCGGGAGGTCCTGGGCTGCGACCCGGAGGA GGTGAACCGCTTCTACCCGCACTGGTGCCTGGGCGAGGACCGGCTGGGCC GGCCCGTCCTGGCCAAGCAGTACAAGGGGTTCCTGCTCTGGGAGCTGACC AAGCTCACCACGGTGGAGAAAATGGTGGACTCGCACGTGTGGGAGCAGGA GCGCGTGCTGGGCTTGCTGCGGGGCAAGACCGCCCGGACGGGCGTAATCG TCGACACCGTGGTGGTGATCATCGACGTGGGGGGCATGACCTTGAGACAG GTGGGGTGGGGCGCAAGGAGCGCGGTGGTGAGACGGGGAAGTGGGCGCGC CCCCCCTGGGCAGCCCGAACCAATATTTACCGCCTTCTGAGAAGAAGGGG CGGCGGGCAGGCTCGCACTGATGGCCGAGGATGGGGTGGCGGTCGCTCAC CCAAAGGGGGTCGATGAAAGCGGCAAAGAAAACGTTCTGTACAAGTAGCC GCACGCACCACCATCGCTCTTTGCTTCTCCCCTGAGTGAGAGGCTACACT TTAAACGCGTGCCTGGCCTGCCCGCCCGTGCCGACCCGCCCGTGACAACC AGGTCTCCAAGGACTTCCTGCGCGTCCTCAAGGCCGTGGCCAGGGTCGAC CAGACCATGTTCCCCGAGCTCCTGGGCCGCATGCTCATCATCAACACCCC CGCGCTCTTCGGCTACGTGTGGGCCATGTTCACCCCCTTGCTCGACGCCC GCACCCGCGCTAAGATCACCGTCGCCTCCGGCCCGGCCACCTGGCAGCCC ACCCTCCTCGAGCTGTGCGACCCCGCACGCCTCCCCCCCGAGTACGGCGG CACCGCCCCCCCCCTCGTGCAGACTCCTTCGCTATCCGCGTACCTCGAGC AGAAGCAGCCGCCGCTTAACCGGGACCCCGATGCCGCCGCCGCCGACGGA GGCAGCAGTGACCTCAAAGCGGCCCTTGGCGATGCGTTGTCTGCCCCCCC GGGGACAGAGCAGCTGCGGCGGGCAGCGGCGGCGGCGGCCGTGGTGGCAC CAGAAGAAGAAGAGAAGGAGGAGGAGGAGGAGCCGCGGCTGTATTCTCGC CTCACGCGGCCACGTTCTTGGTCAAGCCAGTGCCGGCCCCCCCCCGCGCG GGGGGGGGCTGGGGCTCCGCCGCTTCCGGCGTCTGGCAGTGGCTGGCCCG GTGGGGCGGGGGCGGGGCCGAGGTCGGGCCCAGGGCCGGTGGCGGCAGCG ATTGCGCGTCACTGTCGGACCTGGACGAGGAGGAATTCCTGGACGCCGTG GCAGAGTTGGAGGATATGAGTGTGGGAGGTGGGGACACCGAGGACGGCAG TGATGATGGCAACAGCAGCGGTGGCGGTGGCGGTGGCGGTGGTGGCGGCA GCAGCAGCAGCGGCGACAGCTGGGCTTCCGGCAACAACAGCAACAAGCGG TGGTGGGGGTTGTGTGTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2535681..2538049+

>mRNA_S-ischiensis_contig8.19612.1 ID=mRNA_S-ischiensis_contig8.19612.1|Name=mRNA_S-ischiensis_contig8.19612.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2958bp|location=Sequence derived from alignment at S-ischiensis_contig8:2535681..2538049+ (Schizocladia ischiensis KU_0333)
ATGCCCGCCTGGGACGTTCCCTCCCCAATCACGCGAGGGATGGCCATGCC
AGGACAGCACAGCAGGGAGAGCACCGAGCTGGAATGGCCGCCCGCTGCGG
CTCAGGGAGGAGCCCAGGCCAAAGTCCCCCCCATGTCGTACGCCGTTAAC
GACCAACGCCCCGCAGGCGATGGGTACTGGGGGAATCTGACCGCCTCTCA
GGAGATGCCCGCCTGGGACGTTCCCTCCCCAATCACGCGAGGGATGGCCA
TGCCAGGACAGCACAGCAGGGAGAGCACCGAGCTGGAATGGCCGCCCGCT
GCGGCTCAGGGAGGAGCCCAGGCCAAAGTCCCCCCCATGTCGTACGCCGT
TAACGACCAACGCCCCGCAGGCGATGGGTACTGGGGGAATCTGACCGCCT
CTCAGGAGGTGGCATTGGAGGAACTCAGGGAGGCAGTCGTGGCGGCAGAC
CTGGACTTGCGTTTAGTACGCGGAGACTGGGGCAGAGGGGGCTCGGGCGC
GAACACACCAACCGAGGGAAGCGGGGCGCCAGGCAGAGGCGCCGCCGTCG
CCGCCTCCTCCTCCACCGCCCCAGATGCCGTCGAGCCCGAGAGCCTGTGC
CTGCTGCGCTATCTCCGCGCGAATGGCTTCGCGGTCCAGGGGGCCCTGCA
GCAGCTGACGGAGAACGCCTCCTGGCGGACGGAGAAGGAGGTGGCATTGG
AGGAACTCAGGGAGGCAGTCGTGGCGGCAGACCTGGACTTGCGTTTAGTA
CGCGGAGACTGGGGCAGAGGGGGCTCGGGCGCGAACACACCAACCGAGGG
AAGCGGGGCGCCAGGCAGAGGCGCCGCCGTCGCCGCCTCCTCCTCCACCG
CCCCAGATGCCGTCGAGCCCGAGAGCCTGTGCCTGCTGCGCTATCTCCGC
GCGAATGGCTTCGCGGTCCAGGGGGCCCTGCAGCAGCTGACGGAGAACGC
CTCCTGGCGGACGGAGAAGGAGGTGGGCCGGCTCGTGGCGCGGACGGCGC
GGGAGGTCCTGGGCTGCGACCCGGAGGAGGTGAACCGCTTCTACCCGCAC
TGGTGCCTGGGCGAGGACCGGCTGGGCCGGCCCGTCCTGGCCAAGCAGTA
CAAGGGGTTCCTGCTCTGGGAGCTGACCAAGCTCACCACGGTGGAGAAAA
TGGTGGACTCGCACGTGTGGGAGCAGGAGCGCGTGCTGGGCTTGCTGCGG
GGCAAGACCGCCCGGACGGGCGTAATCGTCGACACCGTGGTGGTGATCAT
CGACGTGGGGGGCATGACCTTGAGACAGGTGGGCCGGCTCGTGGCGCGGA
CGGCGCGGGAGGTCCTGGGCTGCGACCCGGAGGAGGTGAACCGCTTCTAC
CCGCACTGGTGCCTGGGCGAGGACCGGCTGGGCCGGCCCGTCCTGGCCAA
GCAGTACAAGGGGTTCCTGCTCTGGGAGCTGACCAAGCTCACCACGGTGG
AGAAAATGGTGGACTCGCACGTGTGGGAGCAGGAGCGCGTGCTGGGCTTG
CTGCGGGGCAAGACCGCCCGGACGGGCGTAATCGTCGACACCGTGGTGGT
GATCATCGACGTGGGGGGCATGACCTTGAGACAGGTCTCCAAGGACTTCC
TGCGCGTCCTCAAGGCCGTGGCCAGGGTCGACCAGACCATGTTCCCCGAG
CTCCTGGGCCGCATGCTCATCATCAACACCCCCGCGCTCTTCGGCTACGT
GTGGGCCATGTTCACCCCCTTGCTCGACGCCCGCACCCGCGCTAAGATCA
CCGTCGCCTCCGGCCCGGCCACCTGGCAGCCCACCCTCCTCGAGCTGTGC
GACCCCGCACGCCTCCCCCCCGAGTACGGCGGCACCGCCCCCCCCCTCGT
GCAGACTCCTTCGCTATCCGCGTACCTCGAGCAGAAGCAGCCGCCGCTTA
ACCGGGACCCCGATGCCGCCGCCGCCGACGGAGGCAGCAGTGACCTCAAA
GCGGCCCTTGGCGATGCGTTGTCTGCCCCCCCGGGGACAGAGCAGCTGCG
GCGGGCAGCGGCGGCGGCGGCCGTGGTGGCACCAGAAGAAGAAGAGAAGG
AGGAGGAGGAGGAGCCGCGGCTGTATTCTCGCCTCACGCGGCCACGTTCT
TGGTCAAGCCAGTGCCGGCCCCCCCCCGTCTCCAAGGACTTCCTGCGCGT
CCTCAAGGCCGTGGCCAGGGTCGACCAGACCATGTTCCCCGAGCTCCTGG
GCCGCATGCTCATCATCAACACCCCCGCGCTCTTCGGCTACGTGTGGGCC
ATGTTCACCCCCTTGCTCGACGCCCGCACCCGCGCTAAGATCACCGTCGC
CTCCGGCCCGGCCACCTGGCAGCCCACCCTCCTCGAGCTGTGCGACCCCG
CACGCCTCCCCCCCGAGTACGGCGGCACCGCCCCCCCCCTCGTGCAGACT
CCTTCGCTATCCGCGTACCTCGAGCAGAAGCAGCCGCCGCTTAACCGGGA
CCCCGATGCCGCCGCCGCCGACGGAGGCAGCAGTGACCTCAAAGCGGCCC
TTGGCGATGCGTTGTCTGCCCCCCCGGGGACAGAGCAGCTGCGGCGGGCA
GCGGCGGCGGCGGCCGTGGTGGCACCAGAAGAAGAAGAGAAGGAGGAGGA
GGAGGAGCCGCGGCTGTATTCTCGCCTCACGCGGCCACGTTCTTGGTCAA
GCCAGTGCCGGCCCCCCCCCCCGGCGTCTGGCAGTGGCTGGCCCGGTGGG
GCGGGGGCGGGGCCGAGGTCGGGCCCAGGGCCGGTGGCGGCAGCGATTGC
GCGTCACTGTCGGACCTGGACGAGGAGGAATTCCTGGACGCCGTGGCAGA
GTTGGAGGATATGACCGGCGTCTGGCAGTGGCTGGCCCGGTGGGGCGGGG
GCGGGGCCGAGGTCGGGCCCAGGGCCGGTGGCGGCAGCGATTGCGCGTCA
CTGTCGGACCTGGACGAGGAGGAATTCCTGGACGCCGTGGCAGAGTTGGA
GGATATGA
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